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González-Azcona C, Jiménez-Ruiz S, Santos N, Del Campo-Fernández I, Rojas-Tigasi K, Álvarez-Gómez T, Marañón-Clemente I, Eguizábal P, Abdullahi IN, Alonso CA, Torres C, Lozano C. Culturomics Profiling of Nasal Cavities of European Wild Rabbits on the Iberian Peninsula: Antimicrobial Resistance and Detection of Microorganisms of Public Health Interest. Pathogens 2025; 14:317. [PMID: 40333078 PMCID: PMC12030254 DOI: 10.3390/pathogens14040317] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2025] [Revised: 03/08/2025] [Accepted: 03/13/2025] [Indexed: 05/09/2025] Open
Abstract
Background: European wild rabbits (Oryctolagus cuniculus) are closely connected to the natural environment and might be a potential source of pathogenic bacteria and/or antimicrobial-resistant bacteria. The objective was to identify the bacterial community (species and genera) that colonizes the nasal cavities of European wild rabbits as well as to study the antimicrobial resistance (AMR) phenotypes of bacteria of public health interest. Methods: A total of 147 nasal swabs individually collected from wild rabbits in Spain and Portugal (between 2022 and 2024) were studied. Samples were inoculated in different culture media, and isolates were identified by MALDI-TOF. The AMR phenotypes of staphylococci, mammaliicocci, enterococci and Enterobacterales were evaluated by the disk-diffusion method. Results: Overall, 557 non-repetitive isolates were obtained (1 isolate per species and AMR phenotype of each animal). A wide diversity of genera (n = 40) and species (n = 90) was found. Staphylococcus (21.2%), Mammaliicoccus (11.7%), Enterococcus (23.3%), Enterobacter (9.2%), Citrobacter (4.5%) and Escherichia (5.9%) were the most detected genera. Most animals presented more than one genera (78.9%), and in 15.7% of them, at least five genera were identified. Susceptibility to all antimicrobials tested was found in 37.2%, 38.5% and 51.6% of staphylococci/mammaliicocci, enterococci and Escherichia coli isolates; moreover, multidrug resistance was detected in 10.4%, 14.6% and 9.6% of these groups of bacteria. Moreover, important species of pathogenic bacteria were found, such as Yersinia enterolocolitica (0.5%) and Bordetella bronchiseptica (0.2%), among others. Conclusions: A high bacterial diversity was detected in the nasal cavities of European wild rabbits from the Iberian Peninsula, including pathogenic species and/or resistant strains of public health interest.
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Affiliation(s)
- Carmen González-Azcona
- Area of Biochemistry and Molecular Biology, OneHealth-UR Research Group, University of La Rioja, 26006 Logroño, Spain; (C.G.-A.); (I.D.C.-F.); (K.R.-T.); (T.Á.-G.); (I.M.-C.); (P.E.); (I.N.A.)
| | - Saúl Jiménez-Ruiz
- Departamento de Sanidad Animal, Grupo de Investigación en Sanidad Animal y Zoonosis (GISAZ), UIC Zoonosis y Enfermedades Emergentes ENZOEM, Universidad de Córdoba, 14014 Córdoba, Spain;
| | - Nuno Santos
- Centro Investigação Biodiversidade e Recursos Genéticos (CIBIO), Laboratório Associado (InBIO), Universidade do Porto, 4485-661 Vairão, Portugal;
| | - Inés Del Campo-Fernández
- Area of Biochemistry and Molecular Biology, OneHealth-UR Research Group, University of La Rioja, 26006 Logroño, Spain; (C.G.-A.); (I.D.C.-F.); (K.R.-T.); (T.Á.-G.); (I.M.-C.); (P.E.); (I.N.A.)
| | - Katherine Rojas-Tigasi
- Area of Biochemistry and Molecular Biology, OneHealth-UR Research Group, University of La Rioja, 26006 Logroño, Spain; (C.G.-A.); (I.D.C.-F.); (K.R.-T.); (T.Á.-G.); (I.M.-C.); (P.E.); (I.N.A.)
| | - Tamara Álvarez-Gómez
- Area of Biochemistry and Molecular Biology, OneHealth-UR Research Group, University of La Rioja, 26006 Logroño, Spain; (C.G.-A.); (I.D.C.-F.); (K.R.-T.); (T.Á.-G.); (I.M.-C.); (P.E.); (I.N.A.)
| | - Irene Marañón-Clemente
- Area of Biochemistry and Molecular Biology, OneHealth-UR Research Group, University of La Rioja, 26006 Logroño, Spain; (C.G.-A.); (I.D.C.-F.); (K.R.-T.); (T.Á.-G.); (I.M.-C.); (P.E.); (I.N.A.)
| | - Paula Eguizábal
- Area of Biochemistry and Molecular Biology, OneHealth-UR Research Group, University of La Rioja, 26006 Logroño, Spain; (C.G.-A.); (I.D.C.-F.); (K.R.-T.); (T.Á.-G.); (I.M.-C.); (P.E.); (I.N.A.)
| | - Idris Nasir Abdullahi
- Area of Biochemistry and Molecular Biology, OneHealth-UR Research Group, University of La Rioja, 26006 Logroño, Spain; (C.G.-A.); (I.D.C.-F.); (K.R.-T.); (T.Á.-G.); (I.M.-C.); (P.E.); (I.N.A.)
