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Needham LM, Saavedra C, Rasch JK, Sole-Barber D, Schweitzer BS, Fairhall AJ, Vollbrecht CH, Wan S, Podorova Y, Bergsten AJ, Mehlenbacher B, Zhang Z, Tenbrake L, Saimi J, Kneely LC, Kirkwood JS, Pfeifer H, Chapman ER, Goldsmith RH. Label-free detection and profiling of individual solution-phase molecules. Nature 2024; 629:1062-1068. [PMID: 38720082 DOI: 10.1038/s41586-024-07370-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2023] [Accepted: 04/02/2024] [Indexed: 05/21/2024]
Abstract
Most chemistry and biology occurs in solution, in which conformational dynamics and complexation underlie behaviour and function. Single-molecule techniques1 are uniquely suited to resolving molecular diversity and new label-free approaches are reshaping the power of single-molecule measurements. A label-free single-molecule method2-16 capable of revealing details of molecular conformation in solution17,18 would allow a new microscopic perspective of unprecedented detail. Here we use the enhanced light-molecule interactions in high-finesse fibre-based Fabry-Pérot microcavities19-21 to detect individual biomolecules as small as 1.2 kDa, a ten-amino-acid peptide, with signal-to-noise ratios (SNRs) >100, even as the molecules are unlabelled and freely diffusing in solution. Our method delivers 2D intensity and temporal profiles, enabling the distinction of subpopulations in mixed samples. Notably, we observe a linear relationship between passage time and molecular radius, unlocking the potential to gather crucial information about diffusion and solution-phase conformation. Furthermore, mixtures of biomolecule isomers of the same molecular weight and composition but different conformation can also be resolved. Detection is based on the creation of a new molecular velocity filter window and a dynamic thermal priming mechanism that make use of the interplay between optical and thermal dynamics22,23 and Pound-Drever-Hall (PDH) cavity locking24 to reveal molecular motion even while suppressing environmental noise. New in vitro ways of revealing molecular conformation, diversity and dynamics can find broad potential for applications in the life and chemical sciences.
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Affiliation(s)
- Lisa-Maria Needham
- Department of Chemistry, University of Wisconsin-Madison, Madison, WI, USA
- Yusuf Hamied Department of Chemistry, University of Cambridge, Cambridge, UK
- School of the Biological Sciences, University of Cambridge, Cambridge, UK
| | - Carlos Saavedra
- Department of Chemistry, University of Wisconsin-Madison, Madison, WI, USA
| | - Julia K Rasch
- Department of Chemistry, University of Wisconsin-Madison, Madison, WI, USA
| | - Daniel Sole-Barber
- Department of Chemistry, University of Wisconsin-Madison, Madison, WI, USA
| | - Beau S Schweitzer
- Department of Chemistry, University of Wisconsin-Madison, Madison, WI, USA
| | - Alex J Fairhall
- Department of Chemistry, University of Wisconsin-Madison, Madison, WI, USA
| | - Cecilia H Vollbrecht
- Department of Chemistry, University of Wisconsin-Madison, Madison, WI, USA
- Department of Chemistry and Biochemistry, Kalamazoo College, Kalamazoo, MI, USA
| | - Sushu Wan
- Department of Chemistry, University of Wisconsin-Madison, Madison, WI, USA
| | - Yulia Podorova
- Department of Chemistry, University of Wisconsin-Madison, Madison, WI, USA
| | - Anders J Bergsten
- Department of Chemistry, University of Wisconsin-Madison, Madison, WI, USA
| | | | - Zhao Zhang
- Howard Hughes Medical Institute, University of Wisconsin-Madison, Madison, WI, USA
- Department of Neuroscience, University of Wisconsin-Madison, Madison, WI, USA
| | - Lukas Tenbrake
- Institut für Angewandte Physik, Universität Bonn, Bonn, Germany
| | - Jovanna Saimi
- Department of Chemistry, University of Wisconsin-Madison, Madison, WI, USA
| | - Lucy C Kneely
- Department of Chemistry, University of Wisconsin-Madison, Madison, WI, USA
| | - Jackson S Kirkwood
- Department of Chemistry, University of Wisconsin-Madison, Madison, WI, USA
| | - Hannes Pfeifer
- Institut für Angewandte Physik, Universität Bonn, Bonn, Germany
| | - Edwin R Chapman
- Howard Hughes Medical Institute, University of Wisconsin-Madison, Madison, WI, USA
- Department of Neuroscience, University of Wisconsin-Madison, Madison, WI, USA
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2
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Needham LM, Saavedra C, Rasch JK, Sole-Barber D, Schweitzer BS, Fairhall AJ, Vollbrecht CH, Mehlenbacher B, Zhang Z, Tenbrake L, Pfeifer H, Chapman ER, Goldsmith RH. Label-free observation of individual solution phase molecules. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.03.24.534170. [PMID: 36993572 PMCID: PMC10055403 DOI: 10.1101/2023.03.24.534170] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 06/19/2023]
Abstract
