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For: Takeuchi N, Hogeweg P, Koonin EV. On the origin of DNA genomes: evolution of the division of labor between template and catalyst in model replicator systems. PLoS Comput Biol 2011;7:e1002024. [PMID: 21455287 PMCID: PMC3063752 DOI: 10.1371/journal.pcbi.1002024] [Citation(s) in RCA: 44] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2010] [Accepted: 02/14/2011] [Indexed: 12/01/2022]  Open
Number Cited by Other Article(s)
1
Fu Y, Takeuchi N. Evolution of the division of labour between templates and catalysts in spatial replicator models. J Evol Biol 2024;37:1158-1169. [PMID: 39120521 DOI: 10.1093/jeb/voae098] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2024] [Revised: 05/29/2024] [Accepted: 08/02/2024] [Indexed: 08/10/2024]
2
Forterre P. The Last Universal Common Ancestor of Ribosome-Encoding Organisms: Portrait of LUCA. J Mol Evol 2024;92:550-583. [PMID: 39158619 DOI: 10.1007/s00239-024-10186-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2024] [Accepted: 06/25/2024] [Indexed: 08/20/2024]
3
Park H, Higgs PG. Evolution of RNA Viruses: Reasons for the Existence of Separate Plus, Minus, and Double-Strand Replication Strategies. Viruses 2024;16:1081. [PMID: 39066243 PMCID: PMC11281585 DOI: 10.3390/v16071081] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2024] [Revised: 06/28/2024] [Accepted: 07/02/2024] [Indexed: 07/28/2024]  Open
4
Girard C. The tri-flow adaptiveness of codes in major evolutionary transitions. Biosystems 2024;237:105133. [PMID: 38336225 DOI: 10.1016/j.biosystems.2024.105133] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2023] [Revised: 01/26/2024] [Accepted: 01/27/2024] [Indexed: 02/12/2024]
5
Luo Y, Liang M, Yu C, Ma W. Circular at the very beginning: on the initial genomes in the RNA world. RNA Biol 2024;21:17-31. [PMID: 39016036 PMCID: PMC11259081 DOI: 10.1080/15476286.2024.2380130] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Revised: 06/25/2024] [Accepted: 07/10/2024] [Indexed: 07/18/2024]  Open
6
von der Dunk SHA, Hogeweg P, Snel B. Obligate endosymbiosis enables genome expansion during eukaryogenesis. Commun Biol 2023;6:777. [PMID: 37491455 PMCID: PMC10368719 DOI: 10.1038/s42003-023-05153-x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2023] [Accepted: 07/18/2023] [Indexed: 07/27/2023]  Open
7
Colizzi ES, van Dijk B, Merks RMH, Rozen DE, Vroomans RMA. Evolution of genome fragility enables microbial division of labor. Mol Syst Biol 2023;19:e11353. [PMID: 36727665 PMCID: PMC9996244 DOI: 10.15252/msb.202211353] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2022] [Revised: 01/17/2023] [Accepted: 01/19/2023] [Indexed: 02/03/2023]  Open
8
Towards an RNA/Peptides World by the Direct RNA Template Mechanism: The Emergence of Membrane-Stabilizing Peptides in RNA-Based Protocells. Life (Basel) 2023;13:life13020523. [PMID: 36836881 PMCID: PMC9966593 DOI: 10.3390/life13020523] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2023] [Revised: 01/29/2023] [Accepted: 02/06/2023] [Indexed: 02/17/2023]  Open
9
Rolling Circles as a Means of Encoding Genes in the RNA World. Life (Basel) 2022;12:life12091373. [PMID: 36143408 PMCID: PMC9505818 DOI: 10.3390/life12091373] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2022] [Revised: 08/17/2022] [Accepted: 08/23/2022] [Indexed: 11/25/2022]  Open
10
Liang Y, Yu C, Ma W. The automatic parameter-exploration with a machine-learning-like approach: Powering the evolutionary modeling on the origin of life. PLoS Comput Biol 2021;17:e1009761. [PMID: 34965249 PMCID: PMC8752021 DOI: 10.1371/journal.pcbi.1009761] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2021] [Revised: 01/11/2022] [Accepted: 12/15/2021] [Indexed: 11/19/2022]  Open
11
