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Eremina OE, Yarenkov NR, Kapitanova OO, Zelenetskaya AS, Smirnov EA, Shekhovtsova TN, Goodilin EA, Veselova IA. Molecular Immobilization and Resonant Raman Amplification by Complex-Loaded Enhancers (MIRRACLE) on copper (II)-chitosan-modified SERS-active metallic nanostructured substrates for multiplex determination of dopamine, norepinephrine, and epinephrine. Mikrochim Acta 2022; 189:211. [PMID: 35505261 DOI: 10.1007/s00604-022-05247-z] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2021] [Accepted: 02/22/2022] [Indexed: 11/26/2022]
Abstract
A unique approach based on Molecular Immobilization and Resonant Raman Amplification by Complex-Loaded Enhancers (MIRRACLE) on copper (II)-chitosan-modified SERS-active metallic nanostructured substrates is proposed for sensitive and rapid determination of the catecholamines (CA) dopamine, norepinephrine, and epinephrine. The ternary (CA)2Cu(4AAP)2 complexes were characterized by the appearance of new absorbance bands at 555, 600, and 500 nm for dopamine, norepinephrine, and epinephrine, respectively. The new absorbance band matched with a broad surface plasmon resonance band of utilized silver nanoparticles: 450-600 nm, and 633 excitation wavelength. We observed enhancement factors up to 3.6·106 due to the additional resonant enhancement. The multiplexing capabilities of quantitative spectral unmixing for Raman spectra of a group of CAs, which differ by only either hydroxy or methyl group, at the fingerprint region were successfully demonstrated with the direct classic least squares model. The achieved nM limits of detection with only 1.5 mW laser power and analysis of spiked human blood plasma samples proved the possibility of the multiplex determination of the catecholamines at the level of reference concentrations in the blood of healthy people as well as promise for the future facilitation in the precision diagnosis of neuroendocrine tumors and neurodegenerative diseases.
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Affiliation(s)
- Olga E Eremina
- Chemistry Department, Lomonosov Moscow State University, Moscow, 119991, Russia.
| | - Nikita R Yarenkov
- Chemistry Department, Lomonosov Moscow State University, Moscow, 119991, Russia
| | - Olesya O Kapitanova
- Chemistry Department, Lomonosov Moscow State University, Moscow, 119991, Russia
| | | | - Evgeny A Smirnov
- Chemistry Department, Lomonosov Moscow State University, Moscow, 119991, Russia
| | | | - Eugene A Goodilin
- Chemistry Department, Lomonosov Moscow State University, Moscow, 119991, Russia
- Faculty of Materials Science, Lomonosov Moscow State University, Moscow, 119991, Russia
| | - Irina A Veselova
- Chemistry Department, Lomonosov Moscow State University, Moscow, 119991, Russia
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2
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Zhao T, Beckwith JS, Amin MJ, Pálmai M, Snee PT, Tien M, Yang H. Leveraging lifetime information to perform real-time 3D single-particle tracking in noisy environments. J Chem Phys 2021; 155:164201. [PMID: 34717352 DOI: 10.1063/5.0063634] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
A microscopy platform that leverages the arrival time of individual photons to enable 3D single-particle tracking of fast-moving (translational diffusion coefficient of ≃3.3 µm2/s) particles in high-background environments is reported here. It combines a hardware-based time-gating module, which enables the rate of photon processing to be as high as 100 MHz, with a two-photon-excited 3D single-particle tracking confocal microscope to enable high sample penetration depth. Proof-of-principle experiments where single quantum dots are tracked in solutions containing dye-stained cellulose, are shown with tracking performance markedly improved using the hardware-based time-gating module. Such a microscope design is anticipated to be of use to a variety of communities who wish to track single particles in cellular environments, which commonly have high fluorescence and scattering background.
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Affiliation(s)
- Tian Zhao
- Department of Chemistry, Princeton University, Princeton, New Jersey 08544, USA
| | - Joseph S Beckwith
- Department of Chemistry, Princeton University, Princeton, New Jersey 08544, USA
| | - M Junaid Amin
- Department of Chemistry, Princeton University, Princeton, New Jersey 08544, USA
| | - Marcell Pálmai
- Department of Chemistry, University of Illinois at Chicago, Chicago, Illinois 60607-7061, USA
| | - Preston T Snee
- Department of Chemistry, University of Illinois at Chicago, Chicago, Illinois 60607-7061, USA
| | - Ming Tien
- Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, Pennsylvania 16802, USA
| | - Haw Yang
- Department of Chemistry, Princeton University, Princeton, New Jersey 08544, USA
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3
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Roy S, Mondal JA. Kosmotropic Electrolyte (Na 2CO 3, NaF) Perturbs the Air/Water Interface through Anion Hydration Shell without Forming a Well-Defined Electric Double Layer. J Phys Chem B 2021; 125:3977-3985. [PMID: 33876932 DOI: 10.1021/acs.jpcb.0c11024] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The ion-driven electric double layer (EDL) and the structural transformation of interfacial water are implicated in unusual reaction kinetics at the air/water interface. By combining heterodyne-detected vibrational sum frequency generation (HD-VSFG) with differential spectroscopy involving simultaneous curve fitting (DS-SCF) analysis, we retrieve electrolyte (Na2CO3 and NaF)-correlated OH-stretch spectra of water at the air/water interface. Vibrational mapping of the perturbed interfacial water with the hydration shell spectra (obtained by DS-SCF analysis of Raman spectra) of the corresponding anion discloses that the kosmotropic electrolytes do not form well-defined EDL at the air/water interface. Instead, the interfacial water forms a stronger hydrogen-bond with the surface-expelled anions (CO32- and F-) and becomes more inhomogeneous than the pristine air/water interface. Together, the results reveal that the perturbation of interfacial water by the kosmotropic electrolyte is a "local phenomenon" confined within the hydration shell of the surface-expelled anion.
