1
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Sims RR, Bendifallah I, Grimm C, Lafirdeen ASM, Domínguez S, Chan CY, Lu X, Forget BC, St-Pierre F, Papagiakoumou E, Emiliani V. Scanless two-photon voltage imaging. Nat Commun 2024; 15:5095. [PMID: 38876987 PMCID: PMC11178882 DOI: 10.1038/s41467-024-49192-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/24/2022] [Accepted: 05/28/2024] [Indexed: 06/16/2024] Open
Abstract
Two-photon voltage imaging has long been heralded as a transformative approach capable of answering many long-standing questions in modern neuroscience. However, exploiting its full potential requires the development of novel imaging approaches well suited to the photophysical properties of genetically encoded voltage indicators. We demonstrate that parallel excitation approaches developed for scanless two-photon photostimulation enable high-SNR two-photon voltage imaging. We use whole-cell patch-clamp electrophysiology to perform a thorough characterization of scanless two-photon voltage imaging using three parallel illumination approaches and lasers with different repetition rates and wavelengths. We demonstrate voltage recordings of high-frequency spike trains and sub-threshold depolarizations from neurons expressing the soma-targeted genetically encoded voltage indicator JEDI-2P-Kv. Using a low repetition-rate laser, we perform multi-cell recordings from up to fifteen targets simultaneously. We co-express JEDI-2P-Kv and the channelrhodopsin ChroME-ST and capitalize on their overlapping two-photon absorption spectra to simultaneously evoke and image action potentials using a single laser source. We also demonstrate in vivo scanless two-photon imaging of multiple cells simultaneously up to 250 µm deep in the barrel cortex of head-fixed, anaesthetised mice.
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Affiliation(s)
- Ruth R Sims
- Institut de la Vision, Sorbonne Université, INSERM, CNRS, Paris, France
| | - Imane Bendifallah
- Institut de la Vision, Sorbonne Université, INSERM, CNRS, Paris, France
| | - Christiane Grimm
- Institut de la Vision, Sorbonne Université, INSERM, CNRS, Paris, France
| | | | - Soledad Domínguez
- Institut de la Vision, Sorbonne Université, INSERM, CNRS, Paris, France
| | - Chung Yuen Chan
- Institut de la Vision, Sorbonne Université, INSERM, CNRS, Paris, France
| | - Xiaoyu Lu
- Systems, Synthetic, and Physical Biology Program, Rice University, Houston, TX, USA
| | - Benoît C Forget
- Institut de la Vision, Sorbonne Université, INSERM, CNRS, Paris, France
| | - François St-Pierre
- Systems, Synthetic, and Physical Biology Program, Rice University, Houston, TX, USA
- Department of Neuroscience, Baylor College of Medicine, Houston, TX, USA
- Department of Biochemistry and Molecular Pharmacology, Baylor College of Medicine, Houston, TX, USA
- Department of Electrical and Computer Engineering, Rice University, Houston, TX, USA
| | | | - Valentina Emiliani
- Institut de la Vision, Sorbonne Université, INSERM, CNRS, Paris, France.
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2
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Russell LE, Fişek M, Yang Z, Tan LP, Packer AM, Dalgleish HWP, Chettih SN, Harvey CD, Häusser M. The influence of cortical activity on perception depends on behavioral state and sensory context. Nat Commun 2024; 15:2456. [PMID: 38503769 PMCID: PMC10951313 DOI: 10.1038/s41467-024-46484-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2023] [Accepted: 02/28/2024] [Indexed: 03/21/2024] Open
Abstract
The mechanistic link between neural circuit activity and behavior remains unclear. While manipulating cortical activity can bias certain behaviors and elicit artificial percepts, some tasks can still be solved when cortex is silenced or removed. Here, mice were trained to perform a visual detection task during which we selectively targeted groups of visually responsive and co-tuned neurons in L2/3 of primary visual cortex (V1) for two-photon photostimulation. The influence of photostimulation was conditional on two key factors: the behavioral state of the animal and the contrast of the visual stimulus. The detection of low-contrast stimuli was enhanced by photostimulation, while the detection of high-contrast stimuli was suppressed, but crucially, only when mice were highly engaged in the task. When mice were less engaged, our manipulations of cortical activity had no effect on behavior. The behavioral changes were linked to specific changes in neuronal activity. The responses of non-photostimulated neurons in the local network were also conditional on two factors: their functional similarity to the photostimulated neurons and the contrast of the visual stimulus. Functionally similar neurons were increasingly suppressed by photostimulation with increasing visual stimulus contrast, correlating with the change in behavior. Our results show that the influence of cortical activity on perception is not fixed, but dynamically and contextually modulated by behavioral state, ongoing activity and the routing of information through specific circuits.
