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Recent synthetic advances in borylated pyrazoles. Tetrahedron Lett 2022. [DOI: 10.1016/j.tetlet.2022.154008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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2
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Nandy S, Paul S, Das KK, Kumar P, Ghorai D, Panda S. Synthesis and reactivity of alkynyl boron compounds. Org Biomol Chem 2021; 19:7276-7297. [PMID: 34374405 DOI: 10.1039/d1ob00465d] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
Over the last century, there have been considerable developments in organoboron chemistry due to the stability, non-toxicity, and easy commercial availability of various boronic esters. Several organoboron reagents have emerged and play an increasingly important role in everyday organic synthesis. Among them, alkynyl boron compounds have attracted significant attention due to their easy synthesis and diverse reactivity. In this review, we summarize the advancement of research on alkynyl boron compounds, highlighting their importance in the synthesis of valuable compounds.
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Affiliation(s)
- Soumilee Nandy
- Department of Chemistry, Indian Institute of Technology Kharagpur, Kharagpur 721302, India.
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3
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Lin S, Wang L, Sharma A. Acrylic boronate: a multifunctional C3 building block for catalytic synthesis of rare organoborons and chemoselective heterobifunctional ligations. Chem Sci 2021; 12:7924-7929. [PMID: 34168846 PMCID: PMC8188605 DOI: 10.1039/d1sc00905b] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2021] [Accepted: 04/26/2021] [Indexed: 12/31/2022] Open
Abstract
A novel C3 acylboron building block; acrylic boronate was successfully prepared and its versatility for catalytic synthesis of several previously inaccessible organoborons is described. Cross-metathesis and Pd-catalyzed coupling of acrylic boronate enabled two complementary routes to highly functionalized α,β-unsaturated acylborons and two new types of conjugated borylated products: α,β,γ,δ-unsaturated and bis-α,β unsaturated acylborons. The synthetic application of α,β-unsaturated acylborons was demonstrated for the first time, thereby providing a general and highly regioselective route to medicinally important 3-boryl pyrazoles. Acrylic boronate also provided a unique bis-electrophilic platform for rapid and chemoselective labeling of cysteines with acylboron tags which are potentially useful for site-selective functionalization and orthogonal ligation of proteins.
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Affiliation(s)
- Shengjia Lin
- Department of Chemistry and Chemical Biology, Stevens Institute of Technology Hoboken NJ 07030 USA
| | - Lucia Wang
- Department of Chemistry and Chemical Biology, Stevens Institute of Technology Hoboken NJ 07030 USA
| | - Abhishek Sharma
- Department of Chemistry and Chemical Biology, Stevens Institute of Technology Hoboken NJ 07030 USA
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Cherepanov IA, Moiseev SK. Recent developments in the chemistry of sydnones and sydnone imines. ADVANCES IN HETEROCYCLIC CHEMISTRY 2020. [DOI: 10.1016/bs.aihch.2019.11.003] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
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Haley HMS, Hill AG, Greenwood AI, Woerly EM, Rienstra CM, Burke MD. Peridinin Is an Exceptionally Potent and Membrane-Embedded Inhibitor of Bilayer Lipid Peroxidation. J Am Chem Soc 2018; 140:15227-15240. [PMID: 30388000 PMCID: PMC6452872 DOI: 10.1021/jacs.8b06933] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
Antilipoperoxidant protein dysfunction is associated with many human diseases, suggesting that bilayer lipid peroxidation may contribute broadly to pathogenesis. Small molecule inhibitors of this membrane-localized chemistry could in theory enable better understanding and/or treatment of such diseases, but currently available compounds have important limitations. Many biological questions thus remain unanswered, and clinical trials have largely been disappointing. Enabled by efficient, building block-based syntheses of three atypical carotenoid natural products produced by microorganisms that thrive in environments of extreme oxidative stress, we found that peridinin is a potent inhibitor of nonenzymatic bilayer lipid peroxidation in liposomes and in primary human endothelial cells. We also found that peridinin blocks monocyte-endothelial cell adhesion, a key step in atherogenesis. A series of frontier solid-state NMR experiments with a site-specifically 13C-labeled isotopolog synthesized using the same MIDA boronate building block-based total synthesis approach revealed that peridinin is completely embedded within and physically spans the hydrophobic core of POPC membranes, maximizing its effective molarity at the site of the targeted lipid peroxidation reactions. Alternatively, the widely used carotenoid astaxanthin is significantly less potent and was found to primarily localize extramembranously. Peridinin thus represents a promising and biophysically well-characterized starting point for the development of small molecule antilipoperoxidants that serve as more effective biological probes and/or therapeutics.
