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Machine Learning in Bioelectrocatalysis. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2024; 11:e2306583. [PMID: 37946709 PMCID: PMC10787072 DOI: 10.1002/advs.202306583] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/12/2023] [Indexed: 11/12/2023]
Abstract
At present, the global energy crisis and environmental pollution coexist, and the demand for sustainable clean energy has been highly concerned. Bioelectrocatalysis that combines the benefits of biocatalysis and electrocatalysis produces high-value chemicals, clean biofuel, and biodegradable new materials. It has been applied in biosensors, biofuel cells, and bioelectrosynthesis. However, there are certain flaws in the application process of bioelectrocatalysis, such as low accuracy/efficiency, poor stability, and limited experimental conditions. These issues can possibly be solved using machine learning (ML) in recent reports although the combination of them is still not mature. To summarize the progress of ML in bioelectrocatalysis, this paper first introduces the modeling process of ML, then focuses on the reports of ML in bioelectrocatalysis, and ultimately makes a summary and outlook about current issues and future directions. It is believed that there is plenty of scope for this interdisciplinary research direction.
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Potential of nitrite-absent anaerobic ammonium oxidation by mixed culture ANAMMOX granules in a single chamber bio-electrochemical system. CHEMOSPHERE 2023; 345:140494. [PMID: 37863210 DOI: 10.1016/j.chemosphere.2023.140494] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/26/2023] [Revised: 09/18/2023] [Accepted: 10/18/2023] [Indexed: 10/22/2023]
Abstract
Nitrogen (N) removal from wastewater is essential, but it a process that demands a substantial amount of energy. Therefore, there is an urgent need to develop treatment processes that can conserve and use energy effectively. This study investigated the potential of a single chamber bio-electrochemical system (BES) for ammonium (NH4+) removal. Various NH4+:NO2- ratios (1:1, 1:0.5, and 1:0) were tested at an applied potential of 0.4 V vs. Ag/AgCl. Potential in the reactors (R-1, R-2, and R-3) significantly improved NH4+ removal efficiencies. Specifically, R-1, R-2, and R-3 exhibited removal efficiencies of 68.12%, 64.22%, and 57.86%, respectively. NH4+ oxidation in R-3 involved using a carbon brush electrode as an electron acceptor. Significant electric charge generation was observed in all reactors (R-1, R-2, and R-3) during NH4+ removal. Particularly, the use of a carbon brush as an electron acceptor in R-3 resulted in higher electric charge generation compared to those in R-1 and R-2, where NO2- served as an electron acceptor. Upon NH4+ removal and concurrent electric charge generation, nitrate (NO3-) accumulation was observed in reactors with applied potential (R-1, R-2, and R-3), demonstrating greater accumulation compared to reactors without potential (R-7, R-8, and R-9). The mechanism involves ammonium oxidizing bacteria (AOB) oxidizing NH4+ to NO2-, which is then further oxidized by nitrite-oxidizing bacteria (NOB) to NO3-. ANAMMOX bacteria could directly produce N2 from NH4+ and NO2- or NH4+ could be oxidized to N2 through extracellular electron transfer (EET). A carbon brush electron acceptor reduces NO2- requirement by 1.65 g while enhancing NH4+ oxidation efficiency. This study demonstrates the potential of mixed culture ANAMMOX granules for efficient NO2-free NH4+ removal.
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Biodegradation of human faecal sludge for photosynthetic bioelectricity generation and seawater desalination in a microbial desalination cell. ENVIRONMENTAL TECHNOLOGY 2023:1-13. [PMID: 37965746 DOI: 10.1080/09593330.2023.2283406] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/18/2023] [Accepted: 10/02/2023] [Indexed: 11/16/2023]
Abstract
ABSTRACTInaccessibility and expensiveness of vital infrastructures are the main problems in some urban and rural areas to supply fresh water, sustainable energy, and wastewater treatment. An effective solution is the integration of several systems in an environmentally friendly technology of the photosynthetic microbial desalination cell (PMDC). The aim of this study is to assess the process characterisation of an algae-based PMDC, which was loaded with a high-strength mixture of human feces and urine (HFS). The PMDC was also able to efficiently remove COD and total nitrogen of HFS by 50% and 94%, respectively. The maximum power density, voltage, and desalination efficiency of 362.5 mW/m², 175.2 mV, and 60% were accomplished. Adequate parameter adjustment led to a remarkable maximum of 2.25 g/L.d in the ion removal rate. In addition, an energy balance was governed showing that zero or positive net energy in PMDC is feasible by replacing the main energy consumers. Based on the results, this type of MDC had a high efficiency for simultaneous saline water desalination and HFS treatment, which makes it attractive for further studies of upscaling and its application in remote areas.