- Department of Medical Laboratory Science, College of Medical Sciences, Ahmadu Bello University, Zaria 810107, Nigeria
| | - Carla Andrea Alonso
- Servicio de Análisis Clínicos, Laboratorio de Microbiología, Hospital San Pedro, 26006 Logroño, Spain;
| | - Carmen Torres
- Area of Biochemistry and Molecular Biology, OneHealth-UR Research Group, University of La Rioja, 26006 Logroño, Spain; (C.G.-A.); (I.D.C.-F.); (K.R.-T.); (T.Á.-G.); (I.M.-C.); (P.E.); (I.N.A.)
| | - Carmen Lozano
- Area of Biochemistry and Molecular Biology, OneHealth-UR Research Group, University of La Rioja, 26006 Logroño, Spain; (C.G.-A.); (I.D.C.-F.); (K.R.-T.); (T.Á.-G.); (I.M.-C.); (P.E.); (I.N.A.)
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Fan C, Xue H, Xu J, Wang S, Wu M, Chen L, Xu L. Host-Specific Differences in Gut Microbiota Between Cricetulus barabensis and Phodopus sungorus. Curr Microbiol 2023; 80:149. [PMID: 36971869 DOI: 10.1007/s00284-023-03274-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2022] [Accepted: 03/17/2023] [Indexed: 03/29/2023]
Abstract
Gut microbiota plays an important role in the health of the host and is usually associated with the physiological processes of animals. Both host-specific factors and environmental factors are involved in the shaping of the gut microbial community, and it is necessary to identify the host-dominated differences in gut microbiota among animal species to better explain how they affect the choice of life history strategies in hosts. Here, striped hamsters Cricetulus barabensis and Djungarian hamsters Phodopus sungorus were housed under the same controlled conditions, and fecal samples were collected to compare gut microbiota. A higher Shannon index was observed in striped hamsters than in Djungarian hamsters. Linear discriminant analysis of effect size showed enrichment of the family Lachnospiraceae and genera Muribaculum and Oscillibacter in striped hamsters, with the enrichment of family Erysipelotrichaceae and genus Turicibacter in Djungarian hamsters. Among the top 10 amplicon sequence variants (ASVs), eight showed significantly different relative abundance between the two hamster species. The positive correlations and average degree in the co-occurrence network of striped hamsters were less than those of Djungarian hamsters, showing different complexity of synergistic effects among the gut bacteria. The gut microbial community of striped hamsters had a higher R2 value than that of Djungarian hamsters when fitted with a neutral community model. These differences have a degree of consistency with the variation in the lifestyles of the two hamster species. The study provides insights into the understanding of gut microbiota and its connections with rodent hosts.
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Affiliation(s)
- Chao Fan
- School of Life Sciences, Qufu Normal University, Qufu, Shandong, China.
| | - Huiliang Xue
- School of Life Sciences, Qufu Normal University, Qufu, Shandong, China
| | - Jinhui Xu
- School of Life Sciences, Qufu Normal University, Qufu, Shandong, China
| | - Shuo Wang
- School of Life Sciences, Qufu Normal University, Qufu, Shandong, China
| | - Ming Wu
- School of Life Sciences, Qufu Normal University, Qufu, Shandong, China
| | - Lei Chen
- School of Life Sciences, Qufu Normal University, Qufu, Shandong, China
| | - Laixiang Xu
- School of Life Sciences, Qufu Normal University, Qufu, Shandong, China
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Takeda T, Asaoka D, Ogiya S, Akashi K, Abe D, Suzuki M, Akazawa Y, Ueda K, Ueyama H, Shibuya T, Osada T, Hojo M, Hirai S, Ueki R, Nagahara A. A Case of Yersinia enterocolitica Enteritis Diagnosed with Erythema Nodosum. Intern Med 2022; 62:1479-1485. [PMID: 36198596 DOI: 10.2169/internalmedicine.0489-22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 02/25/2023] Open
Abstract
We herein report a rare case of Yersinia enterocolitica enteritis with a fever and abdominal pain followed by erythema nodosum (EN) a few days later. The diagnosis was confirmed based on characteristic colonoscopy and computed tomography findings, pathology, and mucosal culture. Yersinia enteritis is a curable disease provided a proper diagnosis and treatment are performed. Although EN is a rare clinical course, it should still be considered as a differential diagnosis.
