1
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Zhang Y, Li J. Identification of individuals using functional near-infrared spectroscopy based on a one-dimensional convolutional neural network. JOURNAL OF BIOPHOTONICS 2024; 17:e202300453. [PMID: 38282446 DOI: 10.1002/jbio.202300453] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/01/2023] [Revised: 12/25/2023] [Accepted: 01/14/2024] [Indexed: 01/30/2024]
Abstract
In recent years, the application of functional near-infrared spectroscopy (fNIRS) and deep learning techniques has emerged as a promising method for personal identification. In this study, we innovatively utilized a deep learning framework and fNIRS data for personal identification. The framework is a one-dimensional convolutional neural network (Conv1D) trained on resting-state fNIRS signals collected from the frontal cortex of adults. In data preprocessing, we employed a sliding window-based data augmentation technique and high-pass filter, which could result in the highest identification accuracy through multiple experiments. Based on a data set consisting of 56 adult participants, the identification accuracy of 90.36% is achieved for training data with a window size of approximately 4.62 s; with the increase in training data window size, the identification accuracy can reach (97.65 ± 2.35)%. Our results suggest that deep learning is valuable for fNIRS-based personal identification, with potential applications in security, biometrics, and healthcare.
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Affiliation(s)
- Yichen Zhang
- South China Academy of Advanced Optoelectronics, South China Normal University, Guangzhou, China
| | - Jun Li
- South China Academy of Advanced Optoelectronics, South China Normal University, Guangzhou, China
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2
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Mallaroni P, Mason NL, Kloft L, Reckweg JT, van Oorsouw K, Toennes SW, Tolle HM, Amico E, Ramaekers JG. Shared functional connectome fingerprints following ritualistic ayahuasca intake. Neuroimage 2024; 285:120480. [PMID: 38061689 DOI: 10.1016/j.neuroimage.2023.120480] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2023] [Revised: 11/06/2023] [Accepted: 11/29/2023] [Indexed: 01/13/2024] Open
Abstract
The knowledge that brain functional connectomes are unique and reliable has enabled behaviourally relevant inferences at a subject level. However, whether such "fingerprints" persist under altered states of consciousness is unknown. Ayahuasca is a potent serotonergic psychedelic which produces a widespread dysregulation of functional connectivity. Used communally in religious ceremonies, its shared use may highlight relevant novel interactions between mental state and functional connectome (FC) idiosyncrasy. Using 7T fMRI, we assessed resting-state static and dynamic FCs for 21 Santo Daime members after collective ayahuasca intake in an acute, within-subject study. Here, connectome fingerprinting revealed FCs showed reduced idiosyncrasy, accompanied by a spatiotemporal reallocation of keypoint edges. Importantly, we show that interindividual differences in higher-order FC motifs are relevant to experiential phenotypes, given that they can predict perceptual drug effects. Collectively, our findings offer an example of how individualised connectivity markers can be used to trace a subject's FC across altered states of consciousness.
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Affiliation(s)
- Pablo Mallaroni
- Department of Neuropsychology and Psychopharmacology, Faculty of Psychology and Neuroscience, Maastricht University, P.O. Box 616, 6200 MD, Maastricht, the Netherlands.
| | - Natasha L Mason
- Department of Neuropsychology and Psychopharmacology, Faculty of Psychology and Neuroscience, Maastricht University, P.O. Box 616, 6200 MD, Maastricht, the Netherlands
| | - Lilian Kloft
- Department of Neuropsychology and Psychopharmacology, Faculty of Psychology and Neuroscience, Maastricht University, P.O. Box 616, 6200 MD, Maastricht, the Netherlands
| | - Johannes T Reckweg
- Department of Neuropsychology and Psychopharmacology, Faculty of Psychology and Neuroscience, Maastricht University, P.O. Box 616, 6200 MD, Maastricht, the Netherlands
| | - Kim van Oorsouw
- Department of Forensic Psychology, Faculty of Psychology and Neuroscience, Maastricht University, the Netherlands
| | - Stefan W Toennes
- Institute of Legal Medicine, University Hospital, Goethe University, Frankfurt/Main, Germany
| | | | | | - Johannes G Ramaekers
- Department of Neuropsychology and Psychopharmacology, Faculty of Psychology and Neuroscience, Maastricht University, P.O. Box 616, 6200 MD, Maastricht, the Netherlands
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3
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Kampel N, Kiefer CM, Shah NJ, Neuner I, Dammers J. Neural fingerprinting on MEG time series using MiniRocket. Front Neurosci 2023; 17:1229371. [PMID: 37799343 PMCID: PMC10547883 DOI: 10.3389/fnins.2023.1229371] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2023] [Accepted: 09/04/2023] [Indexed: 10/07/2023] Open
Abstract
Neural fingerprinting is the identification of individuals in a cohort based on neuroimaging recordings of brain activity. In magneto- and electroencephalography (M/EEG), it is common practice to use second-order statistical measures, such as correlation or connectivity matrices, when neural fingerprinting is performed. These measures or features typically require coupling between signal channels and often ignore the individual temporal dynamics. In this study, we show that, following recent advances in multivariate time series classification, such as the development of the RandOm Convolutional KErnel Transformation (ROCKET) classifier, it is possible to perform classification directly on short time segments from MEG resting-state recordings with remarkably high classification accuracies. In a cohort of 124 subjects, it was possible to assign windows of time series of 1 s in duration to the correct subject with above 99% accuracy. The achieved accuracies are vastly superior to those of previous methods while simultaneously requiring considerably shorter time segments.