Yukawa K, Mizuuchi R, Ichihashi N. Relaxed Substrate Specificity in Qβ Replicase through Long-Term In Vitro Evolution. LIFE (BASEL, SWITZERLAND) 2021;12:life12010032. [PMID: 35054425 PMCID: PMC8778257 DOI: 10.3390/life12010032] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/27/2021] [Revised: 12/18/2021] [Accepted: 12/23/2021] [Indexed: 11/16/2022]
12
Roy S, Sengupta S. Evolution towards increasing complexity through functional diversification in a protocell model of the RNA world. Proc Biol Sci 2021;288:20212098. [PMID: 34784760 PMCID: PMC8596018 DOI: 10.1098/rspb.2021.2098] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2021] [Accepted: 10/21/2021] [Indexed: 11/12/2022]  Open
13
Origin of viruses: primordial replicators recruiting capsids from hosts. Nat Rev Microbiol 2020;17:449-458. [PMID: 31142823 DOI: 10.1038/s41579-019-0205-6] [Citation(s) in RCA: 119] [Impact Index Per Article: 23.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
14
Takeuchi N, Kaneko K. The origin of the central dogma through conflicting multilevel selection. Proc Biol Sci 2019;286:20191359. [PMID: 31575361 PMCID: PMC6790754 DOI: 10.1098/rspb.2019.1359] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]  Open
15
Berezovskaya F, Karev GP, Katsnelson MI, Wolf YI, Koonin EV. Stable coevolutionary regimes for genetic parasites and their hosts: you must differ to coevolve. Biol Direct 2018;13:27. [PMID: 30621743 PMCID: PMC6822691 DOI: 10.1186/s13062-018-0230-9] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2018] [Accepted: 11/29/2018] [Indexed: 12/19/2022]  Open
16
Physical foundations of biological complexity. Proc Natl Acad Sci U S A 2018;115:E8678-E8687. [PMID: 30150417 PMCID: PMC6140470 DOI: 10.1073/pnas.1807890115] [Citation(s) in RCA: 61] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]  Open
17
Consequences of EPR–Proton Qubits Populating DNA. ADVANCES IN QUANTUM CHEMISTRY 2018. [DOI: 10.1016/bs.aiq.2017.12.001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
18
Takeuchi N, Hogeweg P, Kaneko K. Conceptualizing the origin of life in terms of evolution. PHILOSOPHICAL TRANSACTIONS. SERIES A, MATHEMATICAL, PHYSICAL, AND ENGINEERING SCIENCES 2017;375:rsta.2016.0346. [PMID: 29133445 PMCID: PMC5686403 DOI: 10.1098/rsta.2016.0346] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Accepted: 05/08/2017] [Indexed: 06/07/2023]
19
Koonin EV, Wolf YI, Katsnelson MI. Inevitability of the emergence and persistence of genetic parasites caused by evolutionary instability of parasite-free states. Biol Direct 2017;12:31. [PMID: 29202832 PMCID: PMC5715634 DOI: 10.1186/s13062-017-0202-5] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2017] [Accepted: 11/22/2017] [Indexed: 01/02/2023]  Open
20
Koonin EV. Viruses and mobile elements as drivers of evolutionary transitions. Philos Trans R Soc Lond B Biol Sci 2017;371:rstb.2015.0442. [PMID: 27431520 PMCID: PMC4958936 DOI: 10.1098/rstb.2015.0442] [Citation(s) in RCA: 88] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 02/15/2016] [Indexed: 12/22/2022]  Open
21
The origin of a primordial genome through spontaneous symmetry breaking. Nat Commun 2017;8:250. [PMID: 28811464 PMCID: PMC5557888 DOI: 10.1038/s41467-017-00243-x] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2017] [Accepted: 06/13/2017] [Indexed: 11/30/2022]  Open
22
Szostak N, Synak J, Borowski M, Wasik S, Blazewicz J. Simulating the origins of life: The dual role of RNA replicases as an obstacle to evolution. PLoS One 2017;12:e0180827. [PMID: 28700697 PMCID: PMC5507279 DOI: 10.1371/journal.pone.0180827] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2017] [Accepted: 06/21/2017] [Indexed: 01/08/2023]  Open
23
Wu S, Yu C, Zhang W, Yin S, Chen Y, Feng Y, Ma W. Tag mechanism as a strategy for the RNA replicase to resist parasites in the RNA world. PLoS One 2017;12:e0172702. [PMID: 28253281 PMCID: PMC5333815 DOI: 10.1371/journal.pone.0172702] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2016] [Accepted: 02/08/2017] [Indexed: 01/01/2023]  Open
