Phylogeny and chromosomal diversification in the Dichroplus elongatus species group (Orthoptera, Melanoplinae)

Evolution of chromosome number in grasshoppers (Orthoptera: Caelifera: Acrididae)

Orthoptera have some of the largest genomes of all insects. At the same time, the architecture of their genomes remains poorly understood. Comparative cytological data across a wide range of taxa, even for basic parameters such as chromosome number, may provide important insights into the evolution of these genomes and help answer the question of why some species attained such large sizes. We collected and compiled more than 1,000 records of chromosome numbers of 339 genera (13.8% of 2,452 known genera) and 769 species (6.2% of 12,250 known species) of Caelifera, the suborder of Orthoptera that includes those taxa with short antennae. Within the family Acrididae, most of the records come from the subfamilies Oedipodinae (N = 325), Melanoplinae (N = 192) and Gomphocerinae (N = 254). Out of the 621 investigated species of Acrididae, 459 (73.9%) shared a chromosome number of 2n♂ = 23. Chromosome numbers of 2n♂ = 17 (12.2%) and 2n♂ = 21 (9.9%) were less common. The remaining 4.0% of species exhibited different chromosome numbers between 2n♂ = 8 (6 + XY) and 2n♂ = 27. Plotted on a phylogenetic tree, our results confirm that chromosome numbers, especially in the largest grasshopper family Acrididae, are highly conserved with a basic count of 2n♂ = 23 (22 + X0), sometimes reduced to, e.g., 2n♂ = 17 (16 + X0) in some genera of the slant-faced grasshopper subfamily Gomphocerinae. Species with divergent chromosome numbers occur in many of the groups we studied, but are not a systematic trait and have evolved multiple times independently. Our study supports the view that chromosome numbers are much more stable across the investigated Caelifera compared to Ensifera, the second suborder of Orthoptera that includes the long antennae bush crickets and crickets. Our results significantly extend our knowledge on the diversity of this character in Caelifera.

New insights into the six decades of Mesa’s hypothesis of chromosomal evolution in Ommexechinae grasshoppers (Orthoptera: Acridoidea)

In Acridoidea grasshoppers, chromosomal rearrangements are frequently found as deviations from the standard acrocentric karyotype (2n = 23♂/24♀, FN = 23♂/24♀) in either phylogenetically unrelated species or shared by closely related ones, i.e. genus. In the South American subfamily Ommexechinae, most of the species show a unique karyotype (2n = 23♂/24♀, FN = 25♂/26♀) owing to the occurrence of a large autosomal pair (L1) with submetacentric morphology. In the early 1960s, Alejo Mesa proposed the hypothesis of an ancestral pericentric inversion to explain this karyotype variation. Furthermore, in Ommexechinae, extra chromosomal rearrangements (e.g. centric fusions) are recorded between the ancestral X chromosome and autosomes that originated the so-called neo-sex chromosomes. However, the evolutionary significance of the pericentric inversions and centric fusions in Ommexechinae remains poorly explored. Aiming for a better understanding of chromosomal evolution in Ommexechinae, we performed a detailed cytogenetic analysis in five species. Our findings support the hypothesis about the occurrence of an early pericentric inversion in the ancestor of Ommexechinae. Moreover, our results show a complex karyotype diversification pattern due to several chromosome rearrangements, variations in heterochromatin and repetitive DNA dynamics. Finally, the chromosomal mapping of U2 snDNA in L1 provided new insights about the morphological evolution of this autosomal pair and revealed unnoticed chromosome reorganizations.

Cytogenomic analysis unveils mixed molecular evolution and recurrent chromosomal rearrangements shaping the multigene families on Schistocerca grasshopper genomes

Multigene families are essential components of eukaryotic genomes and play key roles either structurally and functionally. Their modes of evolution remain elusive even in the era of genomics, because multiple multigene family sequences coexist in genomes, particularly in large repetitive genomes. Here, we investigate how the multigene families 18S rDNA, U2 snDNA, and H3 histone evolved in 10 species of Schistocerca grasshoppers with very large and repeat-enriched genomes. Using sequenced genomes and fluorescence in situ hybridization mapping, we find substantial differences between species, including the number of chromosomal clusters, changes in sequence abundance and nucleotide composition, pseudogenization, and association with transposable elements (TEs). The intragenomic analysis of Schistocerca gregaria using long-read sequencing and genome assembly unveils conservation for H3 histone and recurrent pseudogenization for 18S rDNA and U2 snDNA, likely promoted by association with TEs and sequence truncation. Remarkably, TEs were frequently associated with truncated copies, were also among the most abundant in the genome, and revealed signatures of recent activity. Our findings suggest a combined effect of concerted and birth-and-death models driving the evolution of multigene families in Schistocerca over the last 8 million years, and the occurrence of intra- and interchromosomal rearrangements shaping their chromosomal distribution. Despite the conserved karyotype in Schistocerca, our analysis highlights the extensive reorganization of repetitive DNAs in Schistocerca, contributing to the advance of comparative genomics for this important grasshopper genus.