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Christensen EAF, Andersen LEJ, Bergsson H, Steffensen JF, Killen SS. Shuttle-box systems for studying preferred environmental ranges by aquatic animals. CONSERVATION PHYSIOLOGY 2021; 9:coab028. [PMID: 34026213 PMCID: PMC8129825 DOI: 10.1093/conphys/coab028] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/17/2020] [Revised: 03/09/2021] [Accepted: 03/29/2021] [Indexed: 05/12/2023]
Abstract
Animals' selection of environments within a preferred range is key to understanding their habitat selection, tolerance to stressors and responses to environmental change. For aquatic animals, preferred environmental ranges can be studied in so-called shuttle-boxes, where an animal can choose its ambient environment by shuttling between separate choice chambers with differences in an environmental variable. Over time, researchers have refined the shuttle-box technology and applied them in many different research contexts, and we here review the use of shuttle-boxes as a research tool with aquatic animals over the past 50 years. Most studies on the methodology have been published in the latest decade, probably due to an increasing research interest in the effects of environmental change, which underlines the current popularity of the system. The shuttle-box has been applied to a wide range of research topics with regards to preferred ranges of temperature, CO 2 , salinity and O 2 in a vast diversity of species, showing broad applicability for the system. We have synthesized the current state-of-the-art of the methodology and provided best practice guidelines with regards to setup, data analyses, experimental design and study reporting. We have also identified a series of knowledge gaps, which can and should be addressed in future studies. We conclude with highlighting directions for research using shuttle-boxes within evolutionary biology and behavioural and physiological ecology.
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Affiliation(s)
- Emil A F Christensen
- Institute of Biodiversity, Animal Health and Comparative Medicine, University of Glasgow,
82 Hillhead Street, Glasgow, G12 8QQ, UK
| | - Lars E J Andersen
- Marine Biological Section, University of Copenhagen, Strandpromenaden 5, 3000 Elsinore, Denmark
| | - Heiðrikur Bergsson
- Marine Biological Section, University of Copenhagen, Strandpromenaden 5, 3000 Elsinore, Denmark
| | - John F Steffensen
- Marine Biological Section, University of Copenhagen, Strandpromenaden 5, 3000 Elsinore, Denmark
| | - Shaun S Killen
- Institute of Biodiversity, Animal Health and Comparative Medicine, University of Glasgow,
82 Hillhead Street, Glasgow, G12 8QQ, UK
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Zhong Y, Zhao W, Tang Z, Huang L, Zhu X, Liang X, Yan A, Lu Z, Yu Y, Tang D, Wang D, Lu Z. Comparative transcriptomic analysis of the different developmental stages of ovary in red swamp crayfish Procambarus clarkii. BMC Genomics 2021; 22:199. [PMID: 33745451 PMCID: PMC7981885 DOI: 10.1186/s12864-021-07537-x] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2020] [Accepted: 03/15/2021] [Indexed: 11/10/2022] Open
Abstract
Background The red swamp crayfish Procambarus clarkii is a freshwater species that possesses high adaptability, environmental tolerance, and fecundity. P. clarkii is artificially farmed on a large scale in China. However, the molecular mechanisms of ovarian development in P. clarkii remain largely unknown. In this study, we identified four stages of P. clarkii ovary development, the previtellogenic stage (stage I), early vitellogenic stage (stage II), middle vitellogenic stage (stage III), and mature stage (stage IV) and compared the transcriptomics among these four stages through next-generation sequencing (NGS). Results The total numbers of clean reads of the four stages ranged from 42,013,648 to 62,220,956. A total of 216,444 unigenes were obtained, and the GC content of most unigenes was slightly less than the AT content. Principal Component Analysis (PCA) and Anosim analysis demonstrated that the grouping of these four stages was feasible, and each stage could be distinguished from the others. In the expression pattern analysis, 2301 genes were continuously increase from stage I to stage IV, and 2660 genes were sharply decrease at stage IV compared to stages I-III. By comparing each of the stages at the same time, four clusters of differentially expressed genes (DEGs) were found to be uniquely highly expressed in stage I (136 genes), stage II (43 genes), stage III-IV (49 genes), and stage IV (22 genes), thus exhibiting developmental stage specificity. Moreover, in comparisons between adjacent stages, the number of DEGs between stage III and IV was the highest. GO enrichment analysis demonstrated that nutrient reservoir activity was highest at stage II and that this played a foreshadowing role in ovarian development, and the GO terms of cell, intracellular and organelle participated in the ovary maturation during later stages. In addition, KEGG pathway analysis revealed that the early development of the ovary was mainly associated with the PI3K-Akt signaling pathway and focal adhesion; the middle developmental period was related to apoptosis, lysine biosynthesis, and the NF-kappa B signaling pathway; the late developmental period was involved with the cell cycle and the p53 signaling pathway. Conclusion These transcriptomic data provide insights into the molecular mechanisms of ovarian development in P. clarkii. The results will be helpful for improving the reproduction and development of this aquatic species. Supplementary Information The online version contains supplementary material available at 10.1186/s12864-021-07537-x.