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The in-depth revelation of the mechanism by which a downflow Leersia hexandra Swartz constructed wetland-microbial fuel cell synchronously removes Cr(VI) and p-chlorophenol and generates electricity. ENVIRONMENTAL RESEARCH 2023; 216:114451. [PMID: 36183789 DOI: 10.1016/j.envres.2022.114451] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/26/2022] [Revised: 09/19/2022] [Accepted: 09/25/2022] [Indexed: 06/16/2023]
Abstract
The composite pollution by Cr(VI) and p-chlorophenol (4-CP) has high toxicity and harms water safety. However, research on the effective removal of Cr(VI) and 4-CP composite-polluted wastewater (C&P) and efficient synchronous electricity generation with reclaimed resources is limited. In this study, a downflow Leersia hexandra constructed wetland-microbial fuel cell (DLCW-MFC) was builded to treat C&P, as well as wastewater singularly polluted by Cr(VI) (SC) and 4-CP (SP), respectively, to reveal the mechanism by which DLCW-MFC treats C&P and synchronously generates electricity. The results demonstrate that the cathode layer had a stronger removal effect on pollutants than the middle layer and anode zone layer. Moreover, SC and SP had stronger pollutant removal effects than C&P. Cr(VI) had more competitive with electrons than 4-CP, and they had a synergistic effect on efficient electricity generation. The L.hexandra in SC and SP had a better growth state and lower Cr enrichment concentration than that in C&P. Cr existed in the DLCW-MFC mainly in the form of Cr(III). Gas chromatography-mass spectrometry was used to investigate the degradation pathway of 4-CP in C&P, and indicated that Phenol, 2,4-bis(1,1-dimethylethyl)- and benzoic acid compounds were the main intermediates formed at the cathode, and further mineralized to form medium-long-chain organic compounds to form CO2. The microbial community distribution results revealed that Simplicispira, Cloacibacterium, and Rhizobium are associated with Cr(VI) removal and 4-CP degradation, and were found to be rich in the cathode of C&P. The anode of C&P was found to have more Acinetobacter (1.34%) and Spirochaeta (4.83%) than SC and SP, and the total relative abundance of electricigens at the anode of C&P (7.46%) was higher than that at the anodes of SC and SP. This study can provide a theoretical foundation for the DLCW-MFC to treat heavy metal and chlorophenol composite-polluted wastewater and synchronously generate electricity.
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Recent progress in microbial fuel cells using substrates from diverse sources. Heliyon 2022; 8:e12353. [PMID: 36582703 PMCID: PMC9792797 DOI: 10.1016/j.heliyon.2022.e12353] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2022] [Revised: 11/09/2022] [Accepted: 12/07/2022] [Indexed: 12/23/2022] Open
Abstract
Increasing untreated environmental outputs from industry and the rising human population have increased the burden of wastewater and other waste streams on the environment. The most prevalent wastewater treatment methods include the activated sludge process, which requires aeration and is, therefore, energy and cost-intensive. The current trend towards a circular economy facilitates the recovery of waste materials as a resource. Along with the amount, the complexity of wastewater is increasing day by day. Therefore, wastewater treatment processes must be transformed into cost-effective and sustainable methods. Microbial fuel cells (MFCs) use electroactive microbes to extract chemical energy from waste organic molecules to generate electricity via waste treatment. This review focuses use of MFCs as an energy converter using wastewater from various sources. The different substrate sources that are evaluated include industrial, agricultural, domestic, and pharmaceutical types. The article also highlights the effect of operational parameters such as organic load, pH, current, and concentration on the MFC output. The article also covers MFC functioning with respect to the substrate, and the associated performance parameters, such as power generation and wastewater treatment matrices, are given. The review also illustrates the success stories of various MFC configurations. We emphasize the significant measures required to fill in the gaps related to the effect of substrate type on different MFC configurations, identification of microbes for use as biocatalysts, and development of biocathodes for the further improvement of the system. Finally, we shortlisted the best performing substrates based on the maximum current and power, Coulombic efficiency, and chemical oxygen demand removal upon the treatment of substrates in MFCs. This information will guide industries that wish to use MFC technology to treat generated effluent from various processes.