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Affiliation(s)
- Subhadip Roy
- Radiation & Photochemistry Division, Bhabha Atomic Research Centre, Homi Bhabha National Institute, Trombay, Trombay, Mumbai 400085, India
| | - Jahur Alam Mondal
- Radiation & Photochemistry Division, Bhabha Atomic Research Centre, Homi Bhabha National Institute, Trombay, Trombay, Mumbai 400085, India
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4
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Wang Y, Li F, Dou Z, Sun C, Fang W, Men Z. Resonance enhancement stimulated Raman scattering of O–H stretching vibration in water molecule. J Mol Liq 2021. [DOI: 10.1016/j.molliq.2020.114722] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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5
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Sherman LM, Petrov AP, Karger LFP, Tetrick MG, Dovichi NJ, Camden JP. A surface-enhanced Raman spectroscopy database of 63 metabolites. Talanta 2020; 210:120645. [PMID: 31987216 DOI: 10.1016/j.talanta.2019.120645] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2019] [Revised: 12/03/2019] [Accepted: 12/12/2019] [Indexed: 10/25/2022]
Abstract
Metabolomics, the study of metabolic profiles in a biological sample, has seen rapid growth due to advances in measurement technologies such as mass spectrometry (MS). While MS metabolite reference libraries have been generated for metabolomics applications, mass spectra alone are unable to unambiguously identify many metabolites in a sample; these unidentified compounds are typically annotated as "features". Surface-enhanced Raman spectroscopy (SERS) is an interesting technology for metabolite identification based on vibrational spectra. However, no reports have been published that present SERS metabolite spectra from chemical libraries. In this paper, we demonstrate that an untargeted approach utilizing citrate-capped silver nanoparticles yields SERS spectra for 20% of 80 compounds chosen randomly from a commercial metabolite library. Furthermore, prescreening of the metabolites according to chemical functionality allowed for the efficient identification of samples within the library that yield distinctive SERS spectra under our experimental conditions. Last, we present a reference database of 63 metabolite SERS spectra for use as an identification tool in metabolomics studies; this set includes 30 metabolites that have not had previously published SERS spectra.
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Affiliation(s)
- Lindy M Sherman
- Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN, 46556-5670, United States.
| | - Alexander P Petrov
- Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN, 46556-5670, United States
| | - Leonhard F P Karger
- Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN, 46556-5670, United States
| | - Maxwell G Tetrick
- Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN, 46556-5670, United States
| | - Norman J Dovichi
- Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN, 46556-5670, United States
| | - Jon P Camden
- Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN, 46556-5670, United States
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6
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Rolinger L, Rüdt M, Hubbuch J. A critical review of recent trends, and a future perspective of optical spectroscopy as PAT in biopharmaceutical downstream processing. Anal Bioanal Chem 2020; 412:2047-2064. [PMID: 32146498 PMCID: PMC7072065 DOI: 10.1007/s00216-020-02407-z] [Citation(s) in RCA: 35] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2019] [Revised: 01/06/2020] [Accepted: 01/10/2020] [Indexed: 12/01/2022]
Abstract
As competition in the biopharmaceutical market gets keener due to the market entry of biosimilars, process analytical technologies (PATs) play an important role for process automation and cost reduction. This article will give a general overview and address the recent innovations and applications of spectroscopic methods as PAT tools in the downstream processing of biologics. As data analysis strategies are a crucial part of PAT, the review discusses frequently used data analysis techniques and addresses data fusion methodologies as the combination of several sensors is moving forward in the field. The last chapter will give an outlook on the application of spectroscopic methods in combination with chemometrics and model predictive control (MPC) for downstream processes. Graphical abstract.
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Affiliation(s)
- Laura Rolinger
- Institute of Engineering in Life Sciences, Section IV: Biomolecular Separation Engineering, Karlsruhe Institute of Technology, Fritz-Haber-Weg 2, 76131, Karlsruhe, Germany
| | - Matthias Rüdt
- Institute of Engineering in Life Sciences, Section IV: Biomolecular Separation Engineering, Karlsruhe Institute of Technology, Fritz-Haber-Weg 2, 76131, Karlsruhe, Germany
| | - Jürgen Hubbuch
- Institute of Engineering in Life Sciences, Section IV: Biomolecular Separation Engineering, Karlsruhe Institute of Technology, Fritz-Haber-Weg 2, 76131, Karlsruhe, Germany.
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7
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Li F, Wang Y, Li Z, Men Z, Sun C. Enhanced Stimulated Raman Scattering by a Pressure-Controlled Shock Wave in Liquid Water. J Phys Chem Lett 2019; 10:4812-4816. [PMID: 31390212 DOI: 10.1021/acs.jpclett.9b01956] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Stimulated Raman scattering (SRS) is observed using a Nd:YAG laser in liquid water at both forward and backward directions under different pressures. The spectra at atmospheric pressure and high pressure exhibit different characteristic features. For high pressure, the main SRS peak (about 3400 cm-1) of liquid water shifts to low frequency. Interestingly, a new peak is observed in both directions. The position of the new peak is lower than that at atmospheric pressure, which belongs to strong hydrogen bonds. Especially, a low peak is obtained at around 3140 cm-1 in the backward direction at 400 MPa, indicating the formation of an ice-like structure. In addition, the normalized SRS intensity of high pressure is higher than that of atmospheric pressure. These results indicate that high pressure can significantly enhance the SRS of water molecules. The enhancement mechanism is attributed to the long duration and slightly slow velocity of the shock wave induced by high pressure.
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Affiliation(s)
- Fabing Li
- Coherent Light and Atomic and Molecular Spectroscopy Laboratory, College of Physics, Jilin University, Changchun 130012, China
| | - Ying Wang
- Coherent Light and Atomic and Molecular Spectroscopy Laboratory, College of Physics, Jilin University, Changchun 130012, China
| | - Zhanlong Li
- Coherent Light and Atomic and Molecular Spectroscopy Laboratory, College of Physics, Jilin University, Changchun 130012, China
| | - Zhiwei Men
- Coherent Light and Atomic and Molecular Spectroscopy Laboratory, College of Physics, Jilin University, Changchun 130012, China
| | - Chenglin Sun
- Coherent Light and Atomic and Molecular Spectroscopy Laboratory, College of Physics, Jilin University, Changchun 130012, China
- Key Laboratory of Physics and Technology for Advanced Batteries, College of Physics, Jilin University, Changchun 130012, China
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8
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Hauswald W, Förster R, Popp J, Heintzmann R. Thermal illumination limits in 3D Raman microscopy: A comparison of different sample illumination strategies to obtain maximum imaging speed. PLoS One 2019; 14:e0220824. [PMID: 31408502 PMCID: PMC6692011 DOI: 10.1371/journal.pone.0220824] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2019] [Accepted: 07/23/2019] [Indexed: 11/18/2022] Open
Abstract
Confocal Raman microscopy is a powerful tool for material science and biomedical research. However, the low Raman scattering cross-section limits the working speed, which reduces the applicability for large and sensitive samples. Here, we discuss the fundamental physical limits of Raman spectroscopy with respect to signal-to-noise, sample load and how to achieve maximal imaging speed. For this, we develop a simple model to describe arbitrary far field light microscopes and their thermal influence on the sample. This model is used to compare the practical applicability of point- and line-confocal microscopes as well as wide-field-, light sheet- and light line illumination, for the measurement of 3D biological samples. The parallelization degree of the illumination can positively affect the imaging speed as long as it is not limited by thermal sample heating. In case of heat build-up inside the sample, the advantages of parallelization can be lost due to the required attenuation of excitation and the working speed can drop below that of a sequential method. We show that for point like illumination, the exposure time is thermally not as critical for the sample as the irradiance, while for volume like illumination, the exposure time and irradiance result in the same thermal effect. The results of our theoretical study are experimentally confirmed and suggest new concepts of Raman microscopy, thus extending its applicability. The developed model can be applied to Raman imaging as well as to other modes (e.g. two- or three- photon imaging, STED, PALM/STORM, MINFLUX) where thermal effects impose a practical limit due to the high irradiance required.