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Affiliation(s)
- Tsutomu Takeda
- Department of Gastroenterology, Juntendo University School of Medicine, Japan
| | - Daisuke Asaoka
- Department of Gastroenterology, Juntendo Tokyo Koto Geriatric Medical Center, Japan
| | - Sakiko Ogiya
- Department of Dermatology, Juntendo Tokyo Koto Geriatric Medical Center, Japan
| | - Ken Akashi
- Department of Dermatology, Juntendo Tokyo Koto Geriatric Medical Center, Japan
| | - Daiki Abe
- Department of Gastroenterology, Juntendo University School of Medicine, Japan
| | - Maiko Suzuki
- Department of Gastroenterology, Juntendo Tokyo Koto Geriatric Medical Center, Japan
| | - Yoichi Akazawa
- Department of Gastroenterology, Juntendo University School of Medicine, Japan
| | - Kumiko Ueda
- Department of Gastroenterology, Juntendo University School of Medicine, Japan
| | - Hiroya Ueyama
- Department of Gastroenterology, Juntendo University School of Medicine, Japan
| | - Tomoyoshi Shibuya
- Department of Gastroenterology, Juntendo University School of Medicine, Japan
| | - Taro Osada
- Department of Gastroenterology, Juntendo University School of Medicine, Japan
| | - Mariko Hojo
- Department of Gastroenterology, Juntendo University School of Medicine, Japan
| | - Shu Hirai
- Department of Human Pathology, Juntendo Tokyo Koto Geriatric Medical Center, Japan
| | - Rie Ueki
- Department of Dermatology, Juntendo Tokyo Koto Geriatric Medical Center, Japan
| | - Akihito Nagahara
- Department of Gastroenterology, Juntendo University School of Medicine, Japan
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Bozcal E. A general view on virulence determinants and infection strategies of Yersinia enterocolitica. MINERVA BIOTECNOL 2020. [DOI: 10.23736/s1120-4826.19.02582-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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Varriale L, Russo TP, Pace A, Mediatore S, Borrelli L, Santaniello A, Menna LF, Fioretti A, Dipineto L. Microbiological survey of sugar gliders (Petaurus breviceps) kept as pets in Italy. Lett Appl Microbiol 2020; 69:399-402. [PMID: 31618795 DOI: 10.1111/lam.13233] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2019] [Revised: 10/03/2019] [Accepted: 10/06/2019] [Indexed: 12/29/2022]
Abstract
The sugar glider (Petaurus breviceps) is a small, arboreal, nocturnal, gliding mammalian possum belonging to the marsupial infraclass. Exotic marsupials, including sugar gliders, are becoming popular companion pets and, consequently, the risk of potential infections that can be transmitted to humans should be investigated. Data on the role of the sugar glider as a possible carrier of pathogenic and zoonotic bacteria are scarce and fragmentary. Therefore, this study is aimed at evaluating the prevalence of potentially zoonotic bacteria (Salmonella spp., Escherichia coli, Campylobacter spp., Pseudomonas spp., Klebsiella spp., Listeria monocytogenes and Yersinia enterocolitica) in 64 sugar gliders kept as pets in Italy. The highest prevalence of infection pertained to members of the family Enterobacteriaceae, in particular Citrobacter spp. (50%), Enterobacter spp. (28·1%) and Klebsiella pneumoniae (15·6%); Pseudomonas aeruginosa was isolated from 10 out of 64 samples (15·6%). All strains of Klebsiella pneumoniae exhibited some level of resistance to multiple antimicrobials (ampicillin, amoxicillin-clavulanic acid and doxycycline). SIGNIFICANCE AND IMPACT OF THE STUDY: The results of this study show that sugar gliders may act as carriers of potentially pathogenic agents for humans and other animal species, therefore caution should be exercised in the handling and contact with these animals.
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Affiliation(s)
- L Varriale
- Department of Veterinary Medicine and Animal Productions, Università degli Studi di Napoli Federico II, Napoli, Italy
| | - T P Russo
- Department of Veterinary Medicine and Animal Productions, Università degli Studi di Napoli Federico II, Napoli, Italy
| | - A Pace
- Department of Veterinary Medicine and Animal Productions, Università degli Studi di Napoli Federico II, Napoli, Italy
| | - S Mediatore
- Department of Veterinary Medicine and Animal Productions, Università degli Studi di Napoli Federico II, Napoli, Italy
| | - L Borrelli
- Department of Veterinary Medicine and Animal Productions, Università degli Studi di Napoli Federico II, Napoli, Italy
| | - A Santaniello
- Department of Veterinary Medicine and Animal Productions, Università degli Studi di Napoli Federico II, Napoli, Italy
| | - L F Menna
- Department of Veterinary Medicine and Animal Productions, Università degli Studi di Napoli Federico II, Napoli, Italy
| | - A Fioretti
- Department of Veterinary Medicine and Animal Productions, Università degli Studi di Napoli Federico II, Napoli, Italy
| | - L Dipineto
- Department of Veterinary Medicine and Animal Productions, Università degli Studi di Napoli Federico II, Napoli, Italy
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Ahmad S, Raza S, Qurat-ul-Ain, Uddin R, Rungrotmongkol T, Azam SS. From phylogeny to protein dynamics: A computational hierarchical quest for potent drug identification against an emerging enteropathogen “Yersinia enterocolitica”. J Mol Liq 2018; 265:372-389. [DOI: 10.1016/j.molliq.2018.06.013] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
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Identification of Yersinia at the Species and Subspecies Levels Is Challenging. CURRENT CLINICAL MICROBIOLOGY REPORTS 2018. [DOI: 10.1007/s40588-018-0088-8] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
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