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Effects of pH Adjustment on the Release of Carbon Source of Particulate Organic Matter (POM) in Domestic Sewage. SUSTAINABILITY 2022. [DOI: 10.3390/su14137746] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
The use of anaerobic hydrolytic fermentation to develop more available carbon sources from domestic sewage influent particulate organic matter (POM) has received increasing attention. However, the slow hydrolysis rate of POM limits the application of this technology. This study aimed to improve the carbon source release efficiency of POM by pH adjustment and to reveal the hydrolysis mechanism. Results showed that adjusting the initial pH of POM to 3, 9, and 11 enhanced carbon source release in the anaerobic hydrolysis fermentation process of POM. The pretreatment under pH value of 11 contributed to the highest yield and productivity of carbon source, reaching the soluble chemical oxygen demand (SCOD) of 2782 mg/L at the 4th day. The pH 3 pretreatment was more beneficial for phosphorus resource recovery, which contributed to the highest release concentration of PO43−-P, reaching 48.2 mg/L at the 3rd day, accounting for 90% of TP. Microbial community structure analysis indicated that pH 11 preconditioning promoted the enrichment of proteolytic bacteria (Proteocatella and Proteiniclasticum) and polysaccharide hydrolytic bacteria (Trichococcus and Acinetobacter) and inhibited the growth of acetate-consuming methanogenic archaea, which contributed to the highest carbon release of POM in domestic sewage.
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Sustainable strategy on microbial fuel cell to treat the wastewater for the production of green energy. CHEMOSPHERE 2022; 290:133295. [PMID: 34914952 DOI: 10.1016/j.chemosphere.2021.133295] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/19/2021] [Revised: 12/07/2021] [Accepted: 12/11/2021] [Indexed: 06/14/2023]
Abstract
Microbial fuel cell (MFC) is one of the promising alternative energy systems where the catalytic conversion of chemical energy into electrical energy takes places with the help of microorganisms. The basic configuration of MFC consists of three major components such as electrodes (anode and cathode), catalyst (microorganism) and proton transport/exchange membrane (PEM). MFC classified into four types based on the substrate utilized for the catalytic energy conversion process such as Liquid-phase MFC, Solid-phase MFC, Plant-MFC and Algae-MFC. The core performance of MFC is organic substrate oxidation and electron transfer. Microorganisms and electrodes are the key factors that decide the efficiency of MFC system for electricity generation. Microorganism catalysis degradation of organic matters and assist the electron transfer to anode surface, the conductivity of anode material decides the rate of electron transport to cathode through external circuit where electrons are reduced with hydrogen and form water with oxygen. Not limited to electricity generation, MFC also has diverse applications in different sectors including wastewater treatment, biofuel (biohydrogen) production and used as biosensor for detection of biological oxygen demand (BOD) of wastewater and different contaminants concentration in water. This review explains different types of MFC systems and their core performance towards energy conversion and waste management. Also provides an insight on different factors that significantly affect the MFC performance and different aspects of application of MFC systems in various sectors. The challenges of MFC system design, operations and implementation in pilot scale level and the direction for future research are also described in the present review.
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Bacterial Competition for the Anode Colonization under Different External Resistances in Microbial Fuel Cells. Catalysts 2022. [DOI: 10.3390/catal12020176] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023] Open
Abstract
This study investigated the effect of external resistance (Rext) on the dynamic evolution of microbial communities in anodic biofilms of single-chamber microbial fuel cells fueled with acetate and inoculated with municipal wastewater. Anodic biofilms developed under different Rext (0, 330 and 1000 ohms, and open circuit condition) were characterized as a function of time during two weeks of growth using 16S rRNA gene sequencing, cyclic voltammetry (CV) and fluorescence microscopy. The results showed a drastic difference in power output of MFCs operated with an open circuit and those operated with Rext from 0 to 1000 ohms. Two steps during the bacterial community development of the anodic biofilms were identified. During the first four days, nonspecific electroactive bacteria (non-specific EAB), dominated by Pseudomonas, Acinetobacter, and Comamonas, grew fast whatever the value of Rext. During the second step, specific EAB, dominated by Geobacter and Desulfuromonas, took over and increased over time, except in open circuit MFCs. The relative abundance of specific EAB decreased with increasing Rext. In addition, the richness and diversity of the microbial community in the anodic biofilms decreased with decreasing Rext. These results help one to understand the bacterial competition during biofilm formation and suggest that an inhibition of the attachment of non-specific electroactive bacteria to the anode surface during the first step of biofilm formation should improve electricity production.
