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Kiseleva OI, Ikhalaynen YA, Kurbatov IY, Arzumanian VA, Kryukova PA, Poverennaya EV. Dried Spot Paradigm: Problems and Prospects in Proteomics. Int J Mol Sci 2025; 26:3857. [PMID: 40332506 PMCID: PMC12027537 DOI: 10.3390/ijms26083857] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2025] [Revised: 03/30/2025] [Accepted: 04/16/2025] [Indexed: 05/08/2025] Open
Abstract
The analysis of biological fluids plays a crucial role in biomarker discovery, disease diagnostics, and precision medicine. Dried sample carriers-such as dried blood spots, dried plasma, serum, saliva, tears, and urine-have emerged as powerful tools, offering advantages in sample collection, storage, and transport, particularly in remote and resource-limited settings. Recent advances in proteomic methodologies have expanded the potential of these dried matrices, yet challenges related to protein stability, sensitivity, and standardization persist. This review critically examines the current state of proteomic investigations using dried biological fluids. Furthermore, we compare proteomics' progress in this field with other omics approaches, such as metabolomics, to contextualize its development and integration potential. While dried fluid proteomics is promising for non-invasive diagnostics and large-scale epidemiological studies, addressing technical limitations will be essential for its broader adoption in clinical and translational research.
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Affiliation(s)
| | | | | | | | | | - Ekaterina V. Poverennaya
- Institute of Biomedical Chemistry, Pogodinskaya Street, 10, 119121 Moscow, Russia; (O.I.K.); (Y.A.I.); (I.Y.K.); (V.A.A.); (P.A.K.)
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Morbioli GG, Baillargeon KR, Kalimashe MN, Kana V, Zwane H, van der Walt C, Tierney AJ, Mora AC, Goosen M, Jagaroo R, Brooks JC, Cutler E, Hunt G, Jordan MR, Tang A, Mace CR. Clinical evaluation of patterned dried plasma spot cards to support quantification of HIV viral load and reflexive genotyping. Proc Natl Acad Sci U S A 2025; 122:e2419160122. [PMID: 39928862 PMCID: PMC11848285 DOI: 10.1073/pnas.2419160122] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2024] [Accepted: 01/03/2025] [Indexed: 02/12/2025] Open
Abstract
Quantifying viral load, a key indicator required to achieve control and elimination of the HIV epidemic, requires cell-free plasma or serum to ensure measurements are not biased by proviral DNA contained in infected CD4 T lymphocytes. Plasma separation cards (PSC) collect and preserve a dried specimen, which makes them practical solutions for decentralized sample collection and transport in limited-resource settings. However, physiological variations in hematocrit levels can introduce significant variability in the quality of plasma generated by commercial PSCs and can lead to inaccurate test results and clinical decisions. In addition to hematocrit-dependent sampling, the Roche PSC, a standard for dried plasma collection, is known to induce considerable hemolysis, which further impacts specimen quality, concordance with liquid plasma, and the overall benefit of microsampling. We address these gaps with a patterned dried plasma spot (pDPS) card, which generates plasma with improved hematocrit independence and minimal hemolysis. This study directly compares pDPS cards to the Roche PSC to measure HIV viral load. Analysis of viral load from 75 donors revealed strong agreement in sensitivity, specificity, overall accuracy, and viral load band placement between devices, with quantitative metrics suggesting improved performance for pDPS cards. In reflexive genotyping, remnant dried blood from pDPS cards exhibited greater success than Roche PSC in amplification and sequencing (71% vs. 62%) and detecting drug resistance mutations (63% vs. 42%). Based on this performance, pDPS cards can be versatile across multiple analytical platforms, integrate seamlessly into existing clinical laboratory workflows, and aid clinicians in making accurate treatment decisions.