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Affiliation(s)
- Yizhi Zhong
- Guangxi Academy of Fishery Sciences/Guangxi Key Laboratory of Aquatic Genetic Breeding and Healthy Aquaculture, Nanning, 530021, China
| | - Wenbin Zhao
- Guangxi Academy of Fishery Sciences/Guangxi Key Laboratory of Aquatic Genetic Breeding and Healthy Aquaculture, Nanning, 530021, China
| | - Zhangsheng Tang
- Guangxi Academy of Fishery Sciences/Guangxi Key Laboratory of Aquatic Genetic Breeding and Healthy Aquaculture, Nanning, 530021, China
| | - Liming Huang
- Guangxi Academy of Fishery Sciences/Guangxi Key Laboratory of Aquatic Genetic Breeding and Healthy Aquaculture, Nanning, 530021, China
| | - Xiangxing Zhu
- Guangdong Provincial Key Laboratory of Animal Molecular Design and Precise Breeding, Guangdong Provincial Engineering and Technology Research Center for Gene Editing, School of Medical Engineering, Foshan University, Foshan, 528225, China
| | - Xiang Liang
- Development Research Institute of Agro-animal Husbandry Industry, Guangxi University, Nanning, 530004, China
| | - Aifen Yan
- Guangdong Provincial Key Laboratory of Animal Molecular Design and Precise Breeding, Guangdong Provincial Engineering and Technology Research Center for Gene Editing, School of Medical Engineering, Foshan University, Foshan, 528225, China
| | - Zhifa Lu
- Guangxi Academy of Fishery Sciences/Guangxi Key Laboratory of Aquatic Genetic Breeding and Healthy Aquaculture, Nanning, 530021, China
| | - Yanling Yu
- Guangxi Academy of Fishery Sciences/Guangxi Key Laboratory of Aquatic Genetic Breeding and Healthy Aquaculture, Nanning, 530021, China
| | - Dongsheng Tang
- Guangdong Provincial Key Laboratory of Animal Molecular Design and Precise Breeding, Guangdong Provincial Engineering and Technology Research Center for Gene Editing, School of Medical Engineering, Foshan University, Foshan, 528225, China
| | - Dapeng Wang
- Guangxi Academy of Fishery Sciences/Guangxi Key Laboratory of Aquatic Genetic Breeding and Healthy Aquaculture, Nanning, 530021, China.
| | - Zhuanling Lu
- Guangxi Academy of Fishery Sciences/Guangxi Key Laboratory of Aquatic Genetic Breeding and Healthy Aquaculture, Nanning, 530021, China.
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Mathews L. Outcomes of agonistic interactions alter sheltering behavior in crayfish. Behav Processes 2021; 184:104337. [PMID: 33515634 DOI: 10.1016/j.beproc.2021.104337] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2020] [Revised: 01/14/2021] [Accepted: 01/19/2021] [Indexed: 12/22/2022]
Abstract
'Winner' and 'loser' effects have been demonstrated in a broad range of species, but such investigations are often limited to the effects of prior contest outcomes on future agonistic interactions. Much less is known about the impacts of winning or losing contests on other aspects of individual behavior, like courtship interactions and sheltering behavior. In this investigation, I examined the effect of prior contest outcomes on sheltering behavior in the crayfish Faxonius virilis. I predicted that winners of contests would spend less time inside shelters and more time exploring, while losers of contests would spend more time inside shelters and less time exploring. I compared individual sheltering behavior before and after staged dyadic encounters between competitively mismatched individuals. This experiment revealed strong effects on the behavior of contest losers, which showed significant increases in the amount of time spent inside the shelter immediately after the contest. However, there was no significant change in the sheltering behavior of contest winners. These results reinforce the idea that contest outcomes can affect individual behaviors other than agonistic behavior, and suggest that losing a contest may motivate individual crayfish to engage in less-risky behavior, at least for a brief period after the contest.
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Affiliation(s)
- Lauren Mathews
- Department of Biology, Worcester Polytechnic Institute, United States.
