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López-González M, Piquet JC, Maestresalas B, López-Darias M. Validation of eDNA methods for managing the terrestrial invasive snake Lampropeltis californiae on the Canary Islands. Sci Rep 2025; 15:14116. [PMID: 40269028 PMCID: PMC12018960 DOI: 10.1038/s41598-025-96387-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2024] [Accepted: 03/27/2025] [Indexed: 04/25/2025] Open
Abstract
Invasive snakes are among the most challenging invaders worldwide due to their exceptionally low detection rate and grave ecological impacts. Environmental DNA (eDNA) has emerged as a promising tool to improve invasive snake detection and enhancing management programs, yet its application to terrestrial snakes remains underexplored. This study provides the first advances in the use of eDNA techniques to detect the terrestrial invasive California kingsnake (Lampropeltis californiae). We designed L. californiae-specific primers and tested their effectiveness in detecting the species in different environmental samples, including swab samples from underneath artificial cover objects (ACOs) made of different materials, soil beneath ACOs, randomly collected soil, and researchers' boots. Additionally, we conducted a controlled experiment to assess the accumulation and degradation rate of L. californiae eDNA over a 14-day period (7 with snakes in the terraria and 7 after having removed them). We detected L. californiae eDNA in 9.31% of swab samples, in 2.22% of soil samples under ACOs, and in 2.56% of boot samples, while no detections appeared in randomly collected soil or controls. In the controlled experiment, eDNA was undetectable in terraria prior snake introductions, but remained detectable throughout the study, with no evidence of snake eDNA degradation after snake removal. These findings provide key insights for the implementation of an eDNA-based protocol for the detection of L. californiae in Gran Canaria, offering a valuable tool for monitoring this invasive species. Furthermore, this study could be used for refining eDNA methodologies to detect other elusive terrestrial snake species elsewhere.
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Affiliation(s)
- Mercedes López-González
- Spanish National Research Council (CSIC), Av. Astrofísico Fco. Sánchez, 3, San Cristóbal de La Laguna, 38206, Tenerife, Canary Islands, Spain
| | - Julien C Piquet
- Spanish National Research Council (CSIC), Av. Astrofísico Fco. Sánchez, 3, San Cristóbal de La Laguna, 38206, Tenerife, Canary Islands, Spain
| | - Borja Maestresalas
- Spanish National Research Council (CSIC), Av. Astrofísico Fco. Sánchez, 3, San Cristóbal de La Laguna, 38206, Tenerife, Canary Islands, Spain
| | - Marta López-Darias
- Spanish National Research Council (CSIC), Av. Astrofísico Fco. Sánchez, 3, San Cristóbal de La Laguna, 38206, Tenerife, Canary Islands, Spain.
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Guzy JC, Falk BG, Smith BJ, Willson JD, Reed RN, Aumen NG, Avery ML, Bartoszek IA, Campbell E, Cherkiss MS, Claunch NM, Currylow AF, Dean T, Dixon J, Engeman R, Funck S, Gibble R, Hengstebeck KC, Humphrey JS, Hunter ME, Josimovich JM, Ketterlin J, Kirkland M, Mazzotti FJ, McCleery R, Miller MA, McCollister M, Parker MR, Pittman SE, Rochford M, Romagosa C, Roybal A, Snow RW, Spencer MM, Waddle JH, Yackel Adams AA, Hart KM. Burmese pythons in Florida: A synthesis of biology, impacts, and management tools. NEOBIOTA 2023. [DOI: 10.3897/neobiota.80.90439] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Abstract
Burmese pythons (Python molurus bivittatus) are native to southeastern Asia, however, there is an established invasive population inhabiting much of southern Florida throughout the Greater Everglades Ecosystem. Pythons have severely impacted native species and ecosystems in Florida and represent one of the most intractable invasive-species management issues across the globe. The difficulty stems from a unique combination of inaccessible habitat and the cryptic and resilient nature of pythons that thrive in the subtropical environment of southern Florida, rendering them extremely challenging to detect. Here we provide a comprehensive review and synthesis of the science relevant to managing invasive Burmese pythons. We describe existing control tools and review challenges to productive research, identifying key knowledge gaps that would improve future research and decision making for python control.
