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Aziz JAB, Smith-Dryden S, E A Saleh B, Li G. Three-dimensional tomographic reconstruction using Voronoi weighting. OPTICS EXPRESS 2024; 32:20256-20267. [PMID: 38859140 DOI: 10.1364/oe.521968] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/21/2024] [Accepted: 04/21/2024] [Indexed: 06/12/2024]
Abstract
Three-dimensional tomographic reconstruction requires careful selection of the illumination angles, often under certain measurement constraints. When the angular distribution must be nonuniform, appropriate selection of the reconstruction weights is necessary. We show that Voronoi weighting can significantly improve the fidelity of optical diffraction tomography.
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2
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Ivanic B, Barolak J, Car C, Clarke C, Goldberger D, Goeckeritz J, Meier A, Adams DE. At-focus scanning ptychography for high resolution imaging with a wide field of view. OPTICS EXPRESS 2024; 32:6555-6566. [PMID: 38439355 DOI: 10.1364/oe.511788] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/10/2023] [Accepted: 01/08/2024] [Indexed: 03/06/2024]
Abstract
From manufacturing to medicine, there is a demand for phase-resolved, high resolution imaging of large samples. Here we present at-focus scanning ptychography (AFSP), a novel ptychographic metrology station designed for high resolution imaging over a large field of view. AFSP builds on scanning ptychography, but samples remain stationary during the imaging process, allowing for in-situ imaging. We demonstrate a resolution of 44.19μm, present images of spherical and freeform optics with a FOV of over 4cm, and validate the fidelity of the AFSP system by comparing it to established commercial instruments. AFSP's comparable performance underscores its credibility as a valuable addition to quantitative phase imaging technologies.
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Veler A, Birk M, Dobias C, Correa RA, Sidorenko P, Cohen O. Single-shot ptychographic imaging of non-repetitive ultrafast events. OPTICS LETTERS 2024; 49:178-181. [PMID: 38194522 DOI: 10.1364/ol.502848] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/10/2023] [Accepted: 11/28/2023] [Indexed: 01/11/2024]
Abstract
We demonstrate experimentally high-speed ptychographic imaging of non-repetitive complex-valued events. Three time-resolved complex-valued frames are reconstructed from data recorded in a single camera snapshot. The temporal resolution of the microscope is determined by delays between illuminating pulses. The ability to image amplitude and phase of nonrepetitive events with ultrafast temporal resolution will open new opportunities in science and technology.
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Goldberger D, Barolak J, Schmidt D, Ivanic B, Schrama CAM, Car C, Larsen R, Durfee CG, Adams DE. Single-pulse, reference-free, spatiotemporal characterization of ultrafast laser pulse beams via broadband ptychography. OPTICS LETTERS 2023; 48:3455-3458. [PMID: 37390154 DOI: 10.1364/ol.493234] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/04/2023] [Accepted: 05/24/2023] [Indexed: 07/02/2023]
Abstract
Ultrafast laser pulse beams are four-dimensional, space-time phenomena that can exhibit complicated, coupled spatial and temporal profiles. Tailoring the spatiotemporal profile of an ultrafast pulse beam is necessary to optimize the focused intensity and to engineer exotic spatiotemporally shaped pulse beams. Here we demonstrate a single-pulse, reference-free spatiotemporal characterization technique based on two colocated synchronized measurements: (1) broadband single-shot ptychography and (2) single-shot frequency resolved optical gating. We apply the technique to measure the nonlinear propagation of an ultrafast pulse beam through a fused silica window. Our spatiotemporal characterization method represents a major contribution to the growing field of spatiotemporally engineered ultrafast laser pulse beams.
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Lee C, Hugonnet H, Park J, Lee MJ, Park W, Park Y. Single-shot refractive index slice imaging using spectrally multiplexed optical transfer function reshaping. OPTICS EXPRESS 2023; 31:13806-13816. [PMID: 37157259 DOI: 10.1364/oe.485559] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
Abstract
The refractive index (RI) of cells and tissues is crucial in pathophysiology as a noninvasive and quantitative imaging contrast. Although its measurements have been demonstrated using three-dimensional quantitative phase imaging methods, these methods often require bulky interferometric setups or multiple measurements, which limits the measurement sensitivity and speed. Here, we present a single-shot RI imaging method that visualizes the RI of the in-focus region of a sample. By exploiting spectral multiplexing and optical transfer function engineering, three color-coded intensity images of a sample with three optimized illuminations were simultaneously obtained in a single-shot measurement. The measured intensity images were then deconvoluted to obtain the RI image of the in-focus slice of the sample. As a proof of concept, a setup was built using Fresnel lenses and a liquid-crystal display. For validation purposes, we measured microspheres of known RI and cross-validated the results with simulated results. Various static and highly dynamic biological cells were imaged to demonstrate that the proposed method can conduct single-shot RI slice imaging of biological samples with subcellular resolution.