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Affiliation(s)
- Lloyd E Russell
- Wolfson Institute for Biomedical Research, University College London, London, UK
| | - Mehmet Fişek
- Wolfson Institute for Biomedical Research, University College London, London, UK
| | - Zidan Yang
- Wolfson Institute for Biomedical Research, University College London, London, UK
| | - Lynn Pei Tan
- Wolfson Institute for Biomedical Research, University College London, London, UK
| | - Adam M Packer
- Wolfson Institute for Biomedical Research, University College London, London, UK
| | - Henry W P Dalgleish
- Wolfson Institute for Biomedical Research, University College London, London, UK
| | | | | | - Michael Häusser
- Wolfson Institute for Biomedical Research, University College London, London, UK.
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3
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Gohma A, Adachi N, Yonemaru Y, Horiba D, Higuchi K, Nishiwaki D, Yokoi E, Ue Y, Miyawaki A, Monai H. Spatial frequency-based correction of the spherical aberration in living brain imaging. Microscopy (Oxf) 2024; 73:37-46. [PMID: 37315186 PMCID: PMC10849036 DOI: 10.1093/jmicro/dfad035] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2023] [Revised: 05/30/2023] [Accepted: 06/12/2023] [Indexed: 06/16/2023] Open
Abstract
Optical errors, including spherical aberrations, hinder high-resolution imaging of biological samples due to biochemical components and physical properties. We developed the Deep-C microscope system to achieve aberration-free images, employing a motorized correction collar and contrast-based calculations. However, current contrast-maximization techniques, such as the Brenner gradient method, inadequately assess specific frequency bands. The Peak-C method addresses this issue, but its arbitrary neighbor selection and susceptibility to the noise limit its effectiveness. In this paper, we emphasize the importance of a broad spatial frequency range for accurate spherical aberration correction and propose Peak-F. This spatial frequency-based system utilizes a fast Fourier transform as a bandpass filter. This approach overcomes Peak-C's limitations and comprehensively covers the low-frequency domain of image spatial frequencies.
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Affiliation(s)
- Aoi Gohma
- Department of Biological Sciences, Graduate School of Humanities and Sciences, Ochanomizu University, Ohtsuka, Bunkyo-ku, Tokyo 112-8610, Japan
- RIKEN Center for Brain Science-Evident Open Collaboration Center, Center for Brain Science (CBS), RIKEN, 2-1, Hirosawa, Wako-shi, Saitama 351-0106, Japan
| | - Naoya Adachi
- RIKEN Center for Brain Science-Evident Open Collaboration Center, Center for Brain Science (CBS), RIKEN, 2-1, Hirosawa, Wako-shi, Saitama 351-0106, Japan
| | - Yasuo Yonemaru
- RIKEN Center for Brain Science-Evident Open Collaboration Center, Center for Brain Science (CBS), RIKEN, 2-1, Hirosawa, Wako-shi, Saitama 351-0106, Japan
| | - Daiki Horiba
- RIKEN Center for Brain Science-Evident Open Collaboration Center, Center for Brain Science (CBS), RIKEN, 2-1, Hirosawa, Wako-shi, Saitama 351-0106, Japan
| | - Kaori Higuchi
- RIKEN Center for Brain Science-Evident Open Collaboration Center, Center for Brain Science (CBS), RIKEN, 2-1, Hirosawa, Wako-shi, Saitama 351-0106, Japan
| | - Daisuke Nishiwaki
- RIKEN Center for Brain Science-Evident Open Collaboration Center, Center for Brain Science (CBS), RIKEN, 2-1, Hirosawa, Wako-shi, Saitama 351-0106, Japan
| | - Eiji Yokoi
- RIKEN Center for Brain Science-Evident Open Collaboration Center, Center for Brain Science (CBS), RIKEN, 2-1, Hirosawa, Wako-shi, Saitama 351-0106, Japan
