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Yong X, Jia G, Liu Z, Zhou C, Yi J, Tang Y, Chen L, Chen L, Wang Y, Sun Q, Billadeau D, Su Z, Jia D. Cryo-EM structure of the Mon1-Ccz1-RMC1 complex reveals molecular basis of metazoan RAB7A activation. Proc Natl Acad Sci U S A 2023; 120:e2301725120. [PMID: 37216550 PMCID: PMC10235969 DOI: 10.1073/pnas.2301725120] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2023] [Accepted: 04/18/2023] [Indexed: 05/24/2023] Open
Abstract
Understanding of the evolution of metazoans from their unicellular ancestors is a fundamental question in biology. In contrast to fungi which utilize the Mon1-Ccz1 dimeric complex to activate the small GTPase RAB7A, metazoans rely on the Mon1-Ccz1-RMC1 trimeric complex. Here, we report a near-atomic resolution cryogenic-electron microscopy structure of the Drosophila Mon1-Ccz1-RMC1 complex. RMC1 acts as a scaffolding subunit and binds to both Mon1 and Ccz1 on the surface opposite to the RAB7A-binding site, with many of the RMC1-contacting residues from Mon1 and Ccz1 unique to metazoans, explaining the binding specificity. Significantly, the assembly of RMC1 with Mon1-Ccz1 is required for cellular RAB7A activation, autophagic functions and organismal development in zebrafish. Our studies offer a molecular explanation for the different degree of subunit conservation across species, and provide an excellent example of how metazoan-specific proteins take over existing functions in unicellular organisms.
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Affiliation(s)
- Xin Yong
- Key Laboratory of Birth Defects and Related Diseases of Women and Children, Department of Paediatrics, West China Second University Hospital, State Key Laboratory of Biotherapy and Collaborative Innovation Center of Biotherapy, Sichuan University, Chengdu610041, China
| | - Guowen Jia
- Department of Geriatrics and National Clinical Research Center for Geriatrics, State Key Laboratory of Biotherapy and Cancer Center, West China Hospital, Sichuan University610044Chengdu, China
| | - Zhe Liu
- Key Laboratory of Birth Defects and Related Diseases of Women and Children, Department of Paediatrics, West China Second University Hospital, State Key Laboratory of Biotherapy and Collaborative Innovation Center of Biotherapy, Sichuan University, Chengdu610041, China
| | - Chunzhuang Zhou
- Key Laboratory of Birth Defects and Related Diseases of Women and Children, Department of Paediatrics, West China Second University Hospital, State Key Laboratory of Biotherapy and Collaborative Innovation Center of Biotherapy, Sichuan University, Chengdu610041, China
| | - Jiamin Yi
- Key Laboratory of Birth Defects and Related Diseases of Women and Children, Department of Paediatrics, West China Second University Hospital, State Key Laboratory of Biotherapy and Collaborative Innovation Center of Biotherapy, Sichuan University, Chengdu610041, China
| | - Yingying Tang
- Key Laboratory of Birth Defects and Related Diseases of Women and Children, Department of Paediatrics, West China Second University Hospital, State Key Laboratory of Biotherapy and Collaborative Innovation Center of Biotherapy, Sichuan University, Chengdu610041, China
| | - Li Chen
- Key Laboratory of Birth Defects and Related Diseases of Women and Children, Department of Paediatrics, West China Second University Hospital, State Key Laboratory of Biotherapy and Collaborative Innovation Center of Biotherapy, Sichuan University, Chengdu610041, China
| | - Lu Chen
- Key Laboratory of Birth Defects and Related Diseases of Women and Children, Department of Paediatrics, West China Second University Hospital, State Key Laboratory of Biotherapy and Collaborative Innovation Center of Biotherapy, Sichuan University, Chengdu610041, China
| | - Yuan Wang
- Department of Geriatrics and National Clinical Research Center for Geriatrics, State Key Laboratory of Biotherapy and Cancer Center, West China Hospital, Sichuan University610044Chengdu, China
| | - Qingxiang Sun
- Department of Geriatrics and National Clinical Research Center for Geriatrics, State Key Laboratory of Biotherapy and Cancer Center, West China Hospital, Sichuan University610044Chengdu, China
| | - Daniel D. Billadeau
- Division of Oncology Research and Schulze Center for Novel Therapeutics, Mayo Clinic, Rochester, MN55905
| | - Zhaoming Su
- Department of Geriatrics and National Clinical Research Center for Geriatrics, State Key Laboratory of Biotherapy and Cancer Center, West China Hospital, Sichuan University610044Chengdu, China
| | - Da Jia
- Key Laboratory of Birth Defects and Related Diseases of Women and Children, Department of Paediatrics, West China Second University Hospital, State Key Laboratory of Biotherapy and Collaborative Innovation Center of Biotherapy, Sichuan University, Chengdu610041, China
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2
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Ratnaparkhi A, Sudhakaran J. Neural pathways in nutrient sensing and insulin signaling. Front Physiol 2022; 13:1002183. [PMID: 36439265 PMCID: PMC9691681 DOI: 10.3389/fphys.2022.1002183] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2022] [Accepted: 10/18/2022] [Indexed: 10/29/2023] Open
Abstract
Nutrient sensing and metabolic homeostasis play an important role in the proper growth and development of an organism, and also in the energy intensive process of reproduction. Signals in response to nutritional and metabolic status is received and integrated by the brain to ensure homeostasis. In Drosophila, the fat body is one of the key organs involved in energy and nutrient sensing, storage and utilization. It also relays the nutritional status of the animal to the brain, activating specific circuits which modulate the synthesis and release of insulin-like peptides to regulate metabolism. Here, we review the molecular and cellular mechanisms involved in nutrient sensing with an emphasis on the neural pathways that modulate this process and discuss some of the open questions that need to be addressed.