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Wang T, Jiang S, Song P, Wang R, Yang L, Zhang T, Zheng G. Optical ptychography for biomedical imaging: recent progress and future directions [Invited]. BIOMEDICAL OPTICS EXPRESS 2023; 14:489-532. [PMID: 36874495 PMCID: PMC9979669 DOI: 10.1364/boe.480685] [Citation(s) in RCA: 24] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/10/2022] [Revised: 12/10/2022] [Accepted: 12/10/2022] [Indexed: 05/25/2023]
Abstract
Ptychography is an enabling microscopy technique for both fundamental and applied sciences. In the past decade, it has become an indispensable imaging tool in most X-ray synchrotrons and national laboratories worldwide. However, ptychography's limited resolution and throughput in the visible light regime have prevented its wide adoption in biomedical research. Recent developments in this technique have resolved these issues and offer turnkey solutions for high-throughput optical imaging with minimum hardware modifications. The demonstrated imaging throughput is now greater than that of a high-end whole slide scanner. In this review, we discuss the basic principle of ptychography and summarize the main milestones of its development. Different ptychographic implementations are categorized into four groups based on their lensless/lens-based configurations and coded-illumination/coded-detection operations. We also highlight the related biomedical applications, including digital pathology, drug screening, urinalysis, blood analysis, cytometric analysis, rare cell screening, cell culture monitoring, cell and tissue imaging in 2D and 3D, polarimetric analysis, among others. Ptychography for high-throughput optical imaging, currently in its early stages, will continue to improve in performance and expand in its applications. We conclude this review article by pointing out several directions for its future development.
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Affiliation(s)
- Tianbo Wang
- Department of Biomedical Engineering, University of Connecticut, Storrs, CT 06269, USA
- These authors contributed equally to this work
| | - Shaowei Jiang
- Department of Biomedical Engineering, University of Connecticut, Storrs, CT 06269, USA
- These authors contributed equally to this work
| | - Pengming Song
- Department of Biomedical Engineering, University of Connecticut, Storrs, CT 06269, USA
- These authors contributed equally to this work
| | - Ruihai Wang
- Department of Biomedical Engineering, University of Connecticut, Storrs, CT 06269, USA
| | - Liming Yang
- Department of Biomedical Engineering, University of Connecticut, Storrs, CT 06269, USA
| | - Terrance Zhang
- Department of Biomedical Engineering, University of Connecticut, Storrs, CT 06269, USA
| | - Guoan Zheng
- Department of Biomedical Engineering, University of Connecticut, Storrs, CT 06269, USA
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Kharitonov K, Mehrjoo M, Ruiz-Lopez M, Keitel B, Kreis S, Gang SG, Pan R, Marras A, Correa J, Wunderer CB, Plönjes E. Single-shot ptychography at a soft X-ray free-electron laser. Sci Rep 2022; 12:14430. [PMID: 36002577 PMCID: PMC9402553 DOI: 10.1038/s41598-022-18605-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2022] [Accepted: 08/16/2022] [Indexed: 11/05/2022] Open
Abstract
In this work, single-shot ptychography was adapted to the XUV range and, as a proof of concept, performed at the free-electron laser FLASH at DESY to obtain a high-resolution reconstruction of a test sample. Ptychography is a coherent diffraction imaging technique capable of imaging extended samples with diffraction-limited resolution. However, its scanning nature makes ptychography time-consuming and also prevents its application for mapping of dynamical processes. Single-shot ptychography can be realized by collecting the diffraction patterns of multiple overlapping beams in one shot and, in recent years, several concepts based on two con-focal lenses were employed in the visible regime. Unfortunately, this approach cannot be extended straightforwardly to X-ray wavelengths due to the use of refractive optics. Here, a novel single-shot ptychography setup utilizes a combination of X-ray focusing optics with a two-dimensional beam-splitting diffraction grating. It facilitates single-shot imaging of extended samples at X-ray wavelengths.