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Affiliation(s)
- Nikolas Kampel
- Institute of Neuroscience and Medicine (INM-4), Forschungszentrum Jülich GmbH, Jülich, Germany
- Faculty of Medicine, RWTH Aachen University, Aachen, Germany
- Jülich Aachen Research Alliance (JARA) – CSD – Center for Simulation and Data Science, Aachen, Germany
| | - Christian M. Kiefer
- Institute of Neuroscience and Medicine (INM-4), Forschungszentrum Jülich GmbH, Jülich, Germany
- Faculty of Mathematics, Computer Science and Natural Sciences, RWTH Aachen University, Aachen, Germany
| | - N. Jon Shah
- Institute of Neuroscience and Medicine (INM-4), Forschungszentrum Jülich GmbH, Jülich, Germany
- Jülich Aachen Research Alliance (JARA) – BRAIN – Translational Medicine, Aachen, Germany
- Institute of Neuroscience and Medicine (INM-11), Jülich Aachen Research Alliance (JARA), Forschungszentrum Jülich GmbH, Jülich, Germany
- Department of Neurology, University Hospital RWTH Aachen, Aachen, Germany
| | - Irene Neuner
- Institute of Neuroscience and Medicine (INM-4), Forschungszentrum Jülich GmbH, Jülich, Germany
- Jülich Aachen Research Alliance (JARA) – CSD – Center for Simulation and Data Science, Aachen, Germany
- Jülich Aachen Research Alliance (JARA) – BRAIN – Translational Medicine, Aachen, Germany
- Department of Psychiatry, Psychotherapy and Psychosomatics, RWTH Aachen University, Aachen, Germany
| | - Jürgen Dammers
- Institute of Neuroscience and Medicine (INM-4), Forschungszentrum Jülich GmbH, Jülich, Germany
- Faculty of Medicine, RWTH Aachen University, Aachen, Germany
- Jülich Aachen Research Alliance (JARA) – CSD – Center for Simulation and Data Science, Aachen, Germany
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4
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Colenbier N, Sareen E, Del-Aguila Puntas T, Griffa A, Pellegrino G, Mantini D, Marinazzo D, Arcara G, Amico E. Task matters: Individual MEG signatures from naturalistic and neurophysiological brain states. Neuroimage 2023; 271:120021. [PMID: 36918139 DOI: 10.1016/j.neuroimage.2023.120021] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2022] [Revised: 02/21/2023] [Accepted: 03/10/2023] [Indexed: 03/14/2023] Open
Abstract
The discovery that human brain connectivity data can be used as a "fingerprint" to identify a given individual from a population, has become a burgeoning research area in the neuroscience field. Recent studies have identified the possibility to extract these brain signatures from the temporal rich dynamics of resting-state magneto encephalography (MEG) recordings. Nevertheless, it is still uncertain to what extent MEG signatures can serve as an indicator of human identifiability during task-related conduct. Here, using MEG data from naturalistic and neurophysiological tasks, we show that identification improves in tasks relative to resting-state, providing compelling evidence for a task dependent axis of MEG signatures. Notably, improvements in identifiability were more prominent in strictly controlled tasks. Lastly, the brain regions contributing most towards individual identification were also modified when engaged in task activities. We hope that this investigation advances our understanding of the driving factors behind brain identification from MEG signals.