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Affiliation(s)
- Walter Hauswald
- Institute of Physical Chemistry and Abbe Center of Photonics, Friedrich Schiller University Jena, Jena, Germany
- Leibniz Institute of Photonic Technology, Jena, Germany
| | - Ronny Förster
- Leibniz Institute of Photonic Technology, Jena, Germany
| | - Jürgen Popp
- Institute of Physical Chemistry and Abbe Center of Photonics, Friedrich Schiller University Jena, Jena, Germany
- Leibniz Institute of Photonic Technology, Jena, Germany
| | - Rainer Heintzmann
- Institute of Physical Chemistry and Abbe Center of Photonics, Friedrich Schiller University Jena, Jena, Germany
- Leibniz Institute of Photonic Technology, Jena, Germany
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9
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Brinatti Vazquez GD, Martínez OE, Martín Cabaleiro J. Three-dimensional confocal Raman temperature characterization of electrokinetically pumped microchannels. APPLIED OPTICS 2019; 58:5556-5562. [PMID: 31504027 DOI: 10.1364/ao.58.005556] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/04/2019] [Accepted: 06/14/2019] [Indexed: 06/10/2023]
Abstract
A novel method for noninvasive, three-dimensional temperature characterization in microfluidic devices is presented. A specially designed confocal microscope was built and used to measure water temperature by sensing the Raman spectrum variations of the liquid. This is achieved by splitting the spectrum in the isosbestic point and detecting it with two photon counters. The difference between the signals of each detector divided by their sum shows a linear dependence with temperature. A fiber-coupled laser beam is used to pump the sample with 25 mW of optical power at 405 nm. This allows a 0.8 K temperature precision and a 9 μm axial resolution using a 1 s integration time. These features make temperature profiling in all dimensions possible, in contrast with previous methods, where the information present in the height of the channel is lost and the whole spectrum needs to be recovered before computing the sample temperature. Using this technique, different geometries of polydimethylsiloxane microchannels sealed with a 150 μm thick glass coverslip were studied, showing that heat flow through the glass is the dominating dissipation mechanism and defines the maximum temperature in the channel. The results show good agreement with previous work found in the literature.
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10
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Saha S, Roy S, Mathi P, Mondal JA. Polyatomic Iodine Species at the Air-Water Interface and Its Relevance to Atmospheric Iodine Chemistry: An HD-VSFG and Raman-MCR Study. J Phys Chem A 2019; 123:2924-2934. [PMID: 30830779 DOI: 10.1021/acs.jpca.9b00828] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
Abstract
Iodine plays a key role in tropospheric ozone destruction, atmospheric new particle formation, as well as growth. Air-water interface happens to be an important reaction site pertaining to such phenomena. However, except iodide (I-), the behavior of other iodine species, for example, triiodide (I3-) and iodate (IO3-, the most abundant iodine species in seawater) at the aqueous interface and their effect on the interfacial water are largely unknown. Using interface-specific vibrational spectroscopy (heterodyne-detected vibrational sum frequency generation), we recorded the imaginary-χ(2) spectra (Imχ(2); χ(2) is the second-order electric susceptibility in OH stretch region) of the air-water interface in the presence of IO3-, I3-, and I- (≤0.3 M) in the aqueous subphase. The Imχ(2) spectra reveal that the chaotropic I3- is the most surface-active anion among the iodine species studied and decreases the vibrational coupling and hydrogen-bonding of interfacial water. Interestingly, the IO3-, even being a kosmotrope, is quite prevalent in the interfacial region and preferentially orients the interfacial water as "H-down" (i.e., water dipole moment is pointed toward the bulk water). Mapping of the OH stretch response of ion-affected water at interface (i.e., ΔImχ(2) = Imχ(2)air-water-iodine salt - Imχ(2)air-water) with that in the hydration shell of the respective ion (hydration shell water response is obtained by Raman multivariate curve resolution spectroscopy) reveals a correlative link between the ion's influence on the interfacial water and their hydration shell structure. The distinct water structure of stronger as well as weaker H-bonding in the hydration shell of the polyatomic IO3- anion promotes the anion to stay at the interfacial region. Thus, the surface prevalence of the iodine species and their effect on the interfacial water are perceived to be crucial for the transfer of iodine from seawater to the atmosphere across the marine boundary layer and the chemistry of iodine at aqueous aerosol surface.
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Affiliation(s)
- Subhamoy Saha
- Radiation & Photochemistry Division , Bhabha Atomic Research Centre, Homi Bhabha National Institute , Trombay, Mumbai 400085 , India
| | - Subhadip Roy
- Radiation & Photochemistry Division , Bhabha Atomic Research Centre, Homi Bhabha National Institute , Trombay, Mumbai 400085 , India
| | - P Mathi
- Radiation & Photochemistry Division , Bhabha Atomic Research Centre, Homi Bhabha National Institute , Trombay, Mumbai 400085 , India
| | - Jahur A Mondal
- Radiation & Photochemistry Division , Bhabha Atomic Research Centre, Homi Bhabha National Institute , Trombay, Mumbai 400085 , India
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11
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Joseph MM, Narayanan N, Nair JB, Karunakaran V, Ramya AN, Sujai PT, Saranya G, Arya JS, Vijayan VM, Maiti KK. Exploring the margins of SERS in practical domain: An emerging diagnostic modality for modern biomedical applications. Biomaterials 2018; 181:140-181. [PMID: 30081304 DOI: 10.1016/j.biomaterials.2018.07.045] [Citation(s) in RCA: 53] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2018] [Revised: 07/16/2018] [Accepted: 07/25/2018] [Indexed: 12/30/2022]
Abstract
Excellent multiplexing capability, molecular specificity, high sensitivity and the potential of resolving complex molecular level biological compositions augmented the diagnostic modality of surface-enhanced Raman scattering (SERS) in biology and medicine. While maintaining all the merits of classical Raman spectroscopy, SERS provides a more sensitive and selective detection and quantification platform. Non-invasive, chemically specific and spatially resolved analysis facilitates the exploration of SERS-based nano probes in diagnostic and theranostic applications with improved clinical outcomes compared to the currently available so called state-of-art technologies. Adequate knowledge on the mechanism and properties of SERS based nano probes are inevitable in utilizing the full potential of this modality for biomedical applications. The safety and efficiency of metal nanoparticles and Raman reporters have to be critically evaluated for the successful translation of SERS in to clinics. In this context, the present review attempts to give a comprehensive overview about the selected medical, biomedical and allied applications of SERS while highlighting recent and relevant outcomes ranging from simple detection platforms to complicated clinical applications.