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Response surface optimization of microalgae microbial fuel cell (MMFC) enhanced by yeast immobilization for bioelectricity production. CHEMOSPHERE 2022; 287:132275. [PMID: 34582932 DOI: 10.1016/j.chemosphere.2021.132275] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/25/2021] [Revised: 09/08/2021] [Accepted: 09/16/2021] [Indexed: 06/13/2023]
Abstract
In this work, suspended and immobilized Saccharomyces cerevisiae yeast in alginate was utilized as a biocatalyst to interact with different concentrations of tofu wastewater for microalgae microbial fuel cell (MMFC) application. Operating conditions are one of the factors that impact the MMFC's performance, thus they must be optimized. The response surface approach was used to optimize operating conditions, which involved CCD-randomized by five levels of two variables. With an average voltage of 0.13 V, power density of 13.94 mW·m-2, and current density of 102.20 mA·m-2, bioelectricity output produced more suspended yeast than immobilized yeast. The average voltage of MMFC with immobilized yeast was 0.123 V, the power density was 11.25 mW·m-2, and the current density was 91.82 mA·m-2. Immobilized yeast, on the other hand, led in faster stabilization of the resulted electrical output. When compared to suspension yeast, immobilized yeast removed more COD. The best conditions were reached with a yeast concentration of 10.89% w/v and a wastewater concentration of 56.94%, resulting in a power density and COD removal of 11.25 mW·m-2 and 31.82%, respectively. The effect of yeast and wastewater concentrations on power density and COD removal revealed that the model was well supported by experimental results.
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nZVI Impacts Substrate Conversion and Microbiome Composition in Chain Elongation From D- and L-Lactate Substrates. Front Bioeng Biotechnol 2021; 9:666582. [PMID: 34211964 PMCID: PMC8239352 DOI: 10.3389/fbioe.2021.666582] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2021] [Accepted: 05/25/2021] [Indexed: 12/12/2022] Open
Abstract
Medium-chain carboxylates (MCC) derived from biomass biorefining are attractive biochemicals to uncouple the production of a wide array of products from the use of non-renewable sources. Biological conversion of biomass-derived lactate during secondary fermentation can be steered to produce a variety of MCC through chain elongation. We explored the effects of zero-valent iron nanoparticles (nZVI) and lactate enantiomers on substrate consumption, product formation and microbiome composition in batch lactate-based chain elongation. In abiotic tests, nZVI supported chemical hydrolysis of lactate oligomers present in concentrated lactic acid. In fermentation experiments, nZVI created favorable conditions for either chain-elongating or propionate-producing microbiomes in a dose-dependent manner. Improved lactate conversion rates and n-caproate production were promoted at 0.5-2 g nZVI⋅L-1 while propionate formation became relevant at ≥ 3.5 g nZVI⋅L-1. Even-chain carboxylates (n-butyrate) were produced when using enantiopure and racemic lactate with lactate conversion rates increased in nZVI presence (1 g⋅L-1). Consumption of hydrogen and carbon dioxide was observed late in the incubations and correlated with acetate formation or substrate conversion to elongated products in the presence of nZVI. Lactate racemization was observed during chain elongation while isomerization to D-lactate was detected during propionate formation. Clostridium luticellarii, Caproiciproducens, and Ruminococcaceae related species were associated with n-valerate and n-caproate production while propionate was likely produced through the acrylate pathway by Clostridium novyi. The enrichment of different potential n-butyrate producers (Clostridium tyrobutyricum, Lachnospiraceae, Oscillibacter, Sedimentibacter) was affected by nZVI presence and concentrations. Possible theories and mechanisms underlying the effects of nZVI on substrate conversion and microbiome composition are discussed. An outlook is provided to integrate (bio)electrochemical systems to recycle (n)ZVI and provide an alternative reducing power agent as durable control method.