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Affiliation(s)
| | - Keith R. Baillargeon
- Department of Chemistry, Laboratory for Living Devices, Tufts University, Medford, MA02155
| | - Monalisa N. Kalimashe
- Center for HIV & Sexually Transmitted Infections, National Institute for Communicable Diseases, Johannesburg2192, South Africa
| | - Vibha Kana
- Center for HIV & Sexually Transmitted Infections, National Institute for Communicable Diseases, Johannesburg2192, South Africa
| | - Hloniphile Zwane
- Center for HIV & Sexually Transmitted Infections, National Institute for Communicable Diseases, Johannesburg2192, South Africa
| | - Cheri van der Walt
- Center for HIV & Sexually Transmitted Infections, National Institute for Communicable Diseases, Johannesburg2192, South Africa
| | - Allison J. Tierney
- Department of Chemistry, Laboratory for Living Devices, Tufts University, Medford, MA02155
| | - Andrea C. Mora
- Department of Chemistry, Laboratory for Living Devices, Tufts University, Medford, MA02155
| | - Mark Goosen
- Center for HIV & Sexually Transmitted Infections, National Institute for Communicable Diseases, Johannesburg2192, South Africa
| | - Rivashni Jagaroo
- Center for HIV & Sexually Transmitted Infections, National Institute for Communicable Diseases, Johannesburg2192, South Africa
| | - Jessica C. Brooks
- Department of Chemistry, Laboratory for Living Devices, Tufts University, Medford, MA02155
| | - Ewaldé Cutler
- Center for HIV & Sexually Transmitted Infections, National Institute for Communicable Diseases, Johannesburg2192, South Africa
| | - Gillian Hunt
- Bio Analytical Research Corporation South Africa, Richmond, Johannesburg2092, South Africa
| | - Michael R. Jordan
- Department of Medicine, Tufts University School of Medicine, Boston, MA02111
- Department of Public Health and Community Medicine, Tufts University School of Medicine, Boston, MA02111
| | - Alice Tang
- Department of Public Health and Community Medicine, Tufts University School of Medicine, Boston, MA02111
| | - Charles R. Mace
- Department of Chemistry, Laboratory for Living Devices, Tufts University, Medford, MA02155
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Chimoyi L, Hans L, Oladimeji M, Kindra G, Diallo K, Ayalew K, Setswe GK, Carmona S. Assessment of the performance of the plasma separation card for HIV-1 viral load monitoring in South Africa. J Clin Microbiol 2024; 62:e0164923. [PMID: 38470024 PMCID: PMC11026085 DOI: 10.1128/jcm.01649-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2023] [Accepted: 02/22/2024] [Indexed: 03/13/2024] Open
Abstract
Scaling up of newer innovations that address the limitations of the dried blood spot and the logistics of plasma monitoring is needed. We employed a multi-site, cross-sectional assessment of the plasma separation card (PSC) on blood specimens collected from all consenting adults, assenting young and pediatric patients living with HIV from 10 primary healthcare clinics in South Africa. Venous blood for EDTA-plasma samples was collected and analyzed according to the standard of care assay, while collected capillary blood for the PSC samples was analyzed using the Roche COBAS AmpliPrep/Cobas TaqMan (CAP/CTM) HIV-1 Test at the National Reference laboratories. McNemar tests assessed the differences in concordance between the centrifuged plasma and dried plasma spots. The usability of PSC by blood spotting, PSC preparation, and pre-analytical work was assessed by collecting seven-point Likert-scale data from healthcare and laboratory workers. We enrolled 538 patients, mostly adults [n = 515, 95.7% (95% CI: 93.7%-97.1%)] and females [n = 322, 64.2% (95% CI: 60.0%-68.1%)]. Overall, 536 paired samples were collected using both PSC- and EDTA-plasma diagnostics, and 502 paired PSC- and EDTA-plasma samples assessed. Concordance between the paired samples was obtained for 446 samples. Analysis of these 446 paired samples at 1,000 copies per milliliter threshold yielded an overall sensitivity of 87.5% [95% CI: 73.2%-95.8%] and specificity of 99.3% [95% CI: 97.9%-99.8%]. Laboratory staff reported technical difficulties in most tasks. The usability of the PSC by healthcare workers was favorable. For policymakers to consider PSC scale-up for viral load monitoring, technical challenges around using PSC at the clinic and laboratory level need to be addressed. IMPORTANCE Findings from this manuscript emphasize the reliability of the plasma separation card (PSC), a novel diagnostic method that can be implemented in healthcare facilities in resource-constrained settings. The agreement of the PSC with the standard of care EDTA plasma for viral load monitoring is high. Since the findings showed that these tests were highly specific, we recommend a scale-up of PSC in South Africa for diagnosis of treatment failure.
