Comparative mitogenomics of the assassin bug genus Peirates (Hemiptera: Reduviidae: Peiratinae) reveal conserved mitochondrial genome organization of P. atromaculatus, P. fulvescens and P. turpis

Revision of the Assassin Bug Genus Sigicoris stat. nov. Based on Morphological Study and Molecular Phylogeny (Heteroptera: Reduviidae: Peiratinae)

Peiratinae is a cosmopolitan subfamily within Reduviidae with more than 300 known species in 34 genera. There are also some taxa endemic to islands, but their taxonomic status and biology require further study. After examining type specimens of the peiratine species distributed in New Guinea, we found that some of them share many morphological characters, though they were previously assigned in different genera. The phylogenetic analysis based on cytochrome oxidase I, 16S ribosomal RNA and 18S ribosomal RNA genes involving 38 species in 25 genera also supports the result of the morphological study that these species should be involved in a separate genus. In the present study, the subgenus Ectomocoris (Sigicoris) Miller, 1958 is elevated to genus level, Sigicoris stat. nov. Three new combinations, S. brumalis comb. nov., S. gracilis comb. nov., S. sexguttatus comb. nov. and one new species, S. dominiqueae sp. nov. are described or redescribed. The lectotype of Brachysandalus sexguttatus is designated, and Pirates concinnus syn. nov. is treated as the junior synonym of S. sexguttatus comb. nov. A key is provided to separate the four species of this genus. The systematic relationships, diagnosis, distribution and habitat of Sigicoris stat. nov. are briefly discussed.

Characterization of the complete mitochondrial genome of Inara alboguttata (Hemiptera: Reduviidae)

In this study, the complete mitochondrial genome (mitogenome) of the assassin bug Inara alboguttata, is determined using next-generation sequencing. The mitogenome is a typical circular DNA molecule of 15,436 bp long with a high AT bias (72.3%), containing 13 protein-coding genes, two rRNA genes, 22 tRNA genes and a control region. Protein-coding genes all initiate with ATN codons and most of them terminate with TAA or TAG codons, whereas COI, ND3, and ND5 use a single T residue. The lrRNA and srRNA genes are 1247 bp and 766 bp in length, respectively. All tRNA genes have the cloverleaf secondary structure except for the tRNA^Ser(AGN). The control region is 860 bp long with an A + T content of 68.2%. Phylogenetic result supports the sister relationship between I. alboguttata and Acanthaspis ruficeps.

The Complete Mitochondrial Genome of the Plant Bug Lygus pratensis Linnaeus (Hemiptera: Miridae)

Lygus pratensis is a phytophagous pest responsible for yield losses in Bt alfalfa and other economic crops in Northwestern China. To better characterize Miridae at the genomic level, the complete mitochondrial (mt) genome of L. pratensis was sequenced and analyzed in this study. The mt genome was amplified via the polymerase chain reaction to generate overlapping fragments. These fragments were then sequenced, spliced, and analyzed to include the examination of nucleotide composition, codon usage, compositional biases, protein-coding genes (PCGs), and RNA secondary structures. Phylogenetic relationships between L. pratensis and other species in different Heteroptera families were also examined. The mt genome was found to be a typical circular genome with a length of 16,591 bp and a total AT content of 75.1%, encoded for 13 PCGs, 22 transfer RNAs (tRNAs), 2 ribosomal RNAs (lrRNA and srRNA), and a noncoding control region. The nucleotide composition of the entire mt genome was heavily biased toward A and T. All of the tRNAs were predicted to have classic clover leaf structures, but three of the tRNAs (tRNAAsn, tRNAHis, tRNAHis) were missing the TΨC loop. The control region (2,017 bp), which was found to be located between 12S and tRNAIle, contained three tandem repeat elements. Phylogenetic analyses showed that L. pratensis is closely related to the other three examined Lygus bugs, and that it is a sister group to Apolygus and Adelphocoris. This study confirms the usability of the mt genome in phylogenesis studies pertaining to the Lygus genus, within Miridae.

Duplication and Remolding of tRNA Genes in the Mitochondrial Genome of Reduvius tenebrosus (Hemiptera: Reduviidae)

Most assassin bugs are predators that act as important natural enemies of insect pests. Mitochondrial (mt) genomes of these insects are double-strand circular DNAs that encode 37 genes. In the present study, we explore the duplication and rearrangement of tRNA genes in the mt genome of Reduvius tenebrosus, the first mt genome from the subfamily Reduviinae. The gene order rearranges from CR (control region)-trnI-trnQ-trnM-ND2 to CR-trnQ-trnI2-trnI1-trnM-ND2. We identified 23 tRNA genes, including 22 tRNAs commonly found in insects and an additional trnI (trnI2), which has high sequence similarity to trnM. We found several pseudo genes, such as pseudo-trnI, pseudo-CR, and pseudo-ND2, in the hotspot region of gene rearrangement (between the control region and ND2). These features provided evidence that this novel gene order could be explained by the tandem duplication/random loss (TDRL) model. The tRNA duplication/anticodon mutation mechanism further explains the presence of trnI2, which is remolded from a duplicated trnM in the TDRL process (through an anticodon mutation of CAT to GAT). Our study also raises new questions as to whether the two events proceed simultaneously and if the remolded tRNA gene is fully functional. Significantly, the duplicated tRNA gene in the mitochondrial genome has evolved independently at least two times within assassin bugs.

Comparative Mitogenomics of the Genus Odontobutis (Perciformes: Gobioidei: Odontobutidae) Revealed Conserved Gene Rearrangement and High Sequence Variations

To understand the molecular evolution of mitochondrial genomes (mitogenomes) in the genus Odontobutis, the mitogenome of Odontobutis yaluensis was sequenced and compared with those of another four Odontobutis species. Our results displayed similar mitogenome features among species in genome organization, base composition, codon usage, and gene rearrangement. The identical gene rearrangement of trnS-trnL-trnH tRNA cluster observed in mitogenomes of these five closely related freshwater sleepers suggests that this unique gene order is conserved within Odontobutis. Additionally, the present gene order and the positions of associated intergenic spacers of these Odontobutis mitogenomes indicate that this unusual gene rearrangement results from tandem duplication and random loss of large-scale gene regions. Moreover, these mitogenomes exhibit a high level of sequence variation, mainly due to the differences of corresponding intergenic sequences in gene rearrangement regions and the heterogeneity of tandem repeats in the control regions. Phylogenetic analyses support Odontobutis species with shared gene rearrangement forming a monophyletic group, and the interspecific phylogenetic relationships are associated with structural differences among their mitogenomes. The present study contributes to understanding the evolutionary patterns of Odontobutidae species.

The complete mitochondrial genome of the butterfly Euripus nyctelius (Lepidoptera: Nymphalidae)

The complete mitochondrial genome (mitogenome) of the butterfly, Euripus nyctelius, was determined in the present study. The mitogenome is a typical circular DNA molecule of 15,417 bp, containing 37 genes and a putative control region. Thirteen protein-coding genes all initiate with ATN codons and mostly terminate with TAA or TAG codons except for COII, ND4 and ND5 use a single T residue as the termination codon. All tRNAs have the classic clover-leaf structure, except that the dihydrouridine (DHU) arm of tRNA(Ser(AGN)) forms a simple loop. Both maximum likelihood and Bayesian analyses support the monophyly of butterflies and recover high supports for the following family level relationships: (Papilionidae + (Hesperioidea +(Pieridae (Lycaenidae + Nymphalidae)))). Euripus nycteliusis is placed as sister to the genus Sasakia within Nymphalidae.