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Affiliation(s)
- Manu M Joseph
- Chemical Sciences and Technology Division, CSIR- National Institute for Interdisciplinary Science and Technology (CSIR-NIIST), Pappanamcode, Thiruvananthapuram, Kerala 695019, India
| | - Nisha Narayanan
- Chemical Sciences and Technology Division, CSIR- National Institute for Interdisciplinary Science and Technology (CSIR-NIIST), Pappanamcode, Thiruvananthapuram, Kerala 695019, India; Academy of Scientific and Innovative Research (AcSIR), CSIR-NIIST, Pappanamcode, Thiruvananthapuram, Kerala 695019, India
| | - Jyothi B Nair
- Chemical Sciences and Technology Division, CSIR- National Institute for Interdisciplinary Science and Technology (CSIR-NIIST), Pappanamcode, Thiruvananthapuram, Kerala 695019, India; Academy of Scientific and Innovative Research (AcSIR), CSIR-NIIST, Pappanamcode, Thiruvananthapuram, Kerala 695019, India
| | - Varsha Karunakaran
- Chemical Sciences and Technology Division, CSIR- National Institute for Interdisciplinary Science and Technology (CSIR-NIIST), Pappanamcode, Thiruvananthapuram, Kerala 695019, India; Academy of Scientific and Innovative Research (AcSIR), CSIR-NIIST, Pappanamcode, Thiruvananthapuram, Kerala 695019, India
| | - Adukkadan N Ramya
- Chemical Sciences and Technology Division, CSIR- National Institute for Interdisciplinary Science and Technology (CSIR-NIIST), Pappanamcode, Thiruvananthapuram, Kerala 695019, India; Academy of Scientific and Innovative Research (AcSIR), CSIR-NIIST, Pappanamcode, Thiruvananthapuram, Kerala 695019, India
| | - Palasseri T Sujai
- Chemical Sciences and Technology Division, CSIR- National Institute for Interdisciplinary Science and Technology (CSIR-NIIST), Pappanamcode, Thiruvananthapuram, Kerala 695019, India; Academy of Scientific and Innovative Research (AcSIR), CSIR-NIIST, Pappanamcode, Thiruvananthapuram, Kerala 695019, India
| | - Giridharan Saranya
- Chemical Sciences and Technology Division, CSIR- National Institute for Interdisciplinary Science and Technology (CSIR-NIIST), Pappanamcode, Thiruvananthapuram, Kerala 695019, India; Academy of Scientific and Innovative Research (AcSIR), CSIR-NIIST, Pappanamcode, Thiruvananthapuram, Kerala 695019, India
| | - Jayadev S Arya
- Chemical Sciences and Technology Division, CSIR- National Institute for Interdisciplinary Science and Technology (CSIR-NIIST), Pappanamcode, Thiruvananthapuram, Kerala 695019, India; Academy of Scientific and Innovative Research (AcSIR), CSIR-NIIST, Pappanamcode, Thiruvananthapuram, Kerala 695019, India
| | - Vineeth M Vijayan
- Chemical Sciences and Technology Division, CSIR- National Institute for Interdisciplinary Science and Technology (CSIR-NIIST), Pappanamcode, Thiruvananthapuram, Kerala 695019, India
| | - Kaustabh Kumar Maiti
- Chemical Sciences and Technology Division, CSIR- National Institute for Interdisciplinary Science and Technology (CSIR-NIIST), Pappanamcode, Thiruvananthapuram, Kerala 695019, India; Academy of Scientific and Innovative Research (AcSIR), CSIR-NIIST, Pappanamcode, Thiruvananthapuram, Kerala 695019, India.
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12
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Shokair IR, Johnson MS, Schmitt RL, Sickafoose SM. Concept for maritime near-surface surveillance using water Raman scattering. APPLIED OPTICS 2018; 57:4858-4864. [PMID: 30118103 DOI: 10.1364/ao.57.004858] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/14/2018] [Accepted: 05/11/2018] [Indexed: 06/08/2023]
Abstract
We discuss a maritime surveillance and detection concept based on Raman scattering of water molecules. Using a range-gated scanning lidar that detects Raman scattered photons from water, the absence or change of signal indicates the presence of a non-water object. With sufficient spatial resolution, a two-dimensional outline of the object can be generated by the scanning lidar. Because Raman scattering is an inelastic process with a relatively large wavelength shift for water, this concept avoids the often problematic elastic scattering for objects at or very close to the water surface or from the bottom surface for shallow waters. The maximum detection depth for this concept is limited by the attenuation of the excitation and return Raman light in water. If excitation in the UV is used, fluorescence can be used for discrimination between organic and non-organic objects. In this paper, we present a lidar model for this concept and discuss results of proof-of-concept measurements. Using published cross section values, the model and measurements are in reasonable agreement and show that a sufficient number of Raman photons can be generated for modest lidar parameters to make this concept useful for near-surface detection.
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13
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Raj A, Hamaguchi HO, Witek HA. Polarizability tensor invariants of H 2, HD, and D 2. J Chem Phys 2018; 148:104308. [PMID: 29544338 DOI: 10.1063/1.5011433] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We report an exhaustive compilation of wavelength-dependent matrix elements over the mean polarizability (α¯) and polarizability anisotropy (γ) operators for the rovibrational states of the H2, HD, and D2 molecules together with an accompanying computer program for their evaluation. The matrix elements can be readily evaluated using the provided codes for rovibrational states with J = 0-15 and v = 0-4 and for any laser wavelengths in the interval 182.25-1320.6 nm corresponding to popular, commercially available lasers. The presented results substantially extend the scope of the data available in the literature, both in respect of the rovibrational transitions analyzed and the range of covered laser frequencies. The presented detailed tabulation of accurate polarizability tensor invariants is essential for successful realization of our main long-term goal: developing a universal standard for determining absolute Raman cross sections and absolute Raman intensities in experimental Rayleigh and Raman scattering studies of molecules.