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Affiliation(s)
| | - Ekansh Sareen
- Medical Image Processing Laboratory, Neuro-X Institute, Ecole Polytechnique Fédérale de Lausanne (EPFL), Geneva, Switzerland
| | - Tamara Del-Aguila Puntas
- Laboratorio de Psicobiologia, Departmento de Psicología Experimental, Facultad de Psicología, Universidad de Sevilla, Spain
| | - Alessandra Griffa
- Medical Image Processing Laboratory, Neuro-X Institute, Ecole Polytechnique Fédérale de Lausanne (EPFL), Geneva, Switzerland; Department of Radiology and Medical Informatics, University of Geneva, Switzerland; Leenaards Memory Center, Lausanne University Hospital and University of Lausanne, Lausanne, Switzerland
| | | | - Dante Mantini
- Movement Control and Neuroplasticity Research Group, KU Leuven, Belgium
| | - Daniele Marinazzo
- Department of Data Analysis, Faculty of Psychology and Educational Sciences, Ghent University, Ghent, Belgium
| | | | - Enrico Amico
- Medical Image Processing Laboratory, Neuro-X Institute, Ecole Polytechnique Fédérale de Lausanne (EPFL), Geneva, Switzerland; Department of Radiology and Medical Informatics, University of Geneva, Switzerland.
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5
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Novi SL, Carvalho AC, Forti RM, Cendes F, Yasuda CL, Mesquita RC. Revealing the spatiotemporal requirements for accurate subject identification with resting-state functional connectivity: a simultaneous fNIRS-fMRI study. NEUROPHOTONICS 2023; 10:013510. [PMID: 36756003 PMCID: PMC9896013 DOI: 10.1117/1.nph.10.1.013510] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/27/2022] [Accepted: 01/10/2023] [Indexed: 06/18/2023]
Abstract
SIGNIFICANCE Brain fingerprinting refers to identifying participants based on their functional patterns. Despite its success with functional magnetic resonance imaging (fMRI), brain fingerprinting with functional near-infrared spectroscopy (fNIRS) still lacks adequate validation. AIM We investigated how fNIRS-specific acquisition features (limited spatial information and nonneural contributions) influence resting-state functional connectivity (rsFC) patterns at the intra-subject level and, therefore, brain fingerprinting. APPROACH We performed multiple simultaneous fNIRS and fMRI measurements in 29 healthy participants at rest. Data were preprocessed following the best practices, including the removal of motion artifacts and global physiology. The rsFC maps were extracted with the Pearson correlation coefficient. Brain fingerprinting was tested with pairwise metrics and a simple linear classifier. RESULTS Our results show that average classification accuracy with fNIRS ranges from 75% to 98%, depending on the number of runs and brain regions used for classification. Under the right conditions, brain fingerprinting with fNIRS is close to the 99.9% accuracy found with fMRI. Overall, the classification accuracy is more impacted by the number of runs and the spatial coverage than the choice of the classification algorithm. CONCLUSIONS This work provides evidence that brain fingerprinting with fNIRS is robust and reliable for extracting unique individual features at the intra-subject level once relevant spatiotemporal constraints are correctly employed.
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Affiliation(s)
- Sergio L. Novi
- University of Campinas, “Gleb Wataghin” Institute of Physics, Campinas, Brazil
- Western University, Department of Physiology and Pharmacology, London, Ontario, Canada
| | - Alex C. Carvalho
- University of Campinas, “Gleb Wataghin” Institute of Physics, Campinas, Brazil
- University of Campinas, Laboratory of Neuroimaging, Campinas, Brazil
| | - R. M. Forti
- University of Campinas, “Gleb Wataghin” Institute of Physics, Campinas, Brazil
- The Children’s Hospital of Philadelphia, Division of Neurology, Philadelphia, Pennsylvania, United States
| | - Fernado Cendes
- Brazilian Institute of Neuroscience and Neurotechnology, Campinas, Brazil
- University of Campinas, School of Medical Sciences, Department of Neurology, Campinas, Brazil
| | - Clarissa L. Yasuda
- University of Campinas, Laboratory of Neuroimaging, Campinas, Brazil
- Brazilian Institute of Neuroscience and Neurotechnology, Campinas, Brazil
- University of Campinas, School of Medical Sciences, Department of Neurology, Campinas, Brazil
| | - Rickson C. Mesquita
- University of Campinas, “Gleb Wataghin” Institute of Physics, Campinas, Brazil
- Brazilian Institute of Neuroscience and Neurotechnology, Campinas, Brazil
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6
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Jäncke L, Valizadeh SA. Identification of individual subjects based on neuroanatomical measures obtained seven years earlier. Eur J Neurosci 2022; 56:4642-4652. [PMID: 35831945 PMCID: PMC9543309 DOI: 10.1111/ejn.15770] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2022] [Revised: 06/07/2022] [Accepted: 07/05/2022] [Indexed: 11/30/2022]
Abstract