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Electro-bioremediation of nitrate and arsenite polluted groundwater. WATER RESEARCH 2021; 190:116748. [PMID: 33360100 DOI: 10.1016/j.watres.2020.116748] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/02/2020] [Revised: 12/07/2020] [Accepted: 12/12/2020] [Indexed: 06/12/2023]
Abstract
The coexistence of different pollutants in groundwater is a common threat. Sustainable and resilient technologies are required for their treatment. The present study aims to evaluate microbial electrochemical technologies (METs) for treating groundwater contaminated with nitrate (NO3-) while containing arsenic (in form of arsenite (As(III)) as a co-contaminant. The treatment was based on the combination of nitrate reduction to dinitrogen gas and arsenite oxidation to arsenate (exhibiting less toxicity, solubility, and mobility), which can be removed more easily in further post-treatment. We operated a bioelectrochemical reactor at continuous-flow mode with synthetic contaminated groundwater (33 mg N-NO3- L-1 and 5 mg As(III) L-1) identifying the key operational conditions. Different hydraulic retention times (HRT) were evaluated, reaching a maximum nitrate reduction rate of 519 g N-NO3- m3Net Cathodic Compartment d-1 at HRT of 2.3 h with a cathodic coulombic efficiency of around 100 %. Simultaneously, arsenic oxidation was complete at all HRT tested down to 1.6 h reaching an oxidation rate of up to 90 g As(III) m-3Net Reactor Volume d -1. Electrochemical and microbiological characterization of single granules suggested that arsenite at 5 mg L-1 did not have an inhibitory effect on a denitrifying biocathode mainly represented by Sideroxydans sp. Although the coexistence of abiotic and biotic arsenic oxidation pathways was shown to be likely, microbial arsenite oxidation linked to denitrification by Achromobacter sp. was the most probable pathway. This research paves the ground towards a real application for treating groundwater with widespread pollutants.
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The influential role of external electrical load in microbial fuel cells and related improvement strategies: A review. Bioelectrochemistry 2021; 140:107749. [PMID: 33549971 DOI: 10.1016/j.bioelechem.2021.107749] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2020] [Revised: 01/04/2021] [Accepted: 01/21/2021] [Indexed: 12/28/2022]
Abstract
The scope of the currentreviewis to discuss and evaluate the role of the external electrical load/resistor (EEL) on the overall behavior and functional properties of microbial fuel cells (MFCs). In this work, a comprehensive analysis is made by considering various levels of MFC architecture, such as electric and energy harvesting efficiency, anode electrode potential shifts, electro-active biofilm formation, cell metabolism and extracellular electron transfer mechanisms, as a function of the EEL and its control strategies. It is outlined that taking the regulation of EEL into account at MFC optimization is highly beneficial, and in order to support this step, in this review, a variety of guidelines are collected and analyzed.
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Anoxic-biocathode microbial desalination cell as a new approach for wastewater remediation and clean water production. WATER SCIENCE AND TECHNOLOGY : A JOURNAL OF THE INTERNATIONAL ASSOCIATION ON WATER POLLUTION RESEARCH 2020; 81:550-563. [PMID: 32385209 DOI: 10.2166/wst.2020.134] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Bioelectrochemical systems are emerging as a promising and friendly alternative to convert the energy stored in wastewater directly into electricity by microorganisms and utilize it in situ to drive desalination. To better understand such processes, we propose the development of an anoxic biocathode microbial desalination Cell for the conversion of carbon- and nitrogen-rich wastewaters into bioenergy and to perform salt removal. Our results demonstrate a power output of 0.425 W m-3 with desalination, organic matter removal and nitrate conversion efficiencies of 43.69, 99.85 and 92.11% respectively. Microbiological analysis revealed Proteobacteria as the dominant phylum in the anode (88.45%) and biocathode (97.13%). While a relatively higher bacterial abundance was developed in the anode chamber, the biocathode showed a greater variety of microorganisms, with a predominance of Paracoccus (73.2%), which are related to the denitrification process. These findings are promising and provide new opportunities for the development and application of this technology in the field of wastewater treatment to produce cleaner water and conserve natural resources.
