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For: Manzourolajdad A, Spouge JL. Structural prediction of RNA switches using conditional base-pair probabilities. PLoS One 2019;14:e0217625. [PMID: 31188853 PMCID: PMC6561571 DOI: 10.1371/journal.pone.0217625] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2018] [Accepted: 05/15/2019] [Indexed: 11/23/2022] Open

For:	Manzourolajdad A, Spouge JL. Structural prediction of RNA switches using conditional base-pair probabilities. PLoS One 2019;14:e0217625. [PMID: 31188853 PMCID: PMC6561571 DOI: 10.1371/journal.pone.0217625] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2018] [Accepted: 05/15/2019] [Indexed: 11/23/2022] Open

Number

Cited by Other Article(s)

Khoroshkin M, Asarnow D, Zhou S, Navickas A, Winters A, Goudreau J, Zhou SK, Yu J, Palka C, Fish L, Borah A, Yousefi K, Carpenter C, Ansel KM, Cheng Y, Gilbert LA, Goodarzi H. A systematic search for RNA structural switches across the human transcriptome. Nat Methods 2024;21:1634-1645. [PMID: 39014073 PMCID: PMC11399106 DOI: 10.1038/s41592-024-02335-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2023] [Accepted: 05/29/2024] [Indexed: 07/18/2024]

Affiliation(s)

Matvei Khoroshkin Department of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA, USA Department of Urology, University of California, San Francisco, San Francisco, CA, USA Helen Diller Family Comprehensive Cancer Center, University of California, San Francisco, San Francisco, CA, USA Bakar Computational Health Sciences Institute, University of California, San Francisco, San Francisco, CA, USA
Daniel Asarnow Department of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA, USA Department of Biochemistry, University of Washington, Seattle, WA, USA
Shaopu Zhou Department of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA, USA Department of Urology, University of California, San Francisco, San Francisco, CA, USA Helen Diller Family Comprehensive Cancer Center, University of California, San Francisco, San Francisco, CA, USA Bakar Computational Health Sciences Institute, University of California, San Francisco, San Francisco, CA, USA
Albertas Navickas Department of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA, USA Department of Urology, University of California, San Francisco, San Francisco, CA, USA Helen Diller Family Comprehensive Cancer Center, University of California, San Francisco, San Francisco, CA, USA Bakar Computational Health Sciences Institute, University of California, San Francisco, San Francisco, CA, USA Institut Curie, UMR3348 CNRS, U1278 Inserm, Orsay, France
Aidan Winters Department of Urology, University of California, San Francisco, San Francisco, CA, USA Helen Diller Family Comprehensive Cancer Center, University of California, San Francisco, San Francisco, CA, USA Bakar Computational Health Sciences Institute, University of California, San Francisco, San Francisco, CA, USA Department of Biological and Medical Informatics, University of California, San Francisco, San Francisco, CA, USA Department of Cellular and Molecular Pharmacology, University of California, San Francisco, San Francisco, CA, USA Arc Institute, Palo Alto, CA, USA
Jackson Goudreau Department of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA, USA Department of Urology, University of California, San Francisco, San Francisco, CA, USA Helen Diller Family Comprehensive Cancer Center, University of California, San Francisco, San Francisco, CA, USA Bakar Computational Health Sciences Institute, University of California, San Francisco, San Francisco, CA, USA
Simon K Zhou Sandler Asthma Basic Research Center, University of California, San Francisco, San Francisco, CA, USA Department of Microbiology and Immunology, University of California, San Francisco, San Francisco, CA, USA
Johnny Yu Department of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA, USA Department of Urology, University of California, San Francisco, San Francisco, CA, USA Helen Diller Family Comprehensive Cancer Center, University of California, San Francisco, San Francisco, CA, USA Bakar Computational Health Sciences Institute, University of California, San Francisco, San Francisco, CA, USA
Christina Palka Gladstone Institute of Data Science and Biotechnology, San Francisco, CA, USA
Lisa Fish Department of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA, USA Department of Urology, University of California, San Francisco, San Francisco, CA, USA Helen Diller Family Comprehensive Cancer Center, University of California, San Francisco, San Francisco, CA, USA Bakar Computational Health Sciences Institute, University of California, San Francisco, San Francisco, CA, USA
Ashir Borah Department of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA, USA Department of Urology, University of California, San Francisco, San Francisco, CA, USA Helen Diller Family Comprehensive Cancer Center, University of California, San Francisco, San Francisco, CA, USA Bakar Computational Health Sciences Institute, University of California, San Francisco, San Francisco, CA, USA
Kian Yousefi Department of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA, USA Department of Urology, University of California, San Francisco, San Francisco, CA, USA Helen Diller Family Comprehensive Cancer Center, University of California, San Francisco, San Francisco, CA, USA Bakar Computational Health Sciences Institute, University of California, San Francisco, San Francisco, CA, USA
Christopher Carpenter Department of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA, USA Department of Urology, University of California, San Francisco, San Francisco, CA, USA Helen Diller Family Comprehensive Cancer Center, University of California, San Francisco, San Francisco, CA, USA Bakar Computational Health Sciences Institute, University of California, San Francisco, San Francisco, CA, USA
K Mark Ansel Sandler Asthma Basic Research Center, University of California, San Francisco, San Francisco, CA, USA Department of Microbiology and Immunology, University of California, San Francisco, San Francisco, CA, USA
Yifan Cheng Department of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA, USA Howard Hughes Medical Institute, University of California San Francisco, San Francisco, CA, USA
Luke A Gilbert Department of Urology, University of California, San Francisco, San Francisco, CA, USA Helen Diller Family Comprehensive Cancer Center, University of California, San Francisco, San Francisco, CA, USA Department of Cellular and Molecular Pharmacology, University of California, San Francisco, San Francisco, CA, USA Arc Institute, Palo Alto, CA, USA
Hani Goodarzi Department of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA, USA. Department of Urology, University of California, San Francisco, San Francisco, CA, USA. Helen Diller Family