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Delgado R. Detecting target species: with how many samples? ROYAL SOCIETY OPEN SCIENCE 2022; 9:220046. [PMID: 35958088 PMCID: PMC9364006 DOI: 10.1098/rsos.220046] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/12/2022] [Accepted: 07/20/2022] [Indexed: 06/15/2023]
Abstract
The detection of target species is of paramount importance in ecological studies, with implications for environmental management and natural resource conservation planning. This is usually done by sampling the area: the species is detected if the presence of at least one individual is detected in the samples. Green & Young (Green & Young 1993 Sampling to detectrare species. Ecol. Appl. 3, 351-356. (doi:10.2307/1941837) introduce two models to determine the minimum number of samples n to ensure that the probability of failing to detect the species from them, if the species is actually present in the area, does not exceed a fixed threshold: based on the Poisson and the Negative Binomial distributions. We generalize them to two scenarios, one considering the area size N to be finite, and the other allowing detectability errors, with probability δ. The results in Green & Young are recovered by taking N → ∞ and δ = 0. Not taking into consideration the finite size of the area, if known, leads to an overestimation of n, which is vital to avoid if sampling is expensive or difficult, while assuming that there are no detectability errors, if they really exist, produces an undesirable bias. Our approximation manages to skirt both problems, for the Poisson and the Negative Binomial.
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Affiliation(s)
- Rosario Delgado
- Department of Mathematics, Universitat Autònoma de Barcelona, Campus de la UAB, Cerdanyola del Vallès 08193, Spain
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Boback SM, Nafus MG, Yackel Adams AA, Reed RN. Invasive brown treesnakes (Boiga irregularis) move short distances and have small activity areas in a high prey environment. Sci Rep 2022; 12:12705. [PMID: 35882893 PMCID: PMC9325984 DOI: 10.1038/s41598-022-16660-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2021] [Accepted: 07/13/2022] [Indexed: 11/09/2022] Open
Abstract
Animal movements reflect temporal and spatial availability of resources as well as when, where, and how individuals access such resources. To test these relationships for a predatory reptile, we quantified the effects of prey abundance on the spatial ecology of invasive brown treesnakes (Boiga irregularis) on Guam. Five months after toxicant-mediated suppression of a brown treesnake population, we simultaneously used visual encounter surveys to generate relative rodent abundance and radiotelemetry of snakes to document movements of surviving snakes. After snake suppression, encounter rates for small mammals increased 22-fold and brown treesnakes had smaller mean daily movement distances (24 ± 13 m/day, [Formula: see text] ± SD) and activity areas (5.47 ± 5 ha) than all previous observations. Additionally, snakes frequenting forest edges, where our small mammal encounters were the highest, had smaller mean daily movement distances and three-dimensional activity volumes compared to those within the forest interior. Collectively, these results suggest that reduced movements by snakes were in part a response to increased prey availability. The impact of prey availability on snake movement may be a management consideration when attempting to control cryptic invasive species using tools that rely on movement of the target species to be effective.
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Affiliation(s)
- Scott M Boback
- Department of Biology, Dickinson College, Carlisle, PA, USA.
| | - Melia G Nafus
- Fort Collins Science Center, U.S. Geological Survey, Fort Collins, CO, USA
| | - Amy A Yackel Adams
- Fort Collins Science Center, U.S. Geological Survey, Fort Collins, CO, USA
| | - Robert N Reed
- Fort Collins Science Center, U.S. Geological Survey, Fort Collins, CO, USA.,Pacific Island Ecosystems Research Center, U.S. Geological Survey, Hawaii National Park, HI, USA
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Amburgey SM, Yackel Adams AA, Gardner B, Lardner B, Knox AJ, Converse SJ. Tools for increasing visual encounter probabilities for invasive species removal: a case study of brown treesnakes. NEOBIOTA 2021. [DOI: 10.3897/neobiota.70.71379] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
Early detection and rapid response (EDRR) are essential to identifying and decisively responding to the introduction or spread of an invasive species, thus avoiding population establishment and improving the probability of achieving eradication. However, detection can be challenging at the onset of a species invasion as low population densities can reduce the likelihood of detection and conceal the true extent of the situation until the species is well established. This is doubly challenging if the invading species displays cryptic behavior or is nocturnal, thus further limiting opportunities for its discovery. Survey methods that maximize a searcher’s ability to detect an incipient population are therefore critical for successful EDRR. Brown treesnakes (Boiga irregularis) on Guåhan are a classic cautionary example of the dangers of not detecting an invasion early on, and the risk of their introduction to other islands within the Marianas, Hawai’i and beyond remains. Nocturnal visual surveys are known to detect brown treesnakes of all sizes and are the primary detection tool used by the Brown Treesnake Rapid Response Team, but detection probability remains low in complex forest habitats. As such, we investigated the use of two potential enhancements to nocturnal visual surveys – a live mouse lure and spray scent attractant – that may create hotspots of increased detection probability during surveys. We found that, while brown treesnake detection probabilities were low for all surveys, visual surveys conducted on transects with live mouse lures resulted in detection probabilities that were 1.3 times higher than on transects without live mouse lures. Conversely, the spray scent attractant did not increase the probability of detecting brown treesnakes compared to transects without scent, and in fact had detection probabilities that were 0.66 times lower, though the reasons for this phenomenon are unclear. Unlike scent attractants, live mouse lures likely provide both visual and olfactory cues that attract brown treesnakes to transects and thus provide more opportunities to detect and capture them. These enhancements were trialed on Guåhan, where prey populations are depressed. It remains unclear whether live mouse lures will be as effective for EDRR applications in prey-rich settings.