We analyzed a dataset comprising 118 subjects who were scanned three times (at baseline, 1-year follow-up, and 7-year follow-up) using structural MRI over the course of seven years. We aimed to examine whether it is possible to identify individual subjects based on a restricted number of neuroanatomical features measured 7 years previously. We used FreeSurfer to compute 15 standard brain measures (total intracranial volume (ICV), total cortical thickness (CT), total cortical surface area (CA), cortical gray matter (CoGM), cerebral white matter (CeWM), cerebellar cortex (CBGM), cerebellar white matter (CBWM), subcortical volumes [thalamus, putamen, pallidum, caudatus, hippocampus, amygdala, accumbens], and brain stem volume). We used linear discriminant analysis (LDA), random forest machine learning (RF), and a newly developed rule-based identification approach (RBIA) for the identification process. Using RBIA, different sets of neuroanatomical features (ranging from 2 to 14) obtained at baseline were combined by if-then rules and compared to the same set of neuroanatomical features derived from the 7-year follow-up measurement. We achieved excellent identification results with LDA, while the identification results for RF were very good but not perfect. The RBIA produced the best results, achieving perfect participant identification for some 4-feature sets. The identification results improved substantially when using larger feature sets, with 14 neuroanatomical features providing perfect identification. Thus, this study shows again that the human brain is highly individual in terms of neuroanatomical features. These results are discussed in the context of the current literature on brain plasticity and the scientific attempts to develop brain-fingerprinting techniques.
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Affiliation(s)
- L Jäncke
- Division Neuropsychology, Department of Psychology, University of Zurich, Zurich, Switzerland.,University Research Priority Program "Dynamics of Healthy Aging," University Zurich
| | - S A Valizadeh
- Division Neuropsychology, Department of Psychology, University of Zurich, Zurich, Switzerland
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7
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García HA, Vera DA, Waks Serra MV, Baez GR, Iriarte DI, Pomarico JA. Theoretical investigation of photon partial pathlengths in multilayered turbid media. BIOMEDICAL OPTICS EXPRESS 2022; 13:2516-2529. [PMID: 35519258 PMCID: PMC9045903 DOI: 10.1364/boe.449514] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/09/2021] [Revised: 02/01/2022] [Accepted: 02/03/2022] [Indexed: 05/20/2023]
Abstract
Functional near infrared spectroscopy (fNIRS) is a valuable tool for assessing oxy- and deoxyhemoglobin concentration changes (Δ[HbO] and Δ[HbR], respectively) in the human brain. To this end, photon pathlengths in tissue are needed to convert from light attenuation to Δ[HbO] and Δ[HbR]. Current techniques describe the human head as a homogeneous medium, in which case these pathlengths are easily computed. However, the head is more appropriately described as a layered medium; hence, the partial pathlengths in each layer are required. The current way to do this is by means of Monte Carlo (MC) simulations, which are time-consuming and computationally expensive. In this work, we introduce an approach to theoretically calculate these partial pathlengths, which are computed several times faster than MC simulations. Comparison of our approach with MC simulations show very good agreement. Results also suggest that these analytical expressions give much more specific information about light absorption in each layer than in the homogeneous case.
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8
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Neurobehavioral mechanisms underlying the effects of physical exercise break on episodic memory during prolonged sitting. Complement Ther Clin Pract 2022; 48:101553. [DOI: 10.1016/j.ctcp.2022.101553] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2022] [Revised: 02/08/2022] [Accepted: 02/12/2022] [Indexed: 12/20/2022]
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9
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Nogueira MG, Silvestrin M, Barreto CSF, Sato JR, Mesquita RC, Biazoli C, Baptista AF. Differences in brain activity between fast and slow responses on psychomotor vigilance task: an fNIRS study. Brain Imaging Behav 2022; 16:1563-1574. [PMID: 35091973 DOI: 10.1007/s11682-021-00611-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/29/2021] [Indexed: 11/29/2022]
Abstract
Attention is a basic human function underlying every other cognitive process. It is demonstrated in the functional Magnetic Resonance Imaging literature that frontoparietal networks are involved with attentive performance while default mode networks are involved with inattentive performance. Yet, it is still not clear whether similar results would be found with functional Near-Infrared Spectroscopy. The goal of our study was to investigate differences in hemodynamic activity measured by functional Near-Infrared Spectroscopy between fast and slow responses on a simple sustained attention task both before and after stimulus onset. Thirty healthy adults took part in the study. Our results have shown differences between fast and slow responses only on channels over medial frontal cortex and inferior parietal cortex (p < 0,05). These differences were observed both before and after stimulus presentation. It is discussed that functional Near-Infrared Spectroscopy is a good tool to investigate the frontoparietal network and its relationship with performance in attention tasks; it could be used to further investigate other approaches on attention, such as the dual network model of cognitive control and brain states views based on complex systems analysis; and finally, it could be used to investigate attention in naturalistic settings.