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4
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Skandalis DA, Dobell CD, Shaw JC, Tattersall GJ. Hydrogen sulfide exposure reduces thermal set point in zebrafish. ROYAL SOCIETY OPEN SCIENCE 2020; 7:200416. [PMID: 33391778 PMCID: PMC7735326 DOI: 10.1098/rsos.200416] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/12/2020] [Accepted: 10/06/2020] [Indexed: 05/26/2023]
Abstract
Behavioural flexibility allows ectotherms to exploit the environment to govern their metabolic physiology, including in response to environmental stress. Hydrogen sulfide (H2S) is a widespread environmental toxin that can lethally inhibit metabolism. However, H2S can also alter behaviour and physiology, including a hypothesized induction of hibernation-like states characterized by downward shifts of the innate thermal set point (anapyrexia). Support for this hypothesis has proved controversial because it is difficult to isolate active and passive components of thermoregulation, especially in animals with high resting metabolic heat production. Here, we directly test this hypothesis by leveraging the natural behavioural thermoregulatory drive of fish to move between environments of different temperatures in accordance with their current physiological state and thermal preference. We observed a decrease in adult zebrafish (Danio rerio) preferred body temperature with exposure to 0.02% H2S, which we interpret as a shift in the thermal set point. Individuals exhibited consistent differences in shuttling behaviour and preferred temperatures, which were reduced by a constant temperature magnitude during H2S exposure. Seeking lower temperatures alleviated H2S-induced metabolic stress, as measured by reduced rates of aquatic surface respiration. Our findings highlight the interactions between individual variation and sublethal impacts of environmental toxins on behaviour.
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Affiliation(s)
| | | | | | - Glenn J. Tattersall
- Department of Biological Sciences, Brock University, St Catharines, 500 Glenridge Avenue, St Catharines, Ontario, CanadaL2S 3A1
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5
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Currie S, Tattersall GJ. Social cues can push amphibious fish to their thermal limits. Biol Lett 2018; 14:20180492. [PMID: 30381451 PMCID: PMC6227855 DOI: 10.1098/rsbl.2018.0492] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2018] [Accepted: 10/04/2018] [Indexed: 01/09/2023] Open
Abstract
Social context can impact how animals respond to changes in their physical environment. We used an aggressive, amphibious fish, the mangrove rivulus (Kryptolebias marmoratus) with environmentally determined sociality to test the hypothesis that social interactions would push fish to their thermal limits. We capitalized on the propensity of rivulus to emerge from warming water and demonstrated that social stimuli, produced by their reflection, increased emersion threshold without changing the critical thermal maximum, effectively diminishing thermal safety margins. When rivulus were denied air access, surface behaviours dramatically increased, supplanting social interactions. This suggests that assessing the terrestrial environment is crucially important. We conclude that social stimulation narrows the scope for survival in naturally stressful conditions.
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Affiliation(s)
- Suzanne Currie
- Department of Biology, Acadia University, Wolfville, Nova Scotia, Canada
- Department of Biology, Mount Allison University, Sackville, New Brunswick, Canada
| | - Glenn J Tattersall
- Department of Biological Sciences, Brock University, St Catharines, Ontario, Canada
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Winterová B, Gvoždík L. Influence of interspecific competitors on behavioral thermoregulation: developmental or acute plasticity? Behav Ecol Sociobiol 2018. [DOI: 10.1007/s00265-018-2587-2] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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7
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Ergin B, Purali N. Cloning of a putative sodium/calcium exchanger gene in the crayfish. INVERTEBRATE NEUROSCIENCE 2018; 18:9. [PMID: 30019091 DOI: 10.1007/s10158-018-0213-7] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/04/2018] [Accepted: 07/10/2018] [Indexed: 11/28/2022]
Abstract
Crayfish is a common model animal for different experimental purposes. However, the lack of information about the genetic properties of the animal limits its use in comparison to other model animals. In the present study, a putative crayfish sodium/calcium exchanger gene has firstly been cloned in ganglia cDNA samples by conducting a series of PCR experiments, where a set of degenerate and specific primers and RACE method were used. The complete sequence is 2955 bp, and the ORF is 2718 bp in length. Molecular properties of the calculated peptide were similar to the sodium/calcium exchangers reported in the other species. Analysis of the qPCR data indicated that the putative gene has the highest expression level in the ganglia. However, an apparently elevated level of expression is observed in highly active tissues like heart, muscle and intestine, while the least expression level was observed in the stomach samples. It was proposed that the cloned gene may code the sodium/calcium exchanger protein in the crayfish.
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Affiliation(s)
- Bora Ergin
- Department of Biophysics, Faculty of Medicine, Hacettepe University, 06100, Ankara, Turkey
| | - Nuhan Purali
- Department of Biophysics, Faculty of Medicine, Hacettepe University, 06100, Ankara, Turkey.