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Eradication and Control Strategies for Red Imported Fire Ants (Solenopsis invicta) in Taiwan. SUSTAINABILITY 2020. [DOI: 10.3390/su12103951] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Invasive alien species are one of the major threats to biological diversity, public safety, agriculture, and economics. In recent years, a new wave of the red imported fire ant (RIFA) has been detected in new regions, including Kobe (Japan), Daegu (South Korea), Kaohsiung (Taiwan), and other locations in southeast Asia. Due to the increasing number of invasions, practitioners and scientists are seeking effective strategies to respond to RIFA invasions in Pacific regions, especially in countries that have had no presence of RIFA. This study aims to identify the strategies adopted to eradicate RIFA in Taiwan and to elucidate some of the assumptions about RIFA prevention and treatment in infested areas with diverse land patterns. Through a literature review and examination of eradication cases in Taiwan, five essential eradication lessons are discussed: (1) Immediate action through partnership with universities and the private sector; (2) engagement with the public and community with an interest in RIFA control through technology; (3) establishment of multi-level horizontal networks of response teams; (4) strategy implementation ranging from large-scale prevention to precise treatment; and (5) adoption of technology and social media. These strategies will have implications and applications for east and south Asian countries that are dealing with similar challenges.
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Boback SM, Nafus MG, Yackel Adams AA, Reed RN. Use of visual surveys and radiotelemetry reveals sources of detection bias for a cryptic snake at low densities. Ecosphere 2020. [DOI: 10.1002/ecs2.3000] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
Affiliation(s)
- Scott M. Boback
- Department of Biology Dickinson College Carlisle Pennsylvania USA
| | - Melia G. Nafus
- Fort Collins Science Center U.S. Geological Survey Fort Collins Colorado USA
| | - Amy A. Yackel Adams
- Fort Collins Science Center U.S. Geological Survey Fort Collins Colorado USA
| | - Robert N. Reed
- Fort Collins Science Center U.S. Geological Survey Fort Collins Colorado USA
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Kim JHK, Corson P, Mulgan N, Russell JC. Rapid eradication assessment (REA): a tool for pest absence confirmation. WILDLIFE RESEARCH 2020. [DOI: 10.1071/wr18154] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
Abstract
ContextEradication of invasive species is necessary to protect and assist the recovery of native species and ecosystems. Knowing when to declare an eradication has been successful after ongoing non-detections is a challenge.
AimsThe rapid eradication assessment (REA) model is a powerful simulation framework to determine, given model parameters and a fixed level of monitoring effort, the level of confidence in declaring the success of pest eradication. The aim of the present study was to extend the current functionality of the REA model for broader applicability.
MethodsThe REA model was advanced so that it was able to account for (1) usage of multiple static device types with different probabilities of detection, (2) incursion detection at a known location and (3) usage of mobile detection devices, which are increasingly being used in conservation.
Key resultsAn invasive rat incursion response on Great Mercury Island in New Zealand is used as a comprehensive example to demonstrate the distribution of estimated probability of pest absence among the cases using the current REA model and the extensions presented here.
ConclusionsAlthough Great Mercury Island already had a sparse but extensive island-wide network of static biosecurity surveillance devices, and deployed additional static devices around the area of incursion, the greatest improvement in the estimated probability of pest absence following a rat incursion was from additionally using a trained rodent-detection dog.
ImplicationsThe added functionality in the REA model and demonstration of its use on a real-world scenario will allow more realistic application by wildlife managers.
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Lardner B, Yackel Adams AA, Savidge JA, Reed RN. Optimizing Walking Pace to Maximize Snake Detection Rate: A Visual Encounter Survey Experiment. HERPETOLOGICA 2019. [DOI: 10.1655/d-18-00020] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Affiliation(s)
- Björn Lardner
- Department of Fish, Wildlife, and Conservation Biology, Colorado State University, Fort Collins, CO 80523, USA
| | - Amy A. Yackel Adams
- U.S. Geological Survey, Fort Collins Science Center, 2150 Centre Avenue, Building C, Fort Collins, CO 80526, USA
| | - Julie A. Savidge
- Department of Fish, Wildlife, and Conservation Biology, Colorado State University, Fort Collins, CO 80523, USA
| | - Robert N. Reed
- U.S. Geological Survey, Fort Collins Science Center, 2150 Centre Avenue, Building C, Fort Collins, CO 80526, USA
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