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Affiliation(s)
- Mateus G Nogueira
- Center for Mathematics, Computation and Cognition, UFABC - Universidade Federal do ABC -SP, Avenida dos Estados, 5001, Bloco B, Sala 803, São Bernardo do Campo, Brazil
| | - Mateus Silvestrin
- Center for Mathematics, Computation and Cognition, UFABC - Universidade Federal do ABC -SP, Avenida dos Estados, 5001, Bloco B, Sala 803, São Bernardo do Campo, Brazil
| | - Cândida S F Barreto
- Center for Mathematics, Computation and Cognition, UFABC - Universidade Federal do ABC -SP, Avenida dos Estados, 5001, Bloco B, Sala 803, São Bernardo do Campo, Brazil
| | - João Ricardo Sato
- Center for Mathematics, Computation and Cognition, UFABC - Universidade Federal do ABC -SP, Avenida dos Estados, 5001, Bloco B, Sala 803, São Bernardo do Campo, Brazil
| | | | - Claudinei Biazoli
- Center for Mathematics, Computation and Cognition, UFABC - Universidade Federal do ABC -SP, Avenida dos Estados, 5001, Bloco B, Sala 803, São Bernardo do Campo, Brazil
| | - Abrahão F Baptista
- Center for Mathematics, Computation and Cognition, UFABC - Universidade Federal do ABC -SP, Avenida dos Estados, 5001, Bloco B, Sala 803, São Bernardo do Campo, Brazil.
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10
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Brief segments of neurophysiological activity enable individual differentiation. Nat Commun 2021; 12:5713. [PMID: 34588439 PMCID: PMC8481307 DOI: 10.1038/s41467-021-25895-8] [Citation(s) in RCA: 24] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2020] [Accepted: 09/07/2021] [Indexed: 11/08/2022] Open
Abstract
Large, openly available datasets and current analytic tools promise the emergence of population neuroscience. The considerable diversity in personality traits and behaviour between individuals is reflected in the statistical variability of neural data collected in such repositories. Recent studies with functional magnetic resonance imaging (fMRI) have concluded that patterns of resting-state functional connectivity can both successfully distinguish individual participants within a cohort and predict some individual traits, yielding the notion of an individual's neural fingerprint. Here, we aim to clarify the neurophysiological foundations of individual differentiation from features of the rich and complex dynamics of resting-state brain activity using magnetoencephalography (MEG) in 158 participants. We show that akin to fMRI approaches, neurophysiological functional connectomes enable the differentiation of individuals, with rates similar to those seen with fMRI. We also show that individual differentiation is equally successful from simpler measures of the spatial distribution of neurophysiological spectral signal power. Our data further indicate that differentiation can be achieved from brain recordings as short as 30 seconds, and that it is robust over time: the neural fingerprint is present in recordings performed weeks after their baseline reference data was collected. This work, thus, extends the notion of a neural or brain fingerprint to fast and large-scale resting-state electrophysiological dynamics.
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11
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Zang J, Huang Y, Kong L, Lei B, Ke P, Li H, Zhou J, Xiong D, Li G, Chen J, Li X, Xiang Z, Ning Y, Wu F, Wu K. Effects of Brain Atlases and Machine Learning Methods on the Discrimination of Schizophrenia Patients: A Multimodal MRI Study. Front Neurosci 2021; 15:697168. [PMID: 34385901 PMCID: PMC8353157 DOI: 10.3389/fnins.2021.697168] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2021] [Accepted: 07/07/2021] [Indexed: 11/24/2022] Open
Abstract
Recently, machine learning techniques have been widely applied in discriminative studies of schizophrenia (SZ) patients with multimodal magnetic resonance imaging (MRI); however, the effects of brain atlases and machine learning methods remain largely unknown. In this study, we collected MRI data for 61 first-episode SZ patients (FESZ), 79 chronic SZ patients (CSZ) and 205 normal controls (NC) and calculated 4 MRI measurements, including regional gray matter volume (GMV), regional homogeneity (ReHo), amplitude of low-frequency fluctuation and degree centrality. We systematically analyzed the performance of two classifications (SZ vs NC; FESZ vs CSZ) based on the combinations of three brain atlases, five classifiers, two cross validation methods and 3 dimensionality reduction algorithms. Our results showed that the groupwise whole-brain atlas with 268 ROIs outperformed the other two brain atlases. In addition, the leave-one-out cross validation was the best cross validation method to select the best hyperparameter set, but the classification performances by different classifiers and dimensionality reduction algorithms were quite similar. Importantly, the contributions of input features to both classifications were higher with the GMV and ReHo features of brain regions in the prefrontal and temporal gyri. Furthermore, an ensemble learning method was performed to establish an integrated model, in which classification performance was improved. Taken together, these findings indicated the effects of these factors in constructing effective classifiers for psychiatric diseases and showed that the integrated model has the potential to improve the clinical diagnosis and treatment evaluation of SZ.