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Incorporating microbial community data with machine learning techniques to predict feed substrates in microbial fuel cells. Biosens Bioelectron 2019; 133:64-71. [PMID: 30909014 DOI: 10.1016/j.bios.2019.03.021] [Citation(s) in RCA: 34] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2018] [Revised: 03/11/2019] [Accepted: 03/12/2019] [Indexed: 12/21/2022]
Abstract
The complicated interactions that occur in mixed-species biotechnologies, including biosensors, hinder chemical detection specificity. This lack of specificity limits applications in which biosensors may be deployed, such as those where an unknown feed substrate must be determined. The application of genomic data and well-developed data mining technologies can overcome these limitations and advance engineering development. In the present study, 69 samples with three different substrate types (acetate, carbohydrates and wastewater) collected from various laboratory environments were evaluated to determine the ability to identify feed substrates from the resultant microbial communities. Six machine learning algorithms with four different input variables were trained and evaluated on their ability to predict feed substrate from genomic datasets. The highest accuracies of 93 ± 6% and 92 ± 5% were obtained using NNET trained on datasets classified at the phylum and family taxonomic level, respectively. These accuracies corresponded to kappa values of 0.87 ± 0.10, 0.86 ± 0.09, respectively. Four out of six of the algorithms used maintained accuracies above 80% and kappa values higher than 0.66. Different sequencing method (Roche 454 or Illumina sequencing) did not affect the accuracies of all algorithms, except SVM at the phylum level. All algorithms trained on NMDS-compressed datasets obtained accuracies over 80%, while models trained on PCoA-compressed datasets presented a 10-30% reduction in accuracy. These results suggest that incorporating microbial community data with machine learning algorithms can be used for the prediction of feed substrate and for the potential improvement of MFC-based biosensor signal specificity, providing a new use of machine learning techniques that has substantial practical applications in biotechnological fields.
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Graphene Facilitates Biomethane Production from Protein-Derived Glycine in Anaerobic Digestion. iScience 2018; 10:158-170. [PMID: 30528903 PMCID: PMC6282454 DOI: 10.1016/j.isci.2018.11.030] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2018] [Revised: 11/06/2018] [Accepted: 11/16/2018] [Indexed: 11/05/2022] Open
Abstract
Interspecies electron transfer is a fundamental factor determining the efficiency of anaerobic digestion (AD), which involves syntrophy between fermentative bacteria and methanogens. Direct interspecies electron transfer (DIET) induced by conductive materials can optimize this process offering a significant improvement over indirect electron transfer. Herein, conductive graphene was applied in the AD of protein-derived glycine to establish DIET. The electron-producing reaction via DIET is thermodynamically more favorable and exhibits a more negative Gibbs free energy value (−60.0 kJ/mol) than indirect hydrogen transfer (−33.4 kJ/mol). The Gompertz model indicated that the kinetic parameters exhibited linear correlations with graphene addition from 0.25 to 1.0 g/L, leading to the highest increase in peak biomethane production rate of 28%. Sedimentibacter (7.8% in abundance) and archaea Methanobacterium (71.1%) and Methanosarcina (11.3%) might be responsible for DIET. This research can open up DIET to a range of protein-rich substrates, such as algae. Graphene led to an increase in peak bio-CH4 production rate from glycine by 28% Kinetic parameters had linear correlations with graphene addition (0.25–1.0 g/L) Direct interspecies electron transfer (DIET) contributed to the improved performance
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Redox-gradient driven electron transport in a mixed community anodic biofilm. FEMS Microbiol Ecol 2018; 94:4990946. [DOI: 10.1093/femsec/fiy081] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2018] [Accepted: 05/01/2018] [Indexed: 11/13/2022] Open
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A study of microbial communities on terracotta separator and on biocathode of air breathing microbial fuel cells. Bioelectrochemistry 2018; 120:18-26. [DOI: 10.1016/j.bioelechem.2017.11.005] [Citation(s) in RCA: 38] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2017] [Revised: 11/10/2017] [Accepted: 11/10/2017] [Indexed: 11/16/2022]
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