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Berwanger LC, Thumm N, Stirba FP, Gholamipoorfard R, Pawlowski A, Kolkhof P, Volke J, Kollmann M, Wiegard A, Axmann IM. Self-sustained rhythmic behavior of Synechocystis sp. PCC 6803 under continuous light conditions in the absence of light-dark entrainment. PNAS NEXUS 2025; 4:pgaf120. [PMID: 40330109 PMCID: PMC12053491 DOI: 10.1093/pnasnexus/pgaf120] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/08/2023] [Accepted: 03/28/2025] [Indexed: 05/08/2025]
Abstract
Circadian clocks regulate biological activities, providing organisms with a fitness advantage under diurnal conditions by enabling anticipation and adaptation to recurring external changes. Three proteins, KaiA, KaiB, and KaiC, constitute the circadian clock in the cyanobacterial model Synechococcus elongatus PCC 7942. Several techniques established to measure circadian output in Synechococcus yielded comparably weak signals in Synechocystis sp. PCC 6803, a strain important for biotechnological applications. We applied an approach that does not require genetic modifications to monitor the circadian rhythms in Synechococcus and Synechocystis. We placed batch cultures in shake flasks on a sensor detecting backscattered light via noninvasive online measurements. Backscattering oscillated with a period of ∼24 h around the average growth. Wavelet and Fourier transformations are applied to determine the period's significance and length. In Synechocystis, oscillations fulfilled the circadian criteria of temperature compensation and entrainment by external stimuli. Remarkably, dilution alone synchronized oscillations. Western blotting revealed that the backscatter was ∼6.5 h phase-delayed in comparison to KaiC3 phosphorylation.
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Affiliation(s)
- Lutz Claus Berwanger
- Synthetic Microbiology, Heinrich Heine University Düsseldorf, Düsseldorf 40225, Germany
| | - Nikolaus Thumm
- Synthetic Microbiology, Heinrich Heine University Düsseldorf, Düsseldorf 40225, Germany
| | - Florian Pascal Stirba
- Synthetic Microbiology, Heinrich Heine University Düsseldorf, Düsseldorf 40225, Germany
| | | | - Alice Pawlowski
- Synthetic Microbiology, Heinrich Heine University Düsseldorf, Düsseldorf 40225, Germany
| | - Petra Kolkhof
- Mathematical Modelling of Biological Systems, Heinrich Heine University Düsseldorf, Düsseldorf 40225, Germany
| | - Jeannine Volke
- Plant Biochemistry, Heinrich Heine University Düsseldorf, Düsseldorf 40225, Germany
| | - Markus Kollmann
- Mathematical Modelling of Biological Systems, Heinrich Heine University Düsseldorf, Düsseldorf 40225, Germany
| | - Anika Wiegard
- Synthetic Microbiology, Heinrich Heine University Düsseldorf, Düsseldorf 40225, Germany
| | - Ilka Maria Axmann
- Synthetic Microbiology, Heinrich Heine University Düsseldorf, Düsseldorf 40225, Germany
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Tsujimoto R, Kamiya N, Fujita Y. Identification of acis-acting element in nitrogen fixation genes recognized by CnfR in the nonheterocystous nitrogen-fixing cyanobacteriumLeptolyngbya boryana. Mol Microbiol 2016; 101:411-24. [DOI: 10.1111/mmi.13402] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 04/18/2016] [Indexed: 01/26/2023]
Affiliation(s)
- Ryoma Tsujimoto
- Graduate School of Bioagricultural Sciences; Nagoya University, Furo-cho; Chikusa-ku Nagoya 464-8601 Japan
| | - Narumi Kamiya
- School of Agricultural Sciences; Nagoya University, Furo-cho; Chikusa-ku Nagoya 464-8601 Japan
| | - Yuichi Fujita
- Graduate School of Bioagricultural Sciences; Nagoya University, Furo-cho; Chikusa-ku Nagoya 464-8601 Japan
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Comparative analysis of kdp and ktr mutants reveals distinct roles of the potassium transporters in the model cyanobacterium Synechocystis sp. strain PCC 6803. J Bacteriol 2014; 197:676-87. [PMID: 25313394 DOI: 10.1128/jb.02276-14] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Photoautotrophic bacteria have developed mechanisms to maintain K(+) homeostasis under conditions of changing ionic concentrations in the environment. Synechocystis sp. strain PCC 6803 contains genes encoding a well-characterized Ktr-type K(+) uptake transporter (Ktr) and a putative ATP-dependent transporter specific for K(+) (Kdp). The contributions of each of these K(+) transport systems to cellular K(+) homeostasis have not yet been defined conclusively. To verify the functionality of Kdp, kdp genes were expressed in Escherichia coli, where Kdp conferred K(+) uptake, albeit with lower rates than were conferred by Ktr. An on-chip microfluidic device enabled monitoring of the biphasic initial volume recovery of single Synechocystis cells after hyperosmotic shock. Here, Ktr functioned as the primary K(+) uptake system during the first recovery phase, whereas Kdp did not contribute significantly. The expression of the kdp operon in Synechocystis was induced by extracellular K(+) depletion. Correspondingly, Kdp-mediated K(+) uptake supported Synechocystis cell growth with trace amounts of external potassium. This induction of kdp expression depended on two adjacent genes, hik20 and rre19, encoding a putative two-component system. The circadian expression of kdp and ktr peaked at subjective dawn, which may support the acquisition of K(+) required for the regular diurnal photosynthetic metabolism. These results indicate that Kdp contributes to the maintenance of a basal intracellular K(+) concentration under conditions of limited K(+) in natural environments, whereas Ktr mediates fast potassium movements in the presence of greater K(+) availability. Through their distinct activities, both Ktr and Kdp coordinate the responses of Synechocystis to changes in K(+) levels under fluctuating environmental conditions.