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Affiliation(s)
- Jinyu Zang
- Department of Biomedical Engineering, School of Material Science and Engineering, South China University of Technology, Guangzhou, China.,Guangdong Engineering Technology Research Center for Translational Medicine of Mental Disorders, Guangzhou, China.,National Engineering Research Center for Tissue Restoration and Reconstruction, South China University of Technology, Guangzhou, China
| | - Yuanyuan Huang
- Guangdong Engineering Technology Research Center for Translational Medicine of Mental Disorders, Guangzhou, China.,The Affiliated Brain Hospital of Guangzhou Medical University, Guangzhou Huiai Hospital, Guangzhou, China
| | - Lingyin Kong
- Department of Biomedical Engineering, School of Material Science and Engineering, South China University of Technology, Guangzhou, China.,Guangdong Engineering Technology Research Center for Translational Medicine of Mental Disorders, Guangzhou, China.,National Engineering Research Center for Tissue Restoration and Reconstruction, South China University of Technology, Guangzhou, China
| | - Bingye Lei
- Department of Biomedical Engineering, School of Material Science and Engineering, South China University of Technology, Guangzhou, China.,Guangdong Engineering Technology Research Center for Translational Medicine of Mental Disorders, Guangzhou, China.,National Engineering Research Center for Tissue Restoration and Reconstruction, South China University of Technology, Guangzhou, China
| | - Pengfei Ke
- Department of Biomedical Engineering, School of Material Science and Engineering, South China University of Technology, Guangzhou, China.,Guangdong Engineering Technology Research Center for Translational Medicine of Mental Disorders, Guangzhou, China.,National Engineering Research Center for Tissue Restoration and Reconstruction, South China University of Technology, Guangzhou, China
| | - Hehua Li
- The Affiliated Brain Hospital of Guangzhou Medical University, Guangzhou Huiai Hospital, Guangzhou, China
| | - Jing Zhou
- Department of Biomedical Engineering, School of Material Science and Engineering, South China University of Technology, Guangzhou, China.,Guangdong Engineering Technology Research Center for Translational Medicine of Mental Disorders, Guangzhou, China.,National Engineering Research Center for Tissue Restoration and Reconstruction, South China University of Technology, Guangzhou, China
| | - Dongsheng Xiong
- Department of Biomedical Engineering, School of Material Science and Engineering, South China University of Technology, Guangzhou, China.,Guangdong Engineering Technology Research Center for Translational Medicine of Mental Disorders, Guangzhou, China.,National Engineering Research Center for Tissue Restoration and Reconstruction, South China University of Technology, Guangzhou, China
| | - Guixiang Li
- Guangdong Engineering Technology Research Center for Diagnosis and Rehabilitation of Dementia, Guangzhou, China.,National Engineering Research Center for Healthcare Devices, Guangzhou, China
| | - Jun Chen
- Guangdong Engineering Technology Research Center for Diagnosis and Rehabilitation of Dementia, Guangzhou, China.,National Engineering Research Center for Healthcare Devices, Guangzhou, China
| | - Xiaobo Li
- Department of Biomedical Engineering, New Jersey Institute of Technology, Newark, NJ, United States
| | - Zhiming Xiang
- Guangdong Engineering Technology Research Center for Diagnosis and Rehabilitation of Dementia, Guangzhou, China.,Department of Radiology, Panyu Central Hospital of Guangzhou, Guangzhou, China
| | - Yuping Ning
- Guangdong Engineering Technology Research Center for Translational Medicine of Mental Disorders, Guangzhou, China.,The Affiliated Brain Hospital of Guangzhou Medical University, Guangzhou Huiai Hospital, Guangzhou, China
| | - Fengchun Wu
- The Affiliated Brain Hospital of Guangzhou Medical University, Guangzhou Huiai Hospital, Guangzhou, China
| | - Kai Wu
- Department of Biomedical Engineering, School of Material Science and Engineering, South China University of Technology, Guangzhou, China.,Guangdong Engineering Technology Research Center for Translational Medicine of Mental Disorders, Guangzhou, China.,National Engineering Research Center for Tissue Restoration and Reconstruction, South China University of Technology, Guangzhou, China.,The Affiliated Brain Hospital of Guangzhou Medical University, Guangzhou Huiai Hospital, Guangzhou, China.,Guangdong Engineering Technology Research Center for Diagnosis and Rehabilitation of Dementia, Guangzhou, China.,National Engineering Research Center for Healthcare Devices, Guangzhou, China.,Key Laboratory of Biomedical Engineering of Guangdong Province, South China University of Technology, Guangzhou, China.,Department of Nuclear Medicine and Radiology, Institute of Development, Aging and Cancer, Tohoku University, Sendai, Japan