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Affiliation(s)
- Ankit Raj
- Department of Applied Chemistry and Institute of Molecular Science, National Chiao Tung University, Hsinchu 30010, Taiwan
| | - Hiro-O Hamaguchi
- Department of Applied Chemistry and Institute of Molecular Science, National Chiao Tung University, Hsinchu 30010, Taiwan
| | - Henryk A Witek
- Department of Applied Chemistry and Institute of Molecular Science, National Chiao Tung University, Hsinchu 30010, Taiwan
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14
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Ryder AG, Stedmon CA, Harrit N, Bro R. Calibration, standardization, and quantitative analysis of multidimensional fluorescence (MDF) measurements on complex mixtures (IUPAC Technical Report). PURE APPL CHEM 2017. [DOI: 10.1515/pac-2017-0610] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
AbstractThis IUPAC Technical Report describes and compares the currently applied methods for the calibration and standardization of multi-dimensional fluorescence (MDF) spectroscopy data as well as recommendations on the correct use of chemometric methods for MDF data analysis. The paper starts with a brief description of the measurement principles for the most important MDF techniques and a short introduction to the most important applications. Recommendations are provided for instrument calibration, sample preparation and handling, and data collection, as well as the proper use of chemometric data analysis methods.
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Affiliation(s)
- Alan G. Ryder
- Nanoscale Biophotonics Laboratory, School of Chemistry, National University of Ireland, Galway, Ireland
| | - Colin A. Stedmon
- National Institute for Aquatic Resources, Technical University of Denmark, DK-2800, Kgs.Lyngby, Denmark
| | - Niels Harrit
- Nanoscience Center, H. C. Ørsted Institute, Universitetsparken 5, University of Copenhagen, DK-2100, Copenhagen, Denmark
| | - Rasmus Bro
- Department Food Science, Faculty of Life Sciences, University Copenhagen, DK-1958, Frederiksberg, Denmark
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15
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Acosta-Maeda TE, Misra AK, Porter JN, Bates DE, Sharma SK. Remote Raman Efficiencies and Cross-Sections of Organic and Inorganic Chemicals. APPLIED SPECTROSCOPY 2017; 71:1025-1038. [PMID: 27645726 DOI: 10.1177/0003702816668531] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/16/2023]
Abstract
We determined Raman cross-sections of various organic liquids and inorganic polyatomic ions in aqueous solutions with a 532 nm pulsed laser using remote Raman systems developed at the University of Hawaii. Using a calibrated integrating sphere as a light source, we converted the intensity counts in the spectrum of the light from the integrating sphere measured with UH remote Raman instrument to spectral radiance. From these data, a response function of the remote Raman instrument was obtained. With the intensity-calibrated instrument, we collected remote Raman data from a standard 1 mm path length fused silica spectrophotometer cell filled with cyclohexane. The measured value of the differential Raman cross-section for the 801 cm-1 vibrational mode of cyclohexane is 4.55 × 10-30 cm2 sr-1 molecule-1 when excited by a 532 nm laser, in good agreement with the values reported in the literature. Using the measured cyclohexane Raman cross-section as a reference and relative Raman mode intensities of the various ions and organic liquids, we calculated the Raman cross-sections of the strongest Raman lines of nitrate, sulfate, carbonate, phosphate ions, and organic liquids by maintaining same experimental conditions for remote Raman detection. These relative Raman cross-section values will be useful for estimating detection capabilities of remote Raman systems for planetary exploration.
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Affiliation(s)
- Tayro E Acosta-Maeda
- Hawai'i Institute of Geophysics and Planetology, SOEST, University of Hawaii at Manoa, Honolulu, Hawai'i, USA
| | - Anupam K Misra
- Hawai'i Institute of Geophysics and Planetology, SOEST, University of Hawaii at Manoa, Honolulu, Hawai'i, USA
| | - John N Porter
- Hawai'i Institute of Geophysics and Planetology, SOEST, University of Hawaii at Manoa, Honolulu, Hawai'i, USA
| | - David E Bates
- Hawai'i Institute of Geophysics and Planetology, SOEST, University of Hawaii at Manoa, Honolulu, Hawai'i, USA
| | - Shiv K Sharma
- Hawai'i Institute of Geophysics and Planetology, SOEST, University of Hawaii at Manoa, Honolulu, Hawai'i, USA
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16
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Abstract
Stimulated Raman scattering (SRS) describes a family of techniques first discovered and developed in the 1960s. Whereas the nascent history of the technique is parallel to that of laser light sources, recent advances have spurred a resurgence in its use and development that has spanned across scientific fields and spatial scales. SRS is a nonlinear technique that probes the same vibrational modes of molecules that are seen in spontaneous Raman scattering. While spontaneous Raman scattering is an incoherent technique, SRS is a coherent process, and this fact provides several advantages over conventional Raman techniques, among which are much stronger signals and the ability to time-resolve the vibrational motions. Technological improvements in pulse generation and detection strategies have allowed SRS to probe increasingly smaller volumes and shorter time scales. This has enabled SRS research to move from its original domain, of probing bulk media, to imaging biological tissues and single cells at the micro scale, and, ultimately, to characterizing samples with subdiffraction resolution at the nanoscale. In this Review, we give an overview of the history of the technique, outline its basic properties, and present historical and current uses at multiple length scales to underline the utility of SRS to the molecular sciences.
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Affiliation(s)
- Richard C Prince
- Department of Biomedical Engineering, University of California, Irvine , 1436 Natural Sciences II, Irvine, California 92697-2025, United States
| | - Renee R Frontiera
- Department of Chemistry, University of Minnesota, Minneapolis , B-18, 139 Smith Hall, 207 Pleasant Street SE, Minneapolis, Minnesota 55455-0431, United States
| | - Eric O Potma
- Department of Chemistry, University of California, Irvine , 1107 Natural Sciences II, Irvine, California 92697-2025, United States
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17
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Mühlig A, Bocklitz T, Labugger I, Dees S, Henk S, Richter E, Andres S, Merker M, Stöckel S, Weber K, Cialla-May D, Popp J. LOC-SERS: A Promising Closed System for the Identification of Mycobacteria. Anal Chem 2016; 88:7998-8004. [DOI: 10.1021/acs.analchem.6b01152] [Citation(s) in RCA: 64] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Affiliation(s)
- Anna Mühlig
- Leibniz Institute of Photonic Technology (IPHT), Albert-Einstein-Strasse 9, 07745 Jena, Germany
- Institute
for Physical Chemistry and Abbe Center of Photonics, Friedrich-Schiller-University Jena, Helmholtzweg 4, 07743 Jena, Germany
| | - Thomas Bocklitz
- Institute
for Physical Chemistry and Abbe Center of Photonics, Friedrich-Schiller-University Jena, Helmholtzweg 4, 07743 Jena, Germany
| | - Ines Labugger
- Alere Technologies
GmbH, Löbstedter Strasse 103-105, 07743 Jena, Germany
| | - Stefan Dees
- Alere Technologies
GmbH, Löbstedter Strasse 103-105, 07743 Jena, Germany
| | - Sandra Henk
- Alere Technologies
GmbH, Löbstedter Strasse 103-105, 07743 Jena, Germany
| | - Elvira Richter
- MVZ Laboratory Dr. Limbach & Kollegen GbR, Im Breitspiel 15, 69126 Heidelberg, Germany
| | | | | | - Stephan Stöckel
- Institute
for Physical Chemistry and Abbe Center of Photonics, Friedrich-Schiller-University Jena, Helmholtzweg 4, 07743 Jena, Germany
| | - Karina Weber
- Leibniz Institute of Photonic Technology (IPHT), Albert-Einstein-Strasse 9, 07745 Jena, Germany
- Institute
for Physical Chemistry and Abbe Center of Photonics, Friedrich-Schiller-University Jena, Helmholtzweg 4, 07743 Jena, Germany
| | - Dana Cialla-May
- Leibniz Institute of Photonic Technology (IPHT), Albert-Einstein-Strasse 9, 07745 Jena, Germany
- Institute
for Physical Chemistry and Abbe Center of Photonics, Friedrich-Schiller-University Jena, Helmholtzweg 4, 07743 Jena, Germany
| | - Jürgen Popp
- Leibniz Institute of Photonic Technology (IPHT), Albert-Einstein-Strasse 9, 07745 Jena, Germany
- Institute
for Physical Chemistry and Abbe Center of Photonics, Friedrich-Schiller-University Jena, Helmholtzweg 4, 07743 Jena, Germany
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18
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Kloz M, Weißenborn J, Polívka T, Frank HA, Kennis JTM. Spectral watermarking in femtosecond stimulated Raman spectroscopy: resolving the nature of the carotenoid S* state. Phys Chem Chem Phys 2016; 18:14619-28. [DOI: 10.1039/c6cp01464j] [Citation(s) in RCA: 38] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
A new method for recording femtosecond stimulated Raman spectra was developed that dramatically improves and automatizes baseline problems.