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Affiliation(s)
| | | | | | | | - Svea Kreis
- Deutsches Elektronen-Synchrotron DESY, Hamburg, Germany
| | - Seung-Gi Gang
- Deutsches Elektronen-Synchrotron DESY, Hamburg, Germany
| | - Rui Pan
- Deutsches Elektronen-Synchrotron DESY, Hamburg, Germany
| | - Alessandro Marras
- Deutsches Elektronen-Synchrotron DESY, Hamburg, Germany
- Center for Free-Electron Laser Science CFEL, Deutsches Elektronen-Synchrotron DESY, Hamburg, Germany
| | - Jonathan Correa
- Deutsches Elektronen-Synchrotron DESY, Hamburg, Germany
- Center for Free-Electron Laser Science CFEL, Deutsches Elektronen-Synchrotron DESY, Hamburg, Germany
| | - Cornelia B Wunderer
- Deutsches Elektronen-Synchrotron DESY, Hamburg, Germany
- Center for Free-Electron Laser Science CFEL, Deutsches Elektronen-Synchrotron DESY, Hamburg, Germany
| | - Elke Plönjes
- Deutsches Elektronen-Synchrotron DESY, Hamburg, Germany
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Brooks NJ, Wang B, Binnie I, Tanksalvala M, Esashi Y, Knobloch JL, Nguyen QLD, McBennett B, Jenkins NW, Gui G, Zhang Z, Kapteyn HC, Murnane MM, Bevis CS. Temporal and spectral multiplexing for EUV multibeam ptychography with a high harmonic light source. OPTICS EXPRESS 2022; 30:30331-30346. [PMID: 36242139 DOI: 10.1364/oe.458955] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/21/2022] [Accepted: 07/13/2022] [Indexed: 06/16/2023]
Abstract
We demonstrate temporally multiplexed multibeam ptychography implemented for the first time in the EUV, by using a high harmonic based light source. This allows for simultaneous imaging of different sample areas, or of the same area at different times or incidence angles. Furthermore, we show that this technique is compatible with wavelength multiplexing for multibeam spectroscopic imaging, taking full advantage of the temporal and spectral characteristics of high harmonic light sources. This technique enables increased data throughput using a simple experimental implementation and with high photon efficiency.
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Barolak J, Goldberger D, Squier J, Bellouard Y, Durfee C, Adams D. Wavelength-multiplexed single-shot ptychography. Ultramicroscopy 2022; 233:113418. [PMID: 34801944 DOI: 10.1016/j.ultramic.2021.113418] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2021] [Revised: 10/04/2021] [Accepted: 10/16/2021] [Indexed: 10/19/2022]
Abstract
We present the first experimental demonstration of wavelength-multiplexing in single-shot ptychography. Specifically, we experimentally reconstruct the complex transmission profile of a wavelength-independent and wavelength-dependent object simultaneously for 532 nm and 633 nm probing wavelengths. In addition, we discuss the advantages of a more general approach to detector segmentation in single-shot ptychography. A minimization to correct for uncertainties in a priori information that is required for single-shot geometries is presented along with a novel probe constraint. Furthermore, this technique is complementary to dual-wavelength interferometry without the need for an external reference. This work is enabling to imaging technologies and applications such as broadband single-shot ptychography, time-resolved imaging by multiplexed ptychography, real-time inspection for laser micro-machining, and plasma imaging.
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Affiliation(s)
- Jonathan Barolak
- Department of Physics, Colorado School of Mines, 1523 Illinois Street, Golden, Colorado 80401, United States of America.