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Affiliation(s)
- Anuradha Ratnaparkhi
- Department of Developmental Biology, MACS-Agharkar Research Institute, Pune, India
- Savitribai Phule Pune University, Pune, India
| | - Jyothish Sudhakaran
- Department of Developmental Biology, MACS-Agharkar Research Institute, Pune, India
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Yildirim K, Winkler B, Pogodalla N, Mackensen S, Baldenius M, Garcia L, Naffin E, Rodrigues S, Klämbt C. Redundant functions of the SLC5A transporters Rumpel, Bumpel, and Kumpel in ensheathing glial cells. Biol Open 2021; 11:274028. [PMID: 34897385 PMCID: PMC8790523 DOI: 10.1242/bio.059128] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2021] [Accepted: 11/26/2021] [Indexed: 11/20/2022] Open
Abstract
Neuronal processing is energy demanding, and relies on sugar metabolism. To nurture the Drosophila nervous system, the blood-brain barrier forming glial cells take up trehalose from the hemolymph and then distribute the metabolic products further to all neurons. This function is provided by glucose and lactate transporters of the solute carrier (SLC) 5A family. Here we identified three SLC5A genes that are specifically expressed in overlapping sets of CNS glial cells, rumpel, bumpel and kumpel. We generated mutants in all genes and all mutants are viable and fertile, lacking discernible phenotypes. Loss of rumpel causes subtle locomotor phenotypes and flies display increased daytime sleep. In addition, in bumpel kumpel double mutants, and to an even greater extent in rumpel bumpel kumpel triple mutants, oogenesis is disrupted at the onset of the vitollegenic phase. This indicates a partially redundant functions between these genes. Rescue experiments exploring this effect indicate that oogenesis can be affected by CNS glial cells. Moreover, expression of heterologous mammalian SLC5A transporters, with known transport properties, suggest that Bumpel and/or Kumpel transport glucose or lactate. Overall, our results imply a redundancy in SLC5A nutrient sensing functions in Drosophila glial cells, affecting ovarian development and behavior.
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Affiliation(s)
- Kerem Yildirim
- Institute for Neuro- and Behavioral Biology, University of Münster, Badestr. 9, 48149 Münster, Germany.,Centre for Organismal Studies (COS) Heidelberg, University of Heidelberg, Im Neuenheimer Feld 230, 9120 Heidelberg, Germany
| | - Bente Winkler
- Institute for Neuro- and Behavioral Biology, University of Münster, Badestr. 9, 48149 Münster, Germany
| | - Nicole Pogodalla
- Institute for Neuro- and Behavioral Biology, University of Münster, Badestr. 9, 48149 Münster, Germany
| | - Steffi Mackensen
- Institute for Neuro- and Behavioral Biology, University of Münster, Badestr. 9, 48149 Münster, Germany
| | - Marie Baldenius
- Institute for Neuro- and Behavioral Biology, University of Münster, Badestr. 9, 48149 Münster, Germany
| | - Luis Garcia
- Institute for Neuro- and Behavioral Biology, University of Münster, Badestr. 9, 48149 Münster, Germany
| | - Elke Naffin
- Institute for Neuro- and Behavioral Biology, University of Münster, Badestr. 9, 48149 Münster, Germany
| | - Silke Rodrigues
- Institute for Neuro- and Behavioral Biology, University of Münster, Badestr. 9, 48149 Münster, Germany
| | - Christian Klämbt
- Institute for Neuro- and Behavioral Biology, University of Münster, Badestr. 9, 48149 Münster, Germany
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Dehnen L, Janz M, Verma JK, Psathaki OE, Langemeyer L, Fröhlich F, Heinisch JJ, Meyer H, Ungermann C, Paululat A. A trimeric metazoan Rab7 GEF complex is crucial for endocytosis and scavenger function. J Cell Sci 2020; 133:jcs247080. [PMID: 32499409 DOI: 10.1242/jcs.247080] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2020] [Accepted: 05/20/2020] [Indexed: 12/12/2022] Open
Abstract
Endosome biogenesis in eukaryotic cells is critical for nutrient uptake and plasma membrane integrity. Early endosomes initially contain Rab5, which is replaced by Rab7 on late endosomes prior to their fusion with lysosomes. Recruitment of Rab7 to endosomes requires the Mon1-Ccz1 guanine-nucleotide-exchange factor (GEF). Here, we show that full function of the Drosophila Mon1-Ccz1 complex requires a third stoichiometric subunit, termed Bulli (encoded by CG8270). Bulli localises to Rab7-positive endosomes, in agreement with its function in the GEF complex. Using Drosophila nephrocytes as a model system, we observe that absence of Bulli results in (i) reduced endocytosis, (ii) Rab5 accumulation within non-acidified enlarged endosomes, (iii) defective Rab7 localisation and (iv) impaired endosomal maturation. Moreover, longevity of animals lacking bulli is affected. Both the Mon1-Ccz1 dimer and a Bulli-containing trimer display Rab7 GEF activity. In summary, this suggests a key role for Bulli in the Rab5 to Rab7 transition during endosomal maturation rather than a direct influence on the GEF activity of Mon1-Ccz1.