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Affiliation(s)
- Miroslav Kloz
- Department of Physics and Astronomy
- VU University Amsterdam
- 1081HV Amsterdam
- The Netherlands
- ELI-Beamlines
| | - Jörn Weißenborn
- Department of Physics and Astronomy
- VU University Amsterdam
- 1081HV Amsterdam
- The Netherlands
| | - Tomáš Polívka
- University of South Bohemia
- 370 05 České Budějovice
- Czech Republic
| | - Harry A. Frank
- Department of Chemistry
- University of Connecticut
- Storrs
- USA
| | - John T. M. Kennis
- Department of Physics and Astronomy
- VU University Amsterdam
- 1081HV Amsterdam
- The Netherlands
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19
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Abstract
This review focuses on the recent advances in SERS and its potential to detect multiple biomolecules in clinical samples.
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Affiliation(s)
- Stacey Laing
- Centre for Molecular Nanometrology
- WestCHEM
- Pure and Applied Chemistry
- University of Strathclyde
- Technology and Innovation Centre
| | - Kirsten Gracie
- Centre for Molecular Nanometrology
- WestCHEM
- Pure and Applied Chemistry
- University of Strathclyde
- Technology and Innovation Centre
| | - Karen Faulds
- Centre for Molecular Nanometrology
- WestCHEM
- Pure and Applied Chemistry
- University of Strathclyde
- Technology and Innovation Centre
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20
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Oh MK, Kang H, Yu NE, Kim BH, Kim J, Lee J, Hyung GW. Ultimate sensing resolution of water temperature by remote Raman spectroscopy. APPLIED OPTICS 2015; 54:2639-2646. [PMID: 25967170 DOI: 10.1364/ao.54.002639] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/21/2014] [Accepted: 02/24/2015] [Indexed: 06/04/2023]
Abstract
The limit of sensing resolution of water temperature by remote Raman spectroscopy was investigated experimentally. A remote Raman spectrometer, which employed a telescope of 20 cm in pupil size and the second harmonic generation (SHG) of a Q-switched Nd:YAG laser, was used for the measurement. By analyzing the broad O-H stretching Raman band located near 3500 cm⁻¹, a parameter which is in second-order polynomial relation with water temperature from 13°C to 50°C could be obtained. The resolution of our remote Raman temperature sensor was better than ±0.2°C with measurement time shorter than 10 s. The influence of the Raman signal's signal-to-noise ratio on the resolution and salinity effect on the accuracy of temperature sensing were also investigated.
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21
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Men Z, Fang W, Li Z, Sun C, Li Z, Wang X. Hydrated-electron resonance enhancement O-H stretching vibration of water hexamer at air-water interface. OPTICS LETTERS 2015; 40:1434-1437. [PMID: 25831351 DOI: 10.1364/ol.40.001434] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
Raman scattering of the O-H stretching vibration mode inside water, as well as near and at the air-water interface, was investigated by laser-induced breakdown (LIB). An intense and characteristic higher wavenumber Raman shift of the O-H vibration was observed at the air-water interface, which was attributed to the hydrated-electron resonance enhancement of the O-H stretching vibration mode of water hexamer. The hydrated electron in the water hexamer structure was formed by excess electrons injected into the gas-like phase with low hydrogen bond order under LIB. The electron-phonon coupled mechanism was discussed.
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22
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Hu Q, Guo H, Lu W, Lü X, Chen Y, Lin L. Raman spectroscopic investigation on aqueous NaCl solutions at temperatures from 273 to 573K: Effect of NaCl on water structure. J Mol Liq 2014. [DOI: 10.1016/j.molliq.2014.08.019] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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23
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Woods DA, Bain CD. Total internal reflection spectroscopy for studying soft matter. SOFT MATTER 2014; 10:1071-1096. [PMID: 24651911 DOI: 10.1039/c3sm52817k] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
Total internal reflection (TIR) spectroscopy is a widely used technique to study soft matter at interfaces. This tutorial review aims to provide researchers with an overview of the principles, experimental design and applications of TIR spectroscopy to enable them to understand how this class of techniques might be used in their research. It also highlights limitations and pitfalls of TIR techniques, which will assist readers in critically analysing the literature. Techniques covered include attenuated total reflection infrared spectroscopy (ATR-IR), TIR fluorescence, TIR Raman scattering and cavity-enhanced techniques. Other related techniques are briefly described.
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Affiliation(s)
- David A Woods
- Department of Chemistry, Durham University, South Road, Durham, UKDH1 3LE.
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24
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Bray A, Chapman R, Plakhotnik T. Accurate measurements of the Raman scattering coefficient and the depolarization ratio in liquid water. APPLIED OPTICS 2013; 52:2503-2510. [PMID: 23670780 DOI: 10.1364/ao.52.002503] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/14/2012] [Accepted: 03/06/2013] [Indexed: 06/02/2023]
Abstract
Despite a long history, the Raman scattering coefficient of water has so far only been measured with 10% uncertainty using a 95% confidence interval. In this paper, we present an experiment where we have achieved 1.5% uncertainty by using a low concentration of Rhodamine 6G in ethanol as a reference along with accurate consideration of polarization-related effects and the geometry of the experimental setup. We have found that the photon-to-photon Raman scattering coefficient of the OH stretching band of liquid water is (1.84±0.03)×10(-4) m(-1) when integrated over the spectral frequency range from 620 to 700 nm while the exciting laser operates at 532 nm. We have also accurately measured the depolarization ratio across this band.