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Affiliation(s)
- Lucy Chimoyi
- Implementation Research Division, The Aurum Institute, Johannesburg, South Africa
| | - Lucia Hans
- Department of Molecular Medicine and Hematology, National Health Laboratory Service, Johannesburg, South Africa
- Department of Molecular Medicine and Hematology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa
| | - Matthew Oladimeji
- Implementation Research Division, The Aurum Institute, Johannesburg, South Africa
| | - Gurpreet Kindra
- Division of Global HIV and Tuberculosis, Center for Global Health, Centers for Disease Control and Prevention, Pretoria, South Africa
| | - Karidia Diallo
- Division of Global HIV and Tuberculosis, Center for Global Health, Centers for Disease Control and Prevention, Pretoria, South Africa
| | - Kassahun Ayalew
- Division of Global HIV and Tuberculosis, Center for Global Health, Centers for Disease Control and Prevention, Pretoria, South Africa
| | - Geoffrey K. Setswe
- Implementation Research Division, The Aurum Institute, Johannesburg, South Africa
- Department of Health Studies, University of South Africa, Pretoria, South Africa
| | - Sergio Carmona
- Department of Molecular Medicine and Hematology, National Health Laboratory Service, Johannesburg, South Africa
- Department of Molecular Medicine and Hematology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa
- Foundation for Innovative New Diagnostics (FIND), Geneva, Switzerland
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Qureshi H, Duran AC, Mahmood H, Sarwar Z, Mahmood K, Midde K, Canchola JA, Parkin NT, La Brot B. Context-dependent accuracy of the cobas plasma separation card for HCV RNA viral load measurement. J Viral Hepat 2024; 31:156-160. [PMID: 38169120 DOI: 10.1111/jvh.13910] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 09/05/2023] [Revised: 12/04/2023] [Accepted: 12/13/2023] [Indexed: 01/05/2024]
Abstract
Collection and preservation of plasma are challenging in remote or under-resourced settings. The cobas® Plasma Separation Card (PSC) is an alternative specimen type for blood-borne pathogen nucleic acid quantitation. We assessed PSC as a specimen type for HCV RNA quantitation in Pakistan. Plasma from venous blood and PSC from finger prick blood were prepared at two sites: Site 1 (in Lahore, n = 199) consisted of laboratory-based outpatient clinics. Specimens were prepared in the same facility and stored frozen. Site 2 was a catchment area within a resource-limited, semi-urban locality of Islamabad with limited access to healthcare services (n = 151). Community public health outreach staff collected blood and prepared the PSC in the participants' homes. Specimens were transported to the central hepatitis laboratory in Lahore to be stored frozen until tested. HCV RNA testing was performed using the cobas HCV RNA test in a central laboratory. Concordance with respect to RNA detectability was high at Site 1 (97.4%), but lower at Site 2 (82.4%). At Site 1, HCV viral load in plasma and PSC were well correlated across the linear range with a 0.21 log10 IU/mL mean bias toward higher concentrations in PSC. At Site 2, HCV viral load in plasma and PSC were poorly correlated. There was a 0.11 log10 IU/mL mean bias toward higher concentrations in PSC. PSC performance can be excellent in underserved settings where refrigerated transport of traditional specimens is difficult. In very challenging field settings, extra support must be provided to ensure correct specimen collection and handling.
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Affiliation(s)
| | | | - Hassan Mahmood
- Planning, Development and Monitoring Unit, Ministry of Health, Islamabad, Pakistan
| | | | - Khalid Mahmood
- Hepatitis & Infection Control Program, Punjab, Lahore, Pakistan
| | - Krishna Midde
- Roche Molecular Systems, Inc., Pleasanton, California, USA
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