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Affiliation(s)
- Lena Dehnen
- Department of Biology and Chemistry, Zoology and Developmental Biology, University of Osnabrück, Barbarastraße 11, 49076 Osnabrück, Germany
| | - Maren Janz
- Department of Biology and Chemistry, Zoology and Developmental Biology, University of Osnabrück, Barbarastraße 11, 49076 Osnabrück, Germany
| | - Jitender Kumar Verma
- Department of Biology and Chemistry, Biochemistry, University of Osnabrück, Barbarastraße 11, 49076 Osnabrück, Germany
| | - Olympia Ekaterini Psathaki
- Center of Cellular Nanoanalytics, Integrated Bioimaging Facility Osnabrück (iBiOs), University of Osnabrück, 49076 Osnabrück, Germany
| | - Lars Langemeyer
- Department of Biology and Chemistry, Biochemistry, University of Osnabrück, Barbarastraße 11, 49076 Osnabrück, Germany
| | - Florian Fröhlich
- Department of Biology and Chemistry, Molecular Membrane Biology, University of Osnabrück, Barbarastraße 11, 49076 Osnabrück, Germany
| | - Jürgen J Heinisch
- Department of Biology and Chemistry, Genetics, University of Osnabrück, Barbarastraße 11, 49076 Osnabrück, Germany
- Center of Cellular Nanoanalytics, University of Osnabrück, Barbarastraße 11, 49076 Osnabrück, Germany
| | - Heiko Meyer
- Department of Biology and Chemistry, Zoology and Developmental Biology, University of Osnabrück, Barbarastraße 11, 49076 Osnabrück, Germany
- Center of Cellular Nanoanalytics, University of Osnabrück, Barbarastraße 11, 49076 Osnabrück, Germany
| | - Christian Ungermann
- Department of Biology and Chemistry, Biochemistry, University of Osnabrück, Barbarastraße 11, 49076 Osnabrück, Germany
- Center of Cellular Nanoanalytics, University of Osnabrück, Barbarastraße 11, 49076 Osnabrück, Germany
| | - Achim Paululat
- Department of Biology and Chemistry, Zoology and Developmental Biology, University of Osnabrück, Barbarastraße 11, 49076 Osnabrück, Germany
- Center of Cellular Nanoanalytics, University of Osnabrück, Barbarastraße 11, 49076 Osnabrück, Germany
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Harish RK, Tendulkar S, Deivasigamani S, Ratnaparkhi A, Ratnaparkhi GS. Monensin Sensitive 1 Regulates Dendritic Arborization in Drosophila by Modulating Endocytic Flux. Front Cell Dev Biol 2019; 7:145. [PMID: 31428611 PMCID: PMC6687774 DOI: 10.3389/fcell.2019.00145] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2019] [Accepted: 07/16/2019] [Indexed: 12/03/2022] Open
Abstract
Monensin Sensitive 1 (Mon1) is a component of the Mon1:Ccz1 complex that mediates Rab5 to Rab7 conversion in eukaryotic cells by serving as a guanine nucleotide exchange factor for Rab7 during vesicular trafficking. We find that Mon1 activity modulates the complexity of Class IV dendritic arborization (da) neurons during larval development. Loss of Mon1 function leads to an increase in arborization and complexity, while increased expression, leads to reduced arborization. The ability of Mon1 to influence dendritic development is possibly a function of its interactions with Rab family GTPases that are central players in vesicular trafficking. Earlier, these GTPases, specifically Rab1, Rab5, Rab10, and Rab11 have been shown to regulate dendritic arborization. We have conducted genetic epistasis experiments, by modulating the activity of Rab5, Rab7, and Rab11 in da neurons, in Mon1 mutants, and demonstrate that the ability of Mon1 to regulate arborization is possibly due to its effect on the recycling pathway. Dendritic branching is critical for proper connectivity and physiological function of the neuron. An understanding of regulatory elements, such as Mon1, as demonstrated in our study, is essential to understand neuronal function.
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Affiliation(s)
| | - Shweta Tendulkar
- Indian Institutes of Science Education and Research, Pune, India
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