The vast majority of chemistry and biology occurs in solution, and new label-free analytical techniques that can help resolve solution-phase complexity at the single-molecule level can provide new microscopic perspectives of unprecedented detail. Here, we use the increased light-molecule interactions in high-finesse fiber Fabry-Pérot microcavities to detect individual biomolecules as small as 1.2 kDa with signal-to-noise ratios >100, even as the molecules are freely diffusing in solution. Our method delivers 2D intensity and temporal profiles, enabling the distinction of sub-populations in mixed samples. Strikingly, we observe a linear relationship between passage time and molecular radius, unlocking the potential to gather crucial information about diffusion and solution-phase conformation. Furthermore, mixtures of biomolecule isomers of the same molecular weight can also be resolved. Detection is based on a novel molecular velocity filtering and dynamic thermal priming mechanism leveraging both photo-thermal bistability and Pound-Drever-Hall cavity locking. This technology holds broad potential for applications in life and chemical sciences and represents a major advancement in label-free in vitro single-molecule techniques.
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Affiliation(s)
- Lisa-Maria Needham
- Department of Chemistry, University of Wisconsin-Madison, WI, USA
- Yusuf Hamied Department of Chemistry, University of Cambridge, Cambridge, UK
| | - Carlos Saavedra
- Department of Chemistry, University of Wisconsin-Madison, WI, USA
| | - Julia K. Rasch
- Department of Chemistry, University of Wisconsin-Madison, WI, USA
| | | | | | - Alex J. Fairhall
- Department of Chemistry, University of Wisconsin-Madison, WI, USA
| | | | | | - Zhao Zhang
- Howard Hughes Medical Institute and the Department of Neuroscience, University of Wisconsin-Madison, WI, USA
| | - Lukas Tenbrake
- Institut für Angewandte Physik, Universität Bonn, Wegelerstr. 8, 53115 Bonn, Germany
| | - Hannes Pfeifer
- Institut für Angewandte Physik, Universität Bonn, Wegelerstr. 8, 53115 Bonn, Germany
| | - Edwin R. Chapman
- Howard Hughes Medical Institute and the Department of Neuroscience, University of Wisconsin-Madison, WI, USA
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3
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Doherty TH, Kuhn A, Kassa E. Multi-resonant open-access microcavity arrays for light matter interaction. OPTICS EXPRESS 2023; 31:6342-6355. [PMID: 36823893 DOI: 10.1364/oe.475921] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/19/2022] [Accepted: 01/09/2023] [Indexed: 06/18/2023]
Abstract
We report the realisation of a high-finesse open-access cavity array, tailored towards the creation of multiple coherent light-matter interfaces within a compact environment. We describe the key technical developments put in place to fabricate such a system, comprising the creation of tapered pyramidal substrates and an in-house laser machining setup. Cavities made from these mirrors are characterised, by laser spectroscopy, to possess similar optical properties to state-of-the-art fibre-tip cavities, but offer a compelling route towards improved performance, even when used to support only a single mode. The implementation of a 2×2 cavity array and the independent frequency tuning between three neighbouring sites are demonstrated.
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Pan Y, Li L, Zhou X, Huang D, Shen Z, Wang J, Li C, Guo G. Feedback and compensation scheme to suppress the thermal effects from a dipole trap beam for the optical fiber microcavity. OPTICS EXPRESS 2022; 30:46280-46293. [PMID: 36558585 DOI: 10.1364/oe.472022] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/29/2022] [Accepted: 11/17/2022] [Indexed: 06/17/2023]
Abstract
Cavity quantum electrodynamics (cavity QED) with neutral atoms is a promising platform for quantum information processing and optical fiber Fabry-Pérot microcavity with small mode volume is an important integrant for the large light-matter coupling strength. To transport cold atoms to the microcavity, a high-power optical dipole trap (ODT) beam perpendicular to the cavity axis is commonly used. However, the overlap between the ODT beam and the cavity mirrors causes thermal effects inducing a large cavity shift at the locking wavelength and a differential cavity shift at the probe wavelength which disturbs the cavity resonance. Here, we develop a feedback and compensation scheme to maintain the optical fiber microcavity resonant with the lasers at the locking and probe wavelengths simultaneously. The large cavity shift of 210 times the cavity linewidth, which makes the conventional PID scheme ineffective can be suppressed actively by a PIID feedback scheme with an additional I parameter. Differential cavity shift at the probe wavelength can be understood from the photothermal refraction and thermal expansion effects on the mirror coatings and be passively compensated by changing the frequency of the locking laser. A further normal-mode splitting measurement demonstrates the strong coupling between 85Rb atoms and cavity mode after the thermal effects are suppressed, which also confirms successful delivery and trapping of atoms into the optical cavity. This scheme can solve the thermal effects of the high-power ODT beam and will be helpful to cavity QED experimental research.