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12
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Sareen E, Zahar S, Ville DVD, Gupta A, Griffa A, Amico E. Exploring MEG brain fingerprints: Evaluation, pitfalls, and interpretations. Neuroimage 2021; 240:118331. [PMID: 34237444 DOI: 10.1016/j.neuroimage.2021.118331] [Citation(s) in RCA: 23] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2021] [Revised: 06/22/2021] [Accepted: 07/01/2021] [Indexed: 12/16/2022] Open
Abstract
Individual characterization of subjects based on their functional connectome (FC), termed "FC fingerprinting", has become a highly sought-after goal in contemporary neuroscience research. Recent functional magnetic resonance imaging (fMRI) studies have demonstrated unique characterization and accurate identification of individuals as an accomplished task. However, FC fingerprinting in magnetoencephalography (MEG) data is still widely unexplored. Here, we study resting-state MEG data from the Human Connectome Project to assess the MEG FC fingerprinting and its relationship with several factors including amplitude- and phase-coupling functional connectivity measures, spatial leakage correction, frequency bands, and behavioral significance. To this end, we first employ two identification scoring methods, differential identifiability and success rate, to provide quantitative fingerprint scores for each FC measurement. Secondly, we explore the edgewise and nodal MEG fingerprinting patterns across the different frequency bands (delta, theta, alpha, beta, and gamma). Finally, we investigate the cross-modality fingerprinting patterns obtained from MEG and fMRI recordings from the same subjects. We assess the behavioral significance of FC across connectivity measures and imaging modalities using partial least square correlation analyses. Our results suggest that fingerprinting performance is heavily dependent on the functional connectivity measure, frequency band, identification scoring method, and spatial leakage correction. We report higher MEG fingerprinting performances in phase-coupling methods, central frequency bands (alpha and beta), and in the visual, frontoparietal, dorsal-attention, and default-mode networks. Furthermore, cross-modality comparisons reveal a certain degree of spatial concordance in fingerprinting patterns between the MEG and fMRI data, especially in the visual system. Finally, the multivariate correlation analyses show that MEG connectomes have strong behavioral significance, which however depends on the considered connectivity measure and temporal scale. This comprehensive, albeit preliminary investigation of MEG connectome test-retest identifiability offers a first characterization of MEG fingerprinting in relation to different methodological and electrophysiological factors and contributes to the understanding of fingerprinting cross-modal relationships. We hope that this first investigation will contribute to setting the grounds for MEG connectome identification.
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Affiliation(s)
- Ekansh Sareen
- Signal Processing and Biomedical Imaging, Dept. of Electronics and Communication Engineering, IIIT-Delhi, New Delhi, India
| | - Sélima Zahar
- Institute of Bioengineering, Center for Neuroprosthetics, École Polytechnique Fédérale De Lausanne (EPFL), Geneva, Switzerland
| | - Dimitri Van De Ville
- Institute of Bioengineering, Center for Neuroprosthetics, École Polytechnique Fédérale De Lausanne (EPFL), Geneva, Switzerland; Department of Radiology and Medical Informatics, University of Geneva (UNIGE), Geneva, Switzerland
| | - Anubha Gupta
- Signal Processing and Biomedical Imaging, Dept. of Electronics and Communication Engineering, IIIT-Delhi, New Delhi, India
| | - Alessandra Griffa
- Institute of Bioengineering, Center for Neuroprosthetics, École Polytechnique Fédérale De Lausanne (EPFL), Geneva, Switzerland; Department of Clinical Neurosciences, Division of Neurology, Geneva University Hospitals and Faculty of Medicine, University of Geneva, Geneva, Switzerland
| | - Enrico Amico
- Institute of Bioengineering, Center for Neuroprosthetics, École Polytechnique Fédérale De Lausanne (EPFL), Geneva, Switzerland; Department of Radiology and Medical Informatics, University of Geneva (UNIGE), Geneva, Switzerland.