| | - Yoshihiro Ue
- RIKEN Center for Brain Science-Evident Open Collaboration Center, Center for Brain Science (CBS), RIKEN, 2-1, Hirosawa, Wako-shi, Saitama 351-0106, Japan
| | - Atsushi Miyawaki
- RIKEN Center for Brain Science-Evident Open Collaboration Center, Center for Brain Science (CBS), RIKEN, 2-1, Hirosawa, Wako-shi, Saitama 351-0106, Japan
| | - Hiromu Monai
- Department of Biological Sciences, Graduate School of Humanities and Sciences, Ochanomizu University, Ohtsuka, Bunkyo-ku, Tokyo 112-8610, Japan
- RIKEN Center for Brain Science-Evident Open Collaboration Center, Center for Brain Science (CBS), RIKEN, 2-1, Hirosawa, Wako-shi, Saitama 351-0106, Japan
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4
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Le Bourdellès G, Mercier L, Roos J, Bancelin S, Nägerl UV. Impact of a tilted coverslip on two-photon and STED microscopy. BIOMEDICAL OPTICS EXPRESS 2024; 15:743-752. [PMID: 38404309 PMCID: PMC10890867 DOI: 10.1364/boe.510512] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/26/2023] [Revised: 12/14/2023] [Accepted: 12/15/2023] [Indexed: 02/27/2024]
Abstract
The advent of super-resolution microscopy has opened up new avenues to unveil brain structures with unprecedented spatial resolution in the living state. Yet, its application to live animals remains a genuine challenge. Getting optical access to the brain in vivo requires the use of a 'cranial window', whose mounting greatly influences image quality. Indeed, the coverslip used for the cranial window should lie as orthogonal as possible to the optical axis of the objective, or else significant optical aberrations occur. In this work, we assess the effect of the tilt angle of the coverslip on STED and two-photon microscopy, in particular, image brightness and spatial resolution. We then propose an approach to measure and reduce the tilt using a simple device added to the microscope, which can ensure orthogonality with a precision of 0.07°.
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Affiliation(s)
| | - Luc Mercier
- Univ. Bordeaux, CNRS, IINS, UMR5297, F-33000 Bordeaux, France
| | - Johannes Roos
- Univ. Bordeaux, CNRS, IINS, UMR5297, F-33000 Bordeaux, France
| | - Stéphane Bancelin
- Univ. Bordeaux, CNRS, IINS, UMR5297, F-33000 Bordeaux, France
- IOGS, CNRS, LP2N, UMR5298, F-33400 Talence, France
- Univ. Bordeaux, CNRS, LP2N, UMR5298, F-33400 Talence, France
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5
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Velasco MGM, Zhang M, Antonello J, Yuan P, Allgeyer ES, May D, M’Saad O, Kidd P, Barentine AES, Greco V, Grutzendler J, Booth MJ, Bewersdorf J. 3D super-resolution deep-tissue imaging in living mice. OPTICA 2021; 8:442-450. [PMID: 34239948 PMCID: PMC8243577 DOI: 10.1364/optica.416841] [Citation(s) in RCA: 33] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/07/2020] [Revised: 02/23/2021] [Accepted: 02/23/2021] [Indexed: 05/08/2023]
Abstract
Stimulated emission depletion (STED) microscopy enables the three-dimensional (3D) visualization of dynamic nanoscale structures in living cells, offering unique insights into their organization. However, 3D-STED imaging deep inside biological tissue is obstructed by optical aberrations and light scattering. We present a STED system that overcomes these challenges. Through the combination of two-photon excitation, adaptive optics, red-emitting organic dyes, and a long-working-distance water-immersion objective lens, our system achieves aberration-corrected 3D super-resolution imaging, which we demonstrate 164 µm deep in fixed mouse brain tissue and 76 µm deep in the brain of a living mouse.