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Nanatani K, Shijuku T, Akai M, Yukutake Y, Yasui M, Hamamoto S, Onai K, Morishita M, Ishiura M, Uozumi N. Characterization of the role of a mechanosensitive channel in osmotic down shock adaptation in Synechocystis sp PCC 6803. Channels (Austin) 2013; 7:238-42. [PMID: 23764907 DOI: 10.4161/chan.25350] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022] Open
Abstract
Synechocystis sp strain PCC 6803 contains one gene encoding a putative large conductance mechanosensitive channel homolog [named SyMscL (slr0875)]. However, it is unclear whether SyMscL contributes to the adaptation to hypoosmotic stress in Synechocystis. Here we report the in vivo characteristics of SyMscL. SyMscL was mainly expressed in the plasma membrane of Synechocystis. Cell volume monitoring using stopped-flow spectrophotometry showed that ΔsymscL cells swelled more rapidly than wild-type cells under hypoosmotic stress conditions. Expression of symscL was under circadian control, and its peak corresponded to the beginning of subjective night. These results indicate that SyMscL functioned as one component of the osmotic homeostatic regulatory system of the cell coordinating the response of Synechocystis to daily metabolic osmotic fluctuations and environmental changes.
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Affiliation(s)
- Kei Nanatani
- Department of Biomolecular Engineering; Graduate School of Engineering; Tohoku University; Sendai, Japan
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Tsunekawa K, Shijuku T, Hayashimoto M, Kojima Y, Onai K, Morishita M, Ishiura M, Kuroda T, Nakamura T, Kobayashi H, Sato M, Toyooka K, Matsuoka K, Omata T, Uozumi N. Identification and characterization of the Na+/H+ antiporter Nhas3 from the thylakoid membrane of Synechocystis sp. PCC 6803. J Biol Chem 2009; 284:16513-16521. [PMID: 19372598 DOI: 10.1074/jbc.m109.001875] [Citation(s) in RCA: 54] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022] Open
Abstract
Na+/H+ antiporters influence proton or sodium motive force across the membrane. Synechocystis sp. PCC 6803 has six genes encoding Na+/H+ antiporters, nhaS1-5 and sll0556. In this study, the function of NhaS3 was examined. NhaS3 was essential for growth of Synechocystis, and loss of nhaS3 was not complemented by expression of the Escherichia coli Na+/H+ antiporter NhaA. Membrane fractionation followed by immunoblotting as well as immunogold labeling revealed that NhaS3 was localized in the thylakoid membrane of Synechocystis. NhaS3 was shown to be functional over a pH range from pH 6.5 to 9.0 when expressed in E. coli. A reduction in the copy number of nhaS3 in the Synechocystis genome rendered the cells more sensitive to high Na+ concentrations. NhaS3 had no K+/H+ exchange activity itself but enhanced K+ uptake from the medium when expressed in an E. coli potassium uptake mutant. Expression of nhaS3 increased after shifting from low CO2 to high CO2 conditions. Expression of nhaS3 was also found to be controlled by the circadian rhythm. Gene expression peaked at the beginning of subjective night. This coincided with the time of the lowest rate of CO2 consumption caused by the ceasing of O2-evolving photosynthesis. This is the first report of a Na+/H+ antiporter localized in thylakoid membrane. Our results suggested a role of NhaS3 in the maintenance of ion homeostasis of H+, Na+, and K+ in supporting the conversion of photosynthetic products and in the supply of energy in the dark.
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Affiliation(s)
- Kenta Tsunekawa
- Laboratory of Molecular Plant Physiology, Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya 464-8601
| | - Toshiaki Shijuku
- From the Department of Biomolecular Engineering, Graduate School of Engineering, Tohoku University, Aobayama 6-6-07, Sendai 980-8579
| | - Mitsuo Hayashimoto
- From the Department of Biomolecular Engineering, Graduate School of Engineering, Tohoku University, Aobayama 6-6-07, Sendai 980-8579
| | - Yoichi Kojima
- Department of Environment and Forest Resources Science, Faculty of Agriculture, Shizuoka University, Shizuoka 422-8529
| | - Kiyoshi Onai
- Center for Gene Research, Nagoya University, Nagoya 464-8602
| | | | | | - Teruo Kuroda
- Department of Genome Applied Microbiology, Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, Okayama University, Tsushima, Okayama 700-8530
| | - Tatsunosuke Nakamura
- Department of Microbiology, Niigata University of Pharmacy and Applied Life Sciences, Niigata 950-2081
| | - Hiroshi Kobayashi
- Graduate School of Pharmaceutical Sciences, Chiba University, 1-8-1 Inohana, Chiba 260-8675
| | - Mayuko Sato
- RIKEN Plant Science Center, 1-7-22 Suehirocho, Yokohama 230-0045
| | - Kiminori Toyooka
- RIKEN Plant Science Center, 1-7-22 Suehirocho, Yokohama 230-0045
| | - Ken Matsuoka
- Laboratory of Plant Nutrition, Faculty of Agriculture, Kyushu University, 6-10-1, Hakozaki, Fukuoka 812-8581, Japan
| | - Tatsuo Omata
- Laboratory of Molecular Plant Physiology, Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya 464-8601
| | - Nobuyuki Uozumi
- From the Department of Biomolecular Engineering, Graduate School of Engineering, Tohoku University, Aobayama 6-6-07, Sendai 980-8579.
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