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Zhang Y, Shan C, Mølmer K. Ultranarrow Superradiant Lasing by Dark Atom-Photon Dressed States. PHYSICAL REVIEW LETTERS 2021; 126:123602. [PMID: 33834832 DOI: 10.1103/physrevlett.126.123602] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/19/2020] [Revised: 12/22/2020] [Accepted: 02/22/2021] [Indexed: 06/12/2023]
Abstract
We show that incoherent pumping of an optical lattice clock system with ultracold strontium-88 atoms produces laser light with a ≃10 Hz linewidth when the atoms are exposed to a magnetic field. This linewidth is orders of magnitude smaller than both the cavity linewidth and the incoherent atomic decay and excitation rates. The narrow lasing is due to an interplay of multiatom superradiant effects and the coupling of bright and dark atom-light dressed states by the magnetic field.
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Affiliation(s)
- Yuan Zhang
- Henan Key Laboratory of Diamond Optoelectronic Materials and Devices, Key Laboratory of Material Physics, Ministry of Education, School of Physics and Microelectronics, Zhengzhou University, Daxue Road 75, 450052 Zhengzhou, China
| | - Chongxin Shan
- Henan Key Laboratory of Diamond Optoelectronic Materials and Devices, Key Laboratory of Material Physics, Ministry of Education, School of Physics and Microelectronics, Zhengzhou University, Daxue Road 75, 450052 Zhengzhou, China
| | - Klaus Mølmer
- Center for Complex Quantum Systems, Department of Physics and Astronomy, Aarhus University, Ny Munkegade 120, DK-8000 Aarhus C, Denmark
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Saavedra C, Pandey D, Alt W, Pfeifer H, Meschede D. Tunable fiber Fabry-Perot cavities with high passive stability. OPTICS EXPRESS 2021; 29:974-982. [PMID: 33726322 DOI: 10.1364/oe.412273] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/12/2020] [Accepted: 12/03/2020] [Indexed: 06/12/2023]
Abstract
We present three high finesse tunable monolithic fiber Fabry-Perot cavities (FFPCs) with high passive mechanical stability. The fiber mirrors are fixed inside slotted glass ferrules, which guarantee an inherent alignment of the resonators. An attached piezoelectric element enables fast tuning of the FFPC resonance frequency over the entire free-spectral range for two of the designs. Stable locking of the cavity resonance is achieved for sub-Hertz feedback bandwidths, demonstrating the high passive stability. At the other limit, locking bandwidths up to tens of kilohertz, close to the first mechanical resonance, can be obtained. The root-mean-square frequency fluctuations are suppressed down to ∼2% of the cavity linewidth. Over a wide frequency range, the frequency noise is dominated by the thermal noise limit of the system's mechanical resonances. The demonstrated small footprint devices can be used advantageously in a broad range of applications like cavity-based sensing techniques, optical filters or quantum light-matter interfaces.
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Garcia S, Ferri F, Reichel J, Long R. Overlapping two standing waves in a microcavity for a multi-atom photon interface. OPTICS EXPRESS 2020; 28:15515-15528. [PMID: 32403578 DOI: 10.1364/oe.392207] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/08/2020] [Accepted: 04/23/2020] [Indexed: 06/11/2023]
Abstract
We develop a light-matter interface enabling strong and uniform coupling between a chain of cold atoms and photons of an optical cavity. This interface is a fiber Fabry-Perot cavity, doubly resonant for both the wavelength of the atomic transition and for a geometrically commensurate red-detuned intracavity trapping lattice. Fulfilling the condition of a strong and uniform atom-photon coupling requires optimization of the spatial overlap between the two standing waves in the cavity. In a strong-coupling cavity, where the mode waists and Rayleigh range are small, we derive the expression of the optimal trapping wavelength, taking into account the Gouy phase. The main parameter controlling the overlap of the standing waves is the relative phase shift at the reflection on the cavity mirrors between the two wavelengths, for which we derive the optimal value. We have built a microcavity optimized according to these results, employing custom-made mirrors with engineered reflection phase for both wavelengths. We present a method to measure with high precision the relative phase shift at reflection, which allows us to determine the spatial overlap of the two modes in this cavity.