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Affiliation(s)
- Andrew Bray
- School of Mathematics and Physics, The University of Queensland, Brisbane, Queensland 4072, Australia
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25
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Kattawar GW. Genesis and evolution of polarization of light in the ocean [invited]. APPLIED OPTICS 2013; 52:940-948. [PMID: 23400055 DOI: 10.1364/ao.52.000940] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/18/2012] [Accepted: 10/10/2012] [Indexed: 06/01/2023]
Abstract
The radiative transfer of sunlight through the deep oceans of the world is a complex and only partially solved environmental optical problem. Empirically, in situ systematic measurements of key parameters such as polarization of deep open seawater have been very sparse in recent decades. Although we have the necessary equation of transfer to solve this complex problem, until it can be solved explicitly, only approximations and partial analytic solutions are possible in addition to some successful computer modeling. Further complexity is added by the diversity of researchers' interests from academic to international policy making, as well as the ineffective communication between the different disciplines concerned, ranging from mathematics to endangered species. As a result, isolated focused pockets of good data and theory have been developed in recent decades without the needed breadth of understanding. This present review intends to bring together some visual biology and optical physics in order to understand the role of polarization in navigation, communication, and identification of marine animals as well as a possible tool for remotely sensing underwater objects.
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Affiliation(s)
- George W Kattawar
- Department of Physics and Astronomy, Texas A&M University, College Station, Texas 77843-4242, USA.
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26
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Scanning cavity-enhanced droplet spectroscopy: Tuning of the excitation laser for obtaining a continuous Raman spectrum. Chem Phys Lett 2012. [DOI: 10.1016/j.cplett.2012.05.018] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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27
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28
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Demos SG, Raman RN, Yang ST, Negres RA, Schaffers KI, Henesian MA. Measurement of the Raman scattering cross section of the breathing mode in KDP and DKDP crystals. OPTICS EXPRESS 2011; 19:21050-21059. [PMID: 21997113 DOI: 10.1364/oe.19.021050] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
The spontaneous Raman scattering cross sections of the main peaks (related to the A1 vibrational mode) in rapid and conventional grown potassium dihydrogen phosphate and deuterated crystals are measured at 532 nm, 355 nm, and 266 nm. The measurement involves the use of the Raman line of water centered at 3400 cm-1 as a reference to obtain relative values of the cross sections which are subsequently normalized against the known absolute value for water as a function of excitation wavelength. This measurement enables the estimation of the transverse stimulated Raman scattering gain of these nonlinear optical materials in various configurations suitable for frequency conversion and beam control in high-power, large-aperture laser systems.
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Affiliation(s)
- Stavros G Demos
- Lawrence Livermore National Laboratory, 7000 East Ave., Livermore, CA 94551, USA.
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29
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30
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Hill LS, Richardson TL, Profeta LTM, Shaw TJ, Hintz CJ, Twining BS, Lawrenz E, Myrick ML. Construction, figures of merit, and testing of a single-cell fluorescence excitation spectroscopy system. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2010; 81:013103. [PMID: 20113077 PMCID: PMC2816980 DOI: 10.1063/1.3270251] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/20/2009] [Accepted: 11/06/2009] [Indexed: 05/28/2023]
Abstract
Characterization of phytoplankton community composition is critical to understanding the ecology and biogeochemistry of the oceans. One approach to taxonomic characterization takes advantage of differing pigmentation between algal taxa and thus differences in fluorescence excitation spectra. Analyses of bulk water samples, however, may be confounded by interference from chromophoric dissolved organic matter or suspended particulate matter. Here, we describe an instrument that uses a laser trap based on a Nikon TE2000-U microscope to position individual phytoplankton cells for confocal fluorescence excitation spectroscopy, thus avoiding interference from the surrounding medium. Quantitative measurements of optical power give data in the form of photons emitted per photon of exposure for an individual phytoplankton cell. Residence times for individual phytoplankton in the instrument can be as long as several minutes with no substantial change in their fluorescence excitation spectra. The laser trap was found to generate two-photon fluorescence from the organisms so a modification was made to release the trap momentarily during data acquisition. Typical signal levels for an individual cell are in the range of 10(6) photons/s of fluorescence using a monochromated 75 W Xe arc lamp excitation source with a 2% transmission neutral density filter.
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Affiliation(s)
- Laura S Hill
- Department of Chemistry and Biochemistry, University of South Carolina, Columbia, South Carolina 29208, USA
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31
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Lawaetz AJ, Stedmon CA. Fluorescence intensity calibration using the Raman scatter peak of water. APPLIED SPECTROSCOPY 2009; 63:936-940. [PMID: 19678992 DOI: 10.1366/000370209788964548] [Citation(s) in RCA: 427] [Impact Index Per Article: 28.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
Fluorescence data of replicate samples obtained from different fluorescence spectrometers or by the same spectrometer but with different instrument settings can have great intensity differences. In order to compare such data an intensity calibration must be applied. Here we explain a simple calibration method for fluorescence intensity using only the integrated area of a water Raman peak. By applying this method to data from three different instruments, we show that it is possible to remove instrument-dependent intensity factors, and we present results on a unified scale of Raman units. The method presented is a rapid and simple approach suitable for routine measurements with no need for hazardous chemicals.
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Affiliation(s)
- A J Lawaetz
- Dept. Food Science, Faculty of Life Sciences, University Copenhagen, Rolighedsvej 30, DK-1958, Frederiksberg, Denmark.