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Affiliation(s)
- Hannah M. S. Haley
- Department of Chemistry, University of Illinois at Urbana–Champaign, Urbana, Illinois 61801, United States
| | - Adam G. Hill
- Department of Chemistry, University of Illinois at Urbana–Champaign, Urbana, Illinois 61801, United States
| | - Alexander I. Greenwood
- Department of Chemistry, University of Illinois at Urbana–Champaign, Urbana, Illinois 61801, United States
- Nuclear Magnetic Resonance (NMR) Facility in Applied Science and Physics, William & Mary, Williamsburg, Virginia 23185, United States (A.I.G.)
| | - Eric M. Woerly
- Department of Chemistry, University of Illinois at Urbana–Champaign, Urbana, Illinois 61801, United States
- Eli Lilly and Company, Indianapolis, Indiana 46225, United States (E.M.W.)
| | - Chad M. Rienstra
- Department of Chemistry, University of Illinois at Urbana–Champaign, Urbana, Illinois 61801, United States
- Department of Biochemistry, University of Illinois at Urbana–Champaign, Urbana, Illinois 61801, United States
- Center for Biophysics and Computational Biology, University of Illinois at Urbana–Champaign, Urbana, Illinois 61801, United States
| | - Martin D. Burke
- Department of Chemistry, University of Illinois at Urbana–Champaign, Urbana, Illinois 61801, United States
- Department of Biochemistry, University of Illinois at Urbana–Champaign, Urbana, Illinois 61801, United States
- Carle Illinois College of Medicine, University of Illinois at Urbana–Champaign, Champaign, Illinois 61821, United States
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Trobe M, Burke MD. The Molecular Industrial Revolution: Automated Synthesis of Small Molecules. Angew Chem Int Ed Engl 2018; 57:4192-4214. [PMID: 29513400 PMCID: PMC5912692 DOI: 10.1002/anie.201710482] [Citation(s) in RCA: 101] [Impact Index Per Article: 16.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2017] [Revised: 12/05/2017] [Indexed: 11/10/2022]
Abstract
Today we are poised for a transition from the highly customized crafting of specific molecular targets by hand to the increasingly general and automated assembly of different types of molecules with the push of a button. Creating machines that are capable of making many different types of small molecules on demand, akin to that which has been achieved on the macroscale with 3D printers, is challenging. Yet important progress is being made toward this objective with two complementary approaches: 1) Automation of customized synthesis routes to different targets by machines that enable the use of many reactions and starting materials, and 2) automation of generalized platforms that make many different targets using common coupling chemistry and building blocks. Continued progress in these directions has the potential to shift the bottleneck in molecular innovation from synthesis to imagination, and thereby help drive a new industrial revolution on the molecular scale.
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Affiliation(s)
- Melanie Trobe
- Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA
| | - Martin D. Burke
- Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA
- Department of Biochemistry, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA and Carle-Illinois College of Medicine, University of Illinois at Urbana-Champaign, Champaign, IL 61820, USA
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Trobe M, Burke MD. Die molekulare industrielle Revolution: zur automatisierten Synthese organischer Verbindungen. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201710482] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Affiliation(s)
- Melanie Trobe
- Department of Chemistry University of Illinois Urbana-Champaign 600 S. Mathews, 454 RAL Urbana-Champaign IL 61801 USA
| | - Martin D. Burke
- Department of Chemistry University of Illinois Urbana-Champaign 600 S. Mathews, 454 RAL Urbana-Champaign IL 61801 USA
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Claramunt RM, Santa María D, Alkorta I, Elguero J. The Structure ofN-phenyl-pyrazoles and Indazoles: Mononitro, Dinitro, and Trinitro Derivatives. J Heterocycl Chem 2017. [DOI: 10.1002/jhet.3026] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Affiliation(s)
- Rosa M. Claramunt
- Departamento de Química Orgánica y Bio-Orgánica, Facultad de Ciencias; UNED; Paseo Senda del Rey, 9 28040 Madrid Spain
| | - Dolores Santa María
- Departamento de Química Orgánica y Bio-Orgánica, Facultad de Ciencias; UNED; Paseo Senda del Rey, 9 28040 Madrid Spain
| | - Ibon Alkorta
- Instituto de Química Médica, Centro de Química Orgánica “Manuel Lora-Tamayo”; CSIC; Juan de la Cierva, 3 28006 Madrid Spain
| | - José Elguero
- Instituto de Química Médica, Centro de Química Orgánica “Manuel Lora-Tamayo”; CSIC; Juan de la Cierva, 3 28006 Madrid Spain
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Hornum M, Kumar P, Podsiadly P, Nielsen P. Increasing the Stability of DNA:RNA Duplexes by Introducing Stacking Phenyl-Substituted Pyrazole, Furan, and Triazole Moieties in the Major Groove. J Org Chem 2015; 80:9592-602. [PMID: 26334359 DOI: 10.1021/acs.joc.5b01577] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Abstract
Consecutive incorporations of our previously published thymidine analogue, 5-(1-phenyl-1H-1,2,3-triazol-4-yl)-2'-deoxyuridine monomer W in oligonucleotides, has demonstrated significant duplex-stabilizing properties due to its efficient staking properties in the major groove of DNA:RNA duplexes. The corresponding 2'-deoxycytidine analogue is not as well-accommodated in duplexes, however, due to its clear preference for the ring-flipped coplanar conformation. In our present work, we have used ab initio calculations to design two new building blocks, 5-(5-phenylfuran-2-yl)-2'-deoxycytidine monomer Y and 5-(1-phenyl-1H-pyrazol-3-yl)-2'-deoxycytidine monomer Z, that emulate the conformation of W. These monomers were synthesized by Suzuki-Miyaura couplings, and the pyrazole moiety was obtained in a cycloaddition from N-phenylsydnone. We show that the novel analogues Y and Z engage in efficient stacking either with themselves or with W due to a better overlap of the aromatic moieties. Importantly, we demonstrate that this translates into very thermally stable DNA:RNA duplexes, thus making Y and especially Z good candidates for improving the binding affinities of oligonucleotide-based therapeutics. Since we now have both efficiently stacking T and C analogues in hand, any purine rich stretch can be effectively targeted using these simple analogues. Notably, we show that the introduction of the aromatic rings in the major groove does not significantly change the helical geometry.