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Affiliation(s)
- Mary Grace M. Velasco
- Department of Biomedical Engineering, Yale School of Engineering & Applied Science, New Haven, Connecticut 06520, USA
- Department of Cell Biology, Yale School of Medicine, New Haven, Connecticut 06520, USA
| | - Mengyang Zhang
- Interdepartmental Neuroscience Program, Yale School of Medicine, New Haven, Connecticut 06520, USA
- Department of Neuroscience, Yale School of Medicine, New Haven, Connecticut 06520, USA
| | - Jacopo Antonello
- Department of Engineering Science, University of Oxford, Oxford OX1 3PJ, UK
| | - Peng Yuan
- Department of Neuroscience, Yale School of Medicine, New Haven, Connecticut 06520, USA
- Department of Neurology, Yale School of Medicine, New Haven, Connecticut 06520, USA
- Current Address: Department of Biology, Stanford University, Stanford, California 94304, USA
| | - Edward S. Allgeyer
- Department of Cell Biology, Yale School of Medicine, New Haven, Connecticut 06520, USA
- Current Address: The Gurdon Institute, University of Cambridge, Cambridge CB21QN, UK
| | - Dennis May
- Department of Genetics, Yale School of Medicine, New Haven, Connecticut 06520, USA
| | - Ons M’Saad
- Department of Biomedical Engineering, Yale School of Engineering & Applied Science, New Haven, Connecticut 06520, USA
- Department of Cell Biology, Yale School of Medicine, New Haven, Connecticut 06520, USA
| | - Phylicia Kidd
- Department of Cell Biology, Yale School of Medicine, New Haven, Connecticut 06520, USA
| | - Andrew E. S. Barentine
- Department of Biomedical Engineering, Yale School of Engineering & Applied Science, New Haven, Connecticut 06520, USA
- Department of Cell Biology, Yale School of Medicine, New Haven, Connecticut 06520, USA
| | - Valentina Greco
- Department of Cell Biology, Yale School of Medicine, New Haven, Connecticut 06520, USA
- Department of Genetics, Yale School of Medicine, New Haven, Connecticut 06520, USA
- Department of Dermatology, Yale Stem Cell Center, Yale Cancer Center, Yale School of Medicine, New Haven, Connecticut 06520, USA
| | - Jaime Grutzendler
- Interdepartmental Neuroscience Program, Yale School of Medicine, New Haven, Connecticut 06520, USA
- Department of Neuroscience, Yale School of Medicine, New Haven, Connecticut 06520, USA
- Department of Neurology, Yale School of Medicine, New Haven, Connecticut 06520, USA
| | - Martin J. Booth
- Department of Engineering Science, University of Oxford, Oxford OX1 3PJ, UK
| | - Joerg Bewersdorf
- Department of Biomedical Engineering, Yale School of Engineering & Applied Science, New Haven, Connecticut 06520, USA
- Department of Cell Biology, Yale School of Medicine, New Haven, Connecticut 06520, USA
- Corresponding author:
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6
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Jia X, Zhou W, Huang F, Guo H, Hu J. Monitoring algorithm of tilt angle based on sub-block plane fitting for high-resolution imaging. APPLIED OPTICS 2019; 58:5873-5882. [PMID: 31503894 DOI: 10.1364/ao.58.005873] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/11/2019] [Accepted: 06/26/2019] [Indexed: 06/10/2023]
Abstract
The limitation of mechanical structure and misoperations can result in a small tilt angle formed by the sample and the focal plane, which will decrease the resolution of the imaging system. Moreover, the small tilt angle is difficult to be observed. In order to solve this problem, a monitoring algorithm of tilt angle based on sub-block plane fitting for high-resolution imaging systems has been proposed, which is used to measure the initial angle of most 2D samples before imaging and assist users to determine the tilt degree of the sample. Experiments demonstrate that the proposed method can measure the tilt angle with a high measurement precision of 0.007° and a low residual tilt angle of 0.004°, indicating that the algorithm has high measurement precision and stability. Further results show that the quality of the image will be improved by 20%-27% when the tilt angle is 0.3056°, which means that the small degree of tilt of the sample can seriously damage the image quality. Therefore, the study of tilt angle measurement has great significance for high-resolution imaging systems.
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