Supramolecular organisation of sulphate salt hydrates exemplified with brucine sulphate

The frequency of hydrate formation among organic sulphate salts is unravelled. Interconversion of the hydrates of brucine sulphate occurs with small changes in the relative humidity.

Molecular structure, spectroscopic and quantum chemical studies on benzoic acid and succinic acid co-crystals of 2-aminopyrimidine

Organic nonlinear optical co-crystals 2-aminopyrimidine benzoic acid (2APB) and 2-aminopyrimidine succinic acid (2APS) have been successfully grown by slow solvent evaporation method at room temperature. The structural characterization of the grown crystals was carried out by single crystal X-ray diffraction. Fourier transform infrared spectroscopy (FT-IR) and FT-Raman spectra of the grown crystals are recorded and the observed vibrational frequencies are assigned. The hybrid computational calculations are carried out by Hartree–Fock (HF) and density functional theory (DFT) (3-parameter, Lee-Yang-Parr (B3LYP)) methods with 6-311[Formula: see text]G(d,p) basis sets and the corresponding results are tabulated. The geometrical parameters of the molecules also have been analyzed. The computed vibrational spectra were compared with experimental result which shows appreciable agreement. The chemical hardness, electronegativity, chemical potential and electrophilicity index were determined by highest occupied molecular orbital–lowest unoccupied molecular orbital (HOMO–LUMO) plot. The grown crystals were subjected to population analysis, thermal, linear and nonlinear optical studies of materials. The calculated second-order hyperpolarizability values of these materials are nearly two to four times that of urea.

Why do Hydrates (Solvates) Form in Small Neutral Organic Molecules? Exploring the Crystal Form Landscapes of the Alkaloids Brucine and Strychnine

Computational methods were used to generate and explore the crystal structure landscapes of the two alkaloids strychnine and brucine. The computed structures were analyzed and rationalized by correlating the modelling results to a rich pool of available experimental data. Despite their structural similarity, the two compounds show marked differences in the formation of solid forms. For strychnine only one anhydrous form is reported in the literature and two new solvates from 1,4-dioxane were detected in the course of this work. In contrast, 22 solid forms are so far known to exist for brucine, comprising two anhydrates, four hydrates (HyA - HyC and a 5.25-hydrate), twelve solvates (alcohols and acetone) and four heterosolvates (mixed solvates with water and alcohols). For strychnine it is hard to produce any solid form other than the stable anhydrate while the formation of specific solid state forms of brucine is governed by a complex interplay between temperature and relative humidity/water activity and it is rather a challenging to avoid hydrate formation. Differences in crystal packing and the high tendency for brucine to form hydrates are not intuitive from the molecular structure alone, as both molecules have hydrogen bond acceptor groups but lack hydrogen bond donor groups. Only the evaluation of the crystal energy landscapes, in particular the close-packed crystal structures and high-energy open frameworks containing voids of molecular (water) dimensions, allowed us to unravel the diverse solid state behavior of the two alkaloids at a molecular level. In this study we demonstrate that expanding the analysis of anhydrate crystal energy landscapes to higher energy structures and calculating the solvent-accessible volume can be used to estimate non-stoichiometric or channel hydrate (solvate) formation, without explicitly computing the hydrate/solvate crystal energy landscapes.

Stoichiometric and Non-Stoichiometric Hydrates of Brucine

The complex interplay of temperature and water activity (a_w) / relative humidity (RH) on the solid form stability and transformation pathways of three hydrates (HyA, HyB and HyC), an isostructural dehydrate (HyA_dehy ), an anhydrate (AH) and amorphous brucine has been elucidated and the transformation enthalpies quantified. The dihydrate (HyA) shows a non-stoichimetric (de)hydration behavior at RH < 40% at 25 °C and the removal of the water molecules results in an isomorphic dehydrate structure. The metastable dehydration product converts to AH upon storage at driest conditions or to HyA if exposed to moisture. HyB is a stoichiometric tetrahydrate. The loss of the water molecules causes HyB to collapse to an amorphous phase. Amorphous brucine transforms to AH at RH < 40% RH and a mixture of hydrated phases at higher RH values. The third hyrdate (HyC) is only stable at RH ≥ 55% at 25 °C and contains 3.65 to 3.85 mole equivalent of water. Dehydration of HyC occurs in one step at RH < 55% at 25 °C or upon heating and AH is obtained. The AH is the thermodynamically most stable phase of brucine at RH < 40% at 25 °C. Depending on the conditions, temperature and a_w, each of the three hydrates becomes the thermodynamically most stable form. This study demonstrates the importance of applying complimentary analytical techniques and appropriate approaches for understanding the stability ranges and transition behavior between the solid forms of compounds with multiple hydrates.

Spectroscopic and physicochemical studies on organic crystal of brucine hydrogen maleate pentahydrate

Salt of brucine hydrogen maleate pentahydrate was synthesized and grown as a single crystal by slow evaporation solution growth technique. The cell parameters of the grown crystal were calculated from powder XRD. The presence of the functional groups and the nature of the vibrations were identified in vibrational studies. The decomposition character of the title material was studied by recording TGA/DTA. The way of promotion of electron from ground state to higher energy state was premeditated by recording UV-VIS-NIR spectrum also the mechanical behaviour was deliberated in hardness measurement.

Supramolecular tilt chirality in crystals of steroids and alkaloids

The concept of supramolecular chirality has assumed increasing importance in association with the development of supramolecular chemistry over the last two decades. In chiral crystals, 2 1 helical molecular assemblies are frequently observed as key motifs. Helical handedness of the 2 1 assemblies, however, has not been determined from the mathematical or crystallographical viewpoints. In this context, we have proposed two new concepts, three-axial chirality and tilt chirality. On the basis of the concepts, we describe supramolecular chirality and determine the handedness of 2 1 assemblies that are composed of relatively complicated molecules with multiple stereogenic centers such as brucine, bile acids, and cinchona alkaloids as well as those of simple molecules.

Supramolecular chirality in crystalline assemblies of bile acids and their derivatives; three-axial, tilt, helical, and bundle chirality

Steroidal bile acids and their derivatives exhibit characteristic inclusion behaviors in the crystalline state. Their crystals present varied assemblies due to asymmetric molecular structures, which relate to supramolecular properties through cooperative weak interactions. An overview indicates that the steroidal assemblies lie in an intermediate position among various molecules and have hierarchical structures such as primary, secondary, tertiary, and host-guest assemblies like proteins. Such an interpretation brought about the idea that the assemblies with dimensionality present supramolecular chirality such as three-axial, tilt, helical, bundle, and complementary chirality. This concept of the supramolecular chirality enables us to understand formation of chiral crystals starting from the molecular chirality of the steroidal molecules.

Crystalline host-guest assemblies of steroidal and related molecules: diversity, hierarchy, and supramolecular chirality

Steroidal bile acids and over 50 of their derivatives serve as the hosts of inclusion crystals. These hosts each exhibit their own characteristic inclusion behaviors, which have been explored through more than 300 crystallographic data. The molecules with three-axial chirality combine in asymmetric fashion to form diverse assemblies, which have supramolecular properties, such as recognition and dynamics, through cooperative weak interactions. From an overview of these results, an analogy emerged: the steroidal assemblies may have hierarchical structures, such as primary, secondary, tertiary, and host-guest assemblies, similar to proteins. Accordingly, the assemblies with dimensionality bear supramolecular chirality, such as three-axial, tilt, helical, bundle, and complementary chirality. Such a concept can be extended to other organic substances, such as alkaloids and organic salts. These results move in the direction of supramolecular crystal engineering.