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Affiliation(s)
- Mick Hornum
- Nucleic Acid Center, Department of Physics, Chemistry & Pharmacy, University of Southern Denmark , Campusvej 55, DK-5230 Odense, Denmark
| | - Pawan Kumar
- Nucleic Acid Center, Department of Physics, Chemistry & Pharmacy, University of Southern Denmark , Campusvej 55, DK-5230 Odense, Denmark
| | - Patricia Podsiadly
- Nucleic Acid Center, Department of Physics, Chemistry & Pharmacy, University of Southern Denmark , Campusvej 55, DK-5230 Odense, Denmark
| | - Poul Nielsen
- Nucleic Acid Center, Department of Physics, Chemistry & Pharmacy, University of Southern Denmark , Campusvej 55, DK-5230 Odense, Denmark
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Li Y, Wang J, Wang Z, Huang M, Yan B, Cui X, Wu Y, Wu Y. Palladacycle-catalyzed Suzuki–Miyaura reaction of aryl/heteroaryl halides with MIDA boronates in EtOH/H2O or H2O. RSC Adv 2014. [DOI: 10.1039/c4ra07486f] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
With good to excellent yields, a series of mono- or diheteroaryl compounds were synthesized via the palladacycle-catalyzed Suzuki–Miyaura reaction of various N-methyliminodiacetic acid (MIDA) boronates with aryl/heteroaryl halides in EtOH/H2O or H2O.
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Affiliation(s)
- Yabo Li
- College of Chemistry and Molecular Engineering
- Henan Key Laboratory of Chemical Biology and Organic Chemistry
- Key Laboratory of Applied Chemistry of Henan Universities
- Zhengzhou University
- Zhengzhou, P. R. China
| | - Jingran Wang
- College of Chemistry and Molecular Engineering
- Henan Key Laboratory of Chemical Biology and Organic Chemistry
- Key Laboratory of Applied Chemistry of Henan Universities
- Zhengzhou University
- Zhengzhou, P. R. China
| | - Zhiwei Wang
- College of Chemistry and Molecular Engineering
- Henan Key Laboratory of Chemical Biology and Organic Chemistry
- Key Laboratory of Applied Chemistry of Henan Universities
- Zhengzhou University
- Zhengzhou, P. R. China
| | - Mengmeng Huang
- College of Chemistry and Molecular Engineering
- Henan Key Laboratory of Chemical Biology and Organic Chemistry
- Key Laboratory of Applied Chemistry of Henan Universities
- Zhengzhou University
- Zhengzhou, P. R. China
| | - Beiqi Yan
- College of Chemistry and Molecular Engineering
- Henan Key Laboratory of Chemical Biology and Organic Chemistry
- Key Laboratory of Applied Chemistry of Henan Universities
- Zhengzhou University
- Zhengzhou, P. R. China
| | - Xiuling Cui
- College of Chemistry and Molecular Engineering
- Henan Key Laboratory of Chemical Biology and Organic Chemistry
- Key Laboratory of Applied Chemistry of Henan Universities
- Zhengzhou University
- Zhengzhou, P. R. China
| | - Yusheng Wu
- College of Chemistry and Molecular Engineering
- Henan Key Laboratory of Chemical Biology and Organic Chemistry
- Key Laboratory of Applied Chemistry of Henan Universities
- Zhengzhou University
- Zhengzhou, P. R. China
| | - Yangjie Wu
- College of Chemistry and Molecular Engineering
- Henan Key Laboratory of Chemical Biology and Organic Chemistry
- Key Laboratory of Applied Chemistry of Henan Universities
- Zhengzhou University
- Zhengzhou, P. R. China
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Aryl N-methyliminodiacetic acid (MIDA) boronates from cyclotrimerization of ethynyl MIDA boronate with diynes. Tetrahedron 2013. [DOI: 10.1016/j.tet.2013.07.027] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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