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8
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Zhu YC, Cooper RL. Cold Exposure Effects on Cardiac Function and Synaptic Transmission at the Neuromuscular Junction in Invertebrates. ACTA ACUST UNITED AC 2018. [DOI: 10.3923/ijzr.2018.49.60] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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9
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Thermoregulatory behavior and orientation preference in bearded dragons. J Therm Biol 2017; 69:171-177. [DOI: 10.1016/j.jtherbio.2017.07.009] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2017] [Revised: 07/18/2017] [Accepted: 07/19/2017] [Indexed: 11/15/2022]
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10
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Rusch TW, Angilletta MJ. Competition during thermoregulation altered the body temperatures and hormone levels of lizards. Funct Ecol 2017. [DOI: 10.1111/1365-2435.12869] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
Affiliation(s)
- Travis W. Rusch
- School of Life Sciences Arizona State University Tempe AZ85287 USA
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11
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Patoka J, Petrtýl M, Koščo J, Rylková K. Juvenile red swamp crayfish growth affected by isolation from their mother. Biologia (Bratisl) 2015. [DOI: 10.1515/biolog-2015-0069] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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12
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In-depth transcriptome analysis of the red swamp crayfish Procambarus clarkii. PLoS One 2014; 9:e110548. [PMID: 25338101 PMCID: PMC4206422 DOI: 10.1371/journal.pone.0110548] [Citation(s) in RCA: 55] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2014] [Accepted: 09/16/2014] [Indexed: 11/25/2022] Open
Abstract
The red swamp crayfish Procambarus clarkii is a highly adaptable, tolerant, and fecund freshwater crayfish that inhabits a wide range of aquatic environments. It is an important crustacean model organism that is used in many research fields, including animal behavior, environmental stress and toxicity, and studies of viral infection. Despite its widespread use, knowledge of the crayfish genome is very limited and insufficient for meaningful research. This is the use of next-generation sequencing techniques to analyze the crayfish transcriptome. A total of 324.97 million raw reads of 100 base pairs were generated, and a total of 88,463 transcripts were assembled de novo using Trinity software, producing 55,278 non-redundant transcripts. Comparison of digital gene expression between four different tissues revealed differentially expressed genes, in which more overexpressed genes were found in the hepatopancreas than in other tissues, and more underexpressed genes were found in the testis and the ovary than in other tissues. Gene ontology (GO) and KEGG enrichment analysis of differentially expressed genes revealed that metabolite- and immune-related pathway genes were enriched in the hepatopancreas, and DNA replication-related pathway genes were enriched in the ovary and the testis, which is consistent with the important role of the hepatopancreas in metabolism, immunity, and the stress response, and with that of the ovary and the testis in reproduction. It was also found that 14 vitellogenin transcripts were highly expressed specifically in the hepatopancreas, and 6 transcripts were highly expressed specifically in the ovary, but no vitellogenin transcripts were highly expressed in both the hepatopancreas and the ovary. These results provide new insight into the role of vitellogenin in crustaceans. In addition, 243,764 SNP sites and 43,205 microsatellite sequences were identified in the sequencing data. We believe that our results provide an important genome resource for the crayfish.
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13
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Branco LG, Soriano RN, Steiner AA. Gaseous Mediators in Temperature Regulation. Compr Physiol 2014; 4:1301-38. [DOI: 10.1002/cphy.c130053] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
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14
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Gvoždík L, Černická E, Van Damme R. Predator-prey interactions shape thermal patch use in a newt larvae-dragonfly nymph model. PLoS One 2013; 8:e65079. [PMID: 23755175 PMCID: PMC3670910 DOI: 10.1371/journal.pone.0065079] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2013] [Accepted: 04/22/2013] [Indexed: 11/18/2022] Open
Abstract
Thermal quality and predation risk are considered important factors influencing habitat patch use in ectothermic prey. However, how the predator's food requirement and the prey's necessity to avoid predation interact with their respective thermoregulatory strategies remains poorly understood. The recently developed 'thermal game model' predicts that in the face of imminent predation, prey should divide their time equally among a range of thermal patches. In contrast, predators should concentrate their hunting activities towards warmer patches. In this study, we test these predictions in a laboratory setup and an artificial environment that mimics more natural conditions. In both cases, we scored thermal patch use of newt larvae (prey) and free-ranging dragonfly nymphs (predators). Similar effects were seen in both settings. The newt larvae spent less time in the warm patch if dragonfly nymphs were present. The patch use of the dragonfly nymphs did not change as a function of prey availability, even when the nymphs were starved prior to the experiment. Our behavioral observations partially corroborate predictions of the thermal game model. In line with asymmetric fitness pay-offs in predator-prey interactions (the 'life-dinner' principle), the prey's thermal strategy is more sensitive to the presence of predators than vice versa.
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Affiliation(s)
- Lumír Gvoždík
- Institute of Vertebrate Biology AS CR, Brno, Czech Republic.
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15
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Knight K. CRAYFISH COMPETE FOR COMFORTABLE TEMPERATURE. J Exp Biol 2012. [DOI: 10.1242/jeb.074302] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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