| | - David Goldberger
- Department of Physics, Colorado School of Mines, 1523 Illinois Street, Golden, Colorado 80401, United States of America
| | - Jeff Squier
- Department of Physics, Colorado School of Mines, 1523 Illinois Street, Golden, Colorado 80401, United States of America
| | - Yves Bellouard
- Galatea Laboratory, STI, Ecole Polytechnique Fédérale de Lausanne (EPFL), Neuchâtel, Switzerland
| | - Charles Durfee
- Department of Physics, Colorado School of Mines, 1523 Illinois Street, Golden, Colorado 80401, United States of America
| | - Daniel Adams
- Department of Physics, Colorado School of Mines, 1523 Illinois Street, Golden, Colorado 80401, United States of America
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Guo Z, Levitan A, Barbastathis G, Comin R. Randomized probe imaging through deep k-learning. OPTICS EXPRESS 2022; 30:2247-2264. [PMID: 35209369 DOI: 10.1364/oe.445498] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/18/2021] [Accepted: 12/22/2021] [Indexed: 06/14/2023]
Abstract
Randomized probe imaging (RPI) is a single-frame diffractive imaging method that uses highly randomized light to reconstruct the spatial features of a scattering object. The reconstruction process, known as phase retrieval, aims to recover a unique solution for the object without measuring the far-field phase information. Typically, reconstruction is done via time-consuming iterative algorithms. In this work, we propose a fast and efficient deep learning based method to reconstruct phase objects from RPI data. The method, which we call deep k-learning, applies the physical propagation operator to generate an approximation of the object as an input to the neural network. This way, the network no longer needs to parametrize the far-field diffraction physics, dramatically improving the results. Deep k-learning is shown to be computationally efficient and robust to Poisson noise. The advantages provided by our method may enable the analysis of far larger datasets in photon starved conditions, with important applications to the study of dynamic phenomena in physical science and biological engineering.
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Goldberger D, Schmidt D, Barolak J, Ivanic B, Durfee CG, Adams DE. Spatiospectral characterization of ultrafast pulse-beams by multiplexed broadband ptychography. OPTICS EXPRESS 2021; 29:32474-32490. [PMID: 34615317 DOI: 10.1364/oe.433752] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/09/2021] [Accepted: 09/10/2021] [Indexed: 06/13/2023]
Abstract
Ultrafast pulse-beam characterization is critical for diverse scientific and industrial applications from micromachining to generating the highest intensity laser pulses. The four-dimensional structure of a pulse-beam, E~(x,y,z,ω), can be fully characterized by coupling spatiospectral metrology with spectral phase measurement. When temporal pulse dynamics are not of primary interest, spatiospectral characterization of a pulse-beam provides crucial information even without spectral phase. Here we demonstrate spatiospectral characterization of pulse-beams via multiplexed broadband ptychography. The complex spatial profiles of multiple spectral components, E~(x,y,ω), from modelocked Ti:sapphire and from extreme ultra-violet pulse-beams are reconstructed with minimum intervening optics and no refocusing. Critically, our technique does not require spectral filters, interferometers, or reference pulses.
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Chang C, Pan X, Tao H, Liu C, Veetil SP, Zhu J. 3D single-shot ptychography with highly tilted illuminations. OPTICS EXPRESS 2021; 29:30878-30891. [PMID: 34614805 DOI: 10.1364/oe.434613] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/18/2021] [Accepted: 08/10/2021] [Indexed: 06/13/2023]
Abstract
A method based on highly tilted illumination and non-paraxial iterative computation is proposed to improve the image quality of single-shot 3D ptychography. A thick sample is illuminated with a cluster of laser beams that are separated by large enough angles to record each diffraction pattern distinctly in a single exposure. 3D structure of the thick sample is accurately reconstructed from recorded diffraction patterns using a modified multi-slice algorithm to process non-paraxial illumination. Sufficient number of recorded diffraction patterns with noticeably low crosstalk enhances the fidelity of reconstruction significantly over single-shot 3D ptychography methods that are based on paraxial illumination. Experimental observations guided by the results of numerical simulations show the feasibility of the proposed method.
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Wang B, He Z, Zhang F. Coherent modulation imaging using unknown modulators. OPTICS EXPRESS 2021; 29:30035-30044. [PMID: 34614735 DOI: 10.1364/oe.434111] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/15/2021] [Accepted: 08/16/2021] [Indexed: 06/13/2023]
Abstract
Coherent modulation imaging (CMI) is an effective lensless diffraction imaging method with fast algorithmic convergence and high robustness to data defects. In the reported algorithms for CMI, one important requirement is that the modulator function need to be known a priori; and an additional step for the modulator characterization is required to be carried out in advance by other methods, such as ptychography, which could be cumbersome in practice. Here, we propose an improved algorithm that allows for the transmission function of a completely unknown modulator to be recovered during the same iterative process of image reconstruction. We have verified the method in both simulations and optical experiments. This improvement would turn CMI into a more practical and standalone technique for broader applications in biology and materials science.
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