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32
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Wu DY, Duan S, Liu XM, Xu YC, Jiang YX, Ren B, Xu X, Lin SH, Tian ZQ. Theoretical study of binding interactions and vibrational Raman spectra of water in hydrogen-bonded anionic complexes: (H2O)n- (n = 2 and 3), H2O...X- (X = F, Cl, Br, and I), and H2O...M- (M = Cu, Ag, and Au). J Phys Chem A 2008; 112:1313-21. [PMID: 18215023 DOI: 10.1021/jp0722105] [Citation(s) in RCA: 53] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
Binding interactions and Raman spectra of water in hydrogen-bonded anionic complexes have been studied by using the hybrid density functional theory method (B3LYP) and ab initio (MP2) method. In order to explore the influence of hydrogen bond interactions and the anionic effect on the Raman intensities of water, model complexes, such as the negatively charged water clusters ((H2O)n-, n = 2 and 3), the water...halide anions (H2O...X-, X = F, Cl, Br, and I), and the water-metal atom anionic complexes (H2O...M-, M = Cu, Ag, and Au), have been employed in the present calculations. These model complexes contained different types of hydrogen bonds, such as O-H...X-, O-H...M-, O-H...O, and O-H...e-. In particular, the last one is a dipole-bound electron involved in the anionic water clusters. Our results showed that there exists a large enhancement in the off-resonance Raman intensities of both the H-O-H bending mode and the hydrogen-bonded O-H stretching mode, and the enhancement factor is more significant for the former than for the latter. The reasons for these spectral properties can be attributed to the strong polarization effect of the proton acceptors (X-, M-, O, and e-) in these hydrogen-bonded complexes. We proposed that the strong Raman signal of the H-O-H bending mode may be used as a fingerprint to address the local microstructures of water molecules in the chemical and biological systems.
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Affiliation(s)
- De-Yin Wu
- Department of Chemistry, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, Fujian, People Republic of China.
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33
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Rizi V, Iarlori M, Rocci G, Visconti G. Raman lidar observations of cloud liquid water. APPLIED OPTICS 2004; 43:6440-6453. [PMID: 15617280 DOI: 10.1364/ao.43.006440] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
We report the design and the performances of a Raman lidar for long-term monitoring of tropospheric aerosol backscattering and extinction coefficients, water vapor mixing ratio, and cloud liquid water. We focus on the system's capabilities of detecting Raman backscattering from cloud liquid water. After describing the system components, along with the current limitations and options for improvement, we report examples of observations in the case of low-level cumulus clouds. The measurements of the cloud liquid water content, as well as the estimations of the cloud droplet effective radii and number densities, obtained by combining the extinction coefficient and cloud water content within the clouds, are critically discussed.
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Affiliation(s)
- Vincenzo Rizi
- Dipartimento di Fisica, Università Degli Studi L'Aquila, Via Vetoio Località Coppito, 67010 L'Aquila, Italy.
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34
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Sanabia JE, Goldner LS, Lacaze PA, Hawkins ME. On the Feasibility of Single-Molecule Detection of the Guanosine-Analogue 3-MI. J Phys Chem B 2004. [DOI: 10.1021/jp049901a] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Jason E. Sanabia
- Optical Technology Division, National Institute of Standards and Technology, Gaithersburg, Maryland 20899 and Pediatric Oncology Branch, National Cancer Institute, Bethesda, Maryland 20892
| | - Lori S. Goldner
- Optical Technology Division, National Institute of Standards and Technology, Gaithersburg, Maryland 20899 and Pediatric Oncology Branch, National Cancer Institute, Bethesda, Maryland 20892
| | - Pierre-Antoine Lacaze
- Optical Technology Division, National Institute of Standards and Technology, Gaithersburg, Maryland 20899 and Pediatric Oncology Branch, National Cancer Institute, Bethesda, Maryland 20892
| | - Mary E. Hawkins
- Optical Technology Division, National Institute of Standards and Technology, Gaithersburg, Maryland 20899 and Pediatric Oncology Branch, National Cancer Institute, Bethesda, Maryland 20892
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35
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Gordon HR. Contribution of Raman scattering to water-leaving radiance: a reexamination. APPLIED OPTICS 1999; 38:3166-3174. [PMID: 18319905 DOI: 10.1364/ao.38.003166] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
We have reexamined the contribution of Raman scattering to the water-leaving radiance in case 1 waters by carrying out radiative transfer simulations that combine the latest reported measurements of the absorption coefficient of pure water with direct measurements of the spectral variation of the Raman-scattering coefficient. The resulting contribution of Raman scattering is then compared with experimental measurements of the water-leaving radiance, and the fractional contribution of radiance produced by Raman scattering to the total radiance measured at a given wavelength is determined. The results show that (1) the contribution of Raman scattering to the water-leaving radiance in an ocean of pure seawater is as much as 50-100% larger than earlier predictions, and (2) the Raman contribution does not decay as rapidly with increasing concentrations of chlorophyllouslike pigments C as predicted earlier. In fact, the Raman fraction for C <or= 1 mg/m(3) is approximately >8% at wavelengths of interest in ocean color remote sensing and therefore cannot be ignored in ocean color modeling.
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Affiliation(s)
- H R Gordon
- Department of Physics, University of Miami, Coral Gables, Florida 33124, USA.
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36
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Seaver M, Roselle DC, Pinto JF, Eversole JD. Absolute Emission Spectra from Bacillus subtilis and Escherichia coli Vegetative Cells in Solution. APPLIED OPTICS 1998; 37:5344-7. [PMID: 18286016 DOI: 10.1364/ao.37.005344] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/15/2023]
Abstract
Spectrally resolved emission (270-560 nm) from dilute suspensions of washed Bacillus subtilis and Escherichia coli were measured by use of tunable laser excitation between 270 and 300 nm. Integrated absolute emission cross sections increase with decreasing excitation wavelength and range from 1.8 x 10(-12) to 6.0 x 10(-11) cm(2)/(particle sr). An emission band near 340 nm dominates all observed spectra. At each excitation wavelength spectrally resolved emissions from the E. coli and B. subtilis suspensions are indistinguishable.
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37
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Bartlett JS, Voss KJ, Sathyendranath S, Vodacek A. Raman scattering by pure water and seawater. APPLIED OPTICS 1998; 37:3324-32. [PMID: 18273291 DOI: 10.1364/ao.37.003324] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
Measurements of the magnitude and spectral distribution of the Raman-scattering coefficients of pure water (b(rw)) and seawater (b(rs)) are presented. Two independent measurements of the spectral distribution of the Raman-scattering coefficient of pure water were made for incident wavelengths ranging from 250 to 500 nm. These measurements revealed a strong dependence of b(rw) on wavelength that could be represented by a (lambda')(-5.3+/-0.3) relationship, where lambda' is the incident wavelength, or a lambda(-4.6+/-0.3) relationship, where lambda is the Raman-scattered wavelength, when normalized to units of photons. The corresponding relationships for normalization to energy are (lambda')(-5.5+/-0.4) and lambda(-4.8+/-0.3), respectively. These relationships are found to be consistent with resonance Raman theory for an absorption wavelength of 130 nm. The absolute value of b(rw) for the 3400-cm(-1) line was found to be (2.7 +/- 0.2) x 10(-4) m(-1) for an incident wavelength of 488 nm, which is consistent with a number of earlier reports. The difference between the magnitudes of the Raman-scattering coefficients for pure water and seawater was statistically insignificant.
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Affiliation(s)
- J S Bartlett
- College of Oceanic and Atmospheric Sciences, Oregon State University, Corvallis, Oregon 97331, USA
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