24
Koonin EV, Starokadomskyy P. Are viruses alive? The replicator paradigm sheds decisive light on an old but misguided question. STUDIES IN HISTORY AND PHILOSOPHY OF BIOLOGICAL AND BIOMEDICAL SCIENCES 2016;59:125-34. [PMID: 26965225 PMCID: PMC5406846 DOI: 10.1016/j.shpsc.2016.02.016] [Citation(s) in RCA: 51] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/20/2016] [Accepted: 02/27/2016] [Indexed: 05/18/2023]
25
Iranzo J, Puigbò P, Lobkovsky AE, Wolf YI, Koonin EV. Inevitability of Genetic Parasites. Genome Biol Evol 2016;8:2856-2869. [PMID: 27503291 PMCID: PMC5631039 DOI: 10.1093/gbe/evw193] [Citation(s) in RCA: 63] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]  Open
26
The Double-Stranded DNA Virosphere as a Modular Hierarchical Network of Gene Sharing. mBio 2016;7:mBio.00978-16. [PMID: 27486193 PMCID: PMC4981718 DOI: 10.1128/mbio.00978-16] [Citation(s) in RCA: 123] [Impact Index Per Article: 13.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]  Open
27
Colizzi ES, Hogeweg P. Parasites Sustain and Enhance RNA-Like Replicators through Spatial Self-Organisation. PLoS Comput Biol 2016;12:e1004902. [PMID: 27120344 PMCID: PMC4847872 DOI: 10.1371/journal.pcbi.1004902] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2016] [Accepted: 04/07/2016] [Indexed: 11/19/2022]  Open
28
Rapid radiation in bacteria leads to a division of labour. Nat Commun 2016;7:10508. [PMID: 26852925 PMCID: PMC4748119 DOI: 10.1038/ncomms10508] [Citation(s) in RCA: 52] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2015] [Accepted: 12/12/2015] [Indexed: 12/24/2022]  Open
29
Crucial steps to life: From chemical reactions to code using agents. Biosystems 2016;140:49-57. [DOI: 10.1016/j.biosystems.2015.12.007] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2015] [Revised: 12/05/2015] [Accepted: 12/07/2015] [Indexed: 01/21/2023]
30
Ma W, Yu C, Zhang W, Wu S, Feng Y. The emergence of DNA in the RNA world: an in silico simulation study of genetic takeover. BMC Evol Biol 2015;15:272. [PMID: 26643199 PMCID: PMC4672488 DOI: 10.1186/s12862-015-0548-1] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2015] [Accepted: 11/20/2015] [Indexed: 11/10/2022]  Open
31
Altstein AD. The progene hypothesis: the nucleoprotein world and how life began. Biol Direct 2015;10:67. [PMID: 26612610 PMCID: PMC4662029 DOI: 10.1186/s13062-015-0096-z] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2015] [Accepted: 11/13/2015] [Indexed: 12/16/2022]  Open
32
Iranzo J, Lobkovsky AE, Wolf YI, Koonin EV. Virus-host arms race at the joint origin of multicellularity and programmed cell death. Cell Cycle 2015;13:3083-8. [PMID: 25486567 PMCID: PMC4615056 DOI: 10.4161/15384101.2014.949496] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]  Open
33
Wills PR, Nieselt K, McCaskill JS. Emergence of coding and its specificity as a physico-informatic problem. ORIGINS LIFE EVOL B 2015;45:249-55. [PMID: 25813662 DOI: 10.1007/s11084-015-9434-5] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
34
Virus world as an evolutionary network of viruses and capsidless selfish elements. Microbiol Mol Biol Rev 2015;78:278-303. [PMID: 24847023 DOI: 10.1128/mmbr.00049-13] [Citation(s) in RCA: 160] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]  Open
35
Koonin EV, Dolja VV, Krupovic M. Origins and evolution of viruses of eukaryotes: The ultimate modularity. Virology 2015;479-480:2-25. [PMID: 25771806 PMCID: PMC5898234 DOI: 10.1016/j.virol.2015.02.039] [Citation(s) in RCA: 352] [Impact Index Per Article: 35.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2015] [Revised: 02/19/2015] [Accepted: 02/20/2015] [Indexed: 01/04/2023]
36
Shay JA, Huynh C, Higgs PG. The origin and spread of a cooperative replicase in a prebiotic chemical system. J Theor Biol 2015;364:249-59. [DOI: 10.1016/j.jtbi.2014.09.019] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2014] [Revised: 08/19/2014] [Accepted: 09/12/2014] [Indexed: 11/26/2022]