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13
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Chen Y, Tang J, Chen Y, Farrand J, Craft MA, Carlson BW, Yuan H. Amplitude of fNIRS Resting-State Global Signal Is Related to EEG Vigilance Measures: A Simultaneous fNIRS and EEG Study. Front Neurosci 2020; 14:560878. [PMID: 33343275 PMCID: PMC7744746 DOI: 10.3389/fnins.2020.560878] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2020] [Accepted: 11/11/2020] [Indexed: 12/21/2022] Open
Abstract
Recently, functional near-infrared spectroscopy (fNIRS) has been utilized to image the hemodynamic activities and connectivity in the human brain. With the advantage of economic efficiency, portability, and fewer physical constraints, fNIRS enables studying of the human brain at versatile environment and various body positions, including at bed side and during exercise, which complements the use of functional magnetic resonance imaging (fMRI). However, like fMRI, fNIRS imaging can be influenced by the presence of a strong global component. Yet, the nature of the global signal in fNIRS has not been established. In this study, we investigated the relationship between fNIRS global signal and electroencephalogram (EEG) vigilance using simultaneous recordings in resting healthy subjects in high-density and whole-head montage. In Experiment 1, data were acquired at supine, sitting, and standing positions. Results found that the factor of body positions significantly affected the amplitude of the resting-state fNIRS global signal, prominently in the frequency range of 0.05-0.1 Hz but not in the very low frequency range of less than 0.05 Hz. As a control, the task-induced fNIRS or EEG responses to auditory stimuli did not differ across body positions. However, EEG vigilance plays a modulatory role in the fNIRS signals in the frequency range of less than 0.05 Hz: resting-state sessions of low EEG vigilance measures are associated with high amplitudes of fNIRS global signals. Moreover, in Experiment 2, we further examined the epoch-to-epoch fluctuations in concurrent fNIRS and EEG data acquired from a separate group of subjects and found a negative temporal correlation between EEG vigilance measures and fNIRS global signal amplitudes. Our study for the first time revealed that vigilance as a neurophysiological factor modulates the resting-state dynamics of fNIRS, which have important implications for understanding and processing the noises in fNIRS signals.
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Affiliation(s)
- Yuxuan Chen
- School of Electrical and Computer Engineering, University of Oklahoma, Norman, OK, United States
| | - Julia Tang
- Stephenson School of Biomedical Engineering, University of Oklahoma, Norman, OK, United States
| | - Yafen Chen
- Stephenson School of Biomedical Engineering, University of Oklahoma, Norman, OK, United States
| | - Jesse Farrand
- Stephenson School of Biomedical Engineering, University of Oklahoma, Norman, OK, United States
| | - Melissa A. Craft
- Fran and Earl Ziegler College of Nursing, University of Oklahoma Health Sciences Center, Oklahoma City, OK, United States
| | - Barbara W. Carlson
- Fran and Earl Ziegler College of Nursing, University of Oklahoma Health Sciences Center, Oklahoma City, OK, United States
| | - Han Yuan
- Stephenson School of Biomedical Engineering, University of Oklahoma, Norman, OK, United States
- Institute for Biomedical Engineering, Science, and Technology, University of Oklahoma, Norman, OK, United States
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14
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Sanchez-Alonso S, Aslin RN. Predictive modeling of neurobehavioral state and trait variation across development. Dev Cogn Neurosci 2020; 45:100855. [PMID: 32942148 PMCID: PMC7501421 DOI: 10.1016/j.dcn.2020.100855] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2020] [Revised: 08/26/2020] [Accepted: 09/04/2020] [Indexed: 11/24/2022] Open
Abstract
A key goal of human neurodevelopmental research is to map neural and behavioral trajectories across both health and disease. A growing number of developmental consortia have begun to address this gap by providing open access to cross-sectional and longitudinal 'big data' repositories. However, it remains challenging to develop models that enable prediction of both within-subject and between-subject neurodevelopmental variation. Here, we present a conceptual and analytical perspective of two essential ingredients for mapping neurodevelopmental trajectories: state and trait components of variance. We focus on mapping variation across a range of neural and behavioral measurements and consider concurrent alterations of state and trait variation across development. We present a quantitative framework for combining both state- and trait-specific sources of neurobehavioral variation across development. Specifically, we argue that non-linear mixed growth models that leverage state and trait components of variance and consider environmental factors are necessary to comprehensively map brain-behavior relationships. We discuss this framework in the context of mapping language neurodevelopmental changes in early childhood, with an emphasis on measures of functional connectivity and their reliability for establishing robust neurobehavioral relationships. The ultimate goal is to statistically unravel developmental trajectories of neurobehavioral relationships that involve a combination of individual differences and age-related changes.
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