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8
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Wang J, Nayak KP, Keloth J. Photothermal tuning and stabilization of a photonic crystal nanofiber cavity. OPTICS LETTERS 2019; 44:3996-3999. [PMID: 31415531 DOI: 10.1364/ol.44.003996] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/07/2019] [Accepted: 07/17/2019] [Indexed: 06/10/2023]
Abstract
We report the photothermal properties of a photonic crystal nanofiber (PhCN) cavity, which is fabricated using a femtosecond laser ablation technique, under ultra-high vacuum conditions. The results show that by launching a non-resonant guided light, the stopband of the PhCN, along with the cavity modes, can be tuned at a rate of 250 GHz (∼0.5 nm)/mW. Moreover, due to the thermal self-locking effect of a resonant light, a cavity mode with a finesse of 25 can be tuned over a few free spectral ranges using only a few μW of guided light. As an enabling step, we demonstrate a dual-mode locking scheme to thermally stabilize a cavity mode to the atomic line for single atom-based cavity quantum electrodynamics experiments.
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A robust single-beam optical trap for a gram-scale mechanical oscillator. Sci Rep 2017; 7:14546. [PMID: 29109531 PMCID: PMC5673969 DOI: 10.1038/s41598-017-15179-x] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2017] [Accepted: 10/23/2017] [Indexed: 11/25/2022] Open
Abstract
Precise optical control of microscopic particles has been mastered over the past three decades, with atoms, molecules and nano-particles now routinely trapped and cooled with extraordinary precision, enabling rapid progress in the study of quantum phenomena. Achieving the same level of control over macroscopic objects is expected to bring further advances in precision measurement, quantum information processing and fundamental tests of quantum mechanics. However, cavity optomechanical systems dominated by radiation pressure – so-called ‘optical springs’ – are inherently unstable due to the delayed dynamical response of the cavity. Here we demonstrate a fully stable, single-beam optical trap for a gram-scale mechanical oscillator. The interaction of radiation pressure with thermo-optic feedback generates damping that exceeds the mechanical loss by four orders of magnitude. The stability of the resultant spring is robust to changes in laser power and detuning, and allows purely passive self-locking of the cavity. Our results open up a new way of trapping and cooling macroscopic objects for optomechanical experiments.
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10
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Janitz E, Ruf M, Fontana Y, Sankey J, Childress L. High mechanical bandwidth fiber-coupled Fabry-Perot cavity. OPTICS EXPRESS 2017; 25:20932-20943. [PMID: 29041769 DOI: 10.1364/oe.25.020932] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/29/2017] [Accepted: 08/12/2017] [Indexed: 06/07/2023]
Abstract
Fiber-based optical microcavities exhibit high quality factor and low mode volume resonances that make them attractive for coupling light to individual atoms or other microscopic systems. Moreover, their low mass should lead to excellent mechanical response up to high frequencies, opening the possibility for high bandwidth stabilization of the cavity length. Here, we demonstrate a locking bandwidth of 44 kHz achieved using a simple, compact design that exploits these properties. Owing to the simplicity of fiber feedthroughs and lack of free-space alignment, this design is inherently compatible with vacuum and cryogenic environments. We measure the transfer function of the feedback circuit (closed-loop) and the cavity mount itself (open-loop), which, combined with simulations of the mechanical response of our device, provide insight into underlying limitations of the design as well as further improvements that can be made.
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Reinhardt C, Müller T, Sankey JC. Simple delay-limited sideband locking with heterodyne readout. OPTICS EXPRESS 2017; 25:1582-1597. [PMID: 28158040 DOI: 10.1364/oe.25.001582] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
We present a robust sideband laser locking technique ideally suited for applications requiring low probe power and heterodyne readout. By feeding back to a high-bandwidth voltage-controlled oscillator, we lock a first-order phase-modulation sideband to a high-finesse Fabry-Perot cavity in ambient conditions, achieving a closed-loop bandwidth of 3.5 MHz (with a single integrator) limited fundamentally by the signal delay. The measured transfer function of the closed loop agrees with a simple model based on ideal system components, and from this we suggest a modified design that should achieve a bandwidth exceeding 6 MHz with a near-causally limited feedback gain as high as 4 × 107 at 1 kHz. The off-resonance optical carrier enables alignment-free heterodyne readout, alleviating the need for additional lasers or optical modulators.
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