37
Boza G, Szilágyi A, Kun Á, Santos M, Szathmáry E. Evolution of the division of labor between genes and enzymes in the RNA world. PLoS Comput Biol 2014;10:e1003936. [PMID: 25474573 PMCID: PMC4256009 DOI: 10.1371/journal.pcbi.1003936] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2014] [Accepted: 09/26/2014] [Indexed: 11/18/2022]  Open
38
The case for an early biological origin of DNA. J Mol Evol 2014;79:204-12. [PMID: 25425102 PMCID: PMC4247479 DOI: 10.1007/s00239-014-9656-6] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2014] [Accepted: 11/18/2014] [Indexed: 11/16/2022]
39
Colizzi ES, Hogeweg P. Evolution of functional diversification within quasispecies. Genome Biol Evol 2014;6:1990-2007. [PMID: 25056399 PMCID: PMC4159002 DOI: 10.1093/gbe/evu150] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
40
Ichihashi N, Yomo T. Positive roles of compartmentalization in internal reactions. Curr Opin Chem Biol 2014;22:12-7. [PMID: 25032508 DOI: 10.1016/j.cbpa.2014.06.011] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2014] [Revised: 06/09/2014] [Accepted: 06/14/2014] [Indexed: 12/23/2022]
41
Koonin EV. The origins of cellular life. Antonie Van Leeuwenhoek 2014;106:27-41. [PMID: 24756907 PMCID: PMC7087693 DOI: 10.1007/s10482-014-0169-5] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2014] [Accepted: 04/03/2014] [Indexed: 12/11/2022]
42
Dunn IS. Are molecular alphabets universal enabling factors for the evolution of complex life? ORIGINS LIFE EVOL B 2013;43:445-64. [PMID: 24510462 DOI: 10.1007/s11084-014-9354-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2013] [Accepted: 01/22/2014] [Indexed: 10/25/2022]
43
Ma W, Yu C, Zhang W. Circularity and self-cleavage as a strategy for the emergence of a chromosome in the RNA-based protocell. Biol Direct 2013;8:21. [PMID: 23971788 PMCID: PMC3765326 DOI: 10.1186/1745-6150-8-21] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2013] [Accepted: 08/21/2013] [Indexed: 12/23/2022]  Open
44
Koonin EV, Dolja VV. A virocentric perspective on the evolution of life. Curr Opin Virol 2013;3:546-57. [PMID: 23850169 PMCID: PMC4326007 DOI: 10.1016/j.coviro.2013.06.008] [Citation(s) in RCA: 159] [Impact Index Per Article: 13.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2013] [Revised: 06/12/2013] [Accepted: 06/13/2013] [Indexed: 01/12/2023]
45
Koonin EV, Wolf YI. Evolution of microbes and viruses: a paradigm shift in evolutionary biology? Front Cell Infect Microbiol 2012;2:119. [PMID: 22993722 PMCID: PMC3440604 DOI: 10.3389/fcimb.2012.00119] [Citation(s) in RCA: 90] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2012] [Accepted: 08/27/2012] [Indexed: 01/21/2023]  Open
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Takeuchi N, Hogeweg P. Reply to the commentaries on “Evolutionary dynamics of RNA-like replicator systems: A bioinformatic approach to the origin of life”. Phys Life Rev 2012. [DOI: 10.1016/j.plrev.2012.07.009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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Takeuchi N, Hogeweg P. Evolutionary dynamics of RNA-like replicator systems: A bioinformatic approach to the origin of life. Phys Life Rev 2012;9:219-63. [PMID: 22727399 PMCID: PMC3466355 DOI: 10.1016/j.plrev.2012.06.001] [Citation(s) in RCA: 73] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2012] [Accepted: 06/04/2012] [Indexed: 11/29/2022]
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Hogeweg P. Toward a theory of multilevel evolution: long-term information integration shapes the mutational landscape and enhances evolvability. ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY 2012;751:195-224. [PMID: 22821460 DOI: 10.1007/978-1-4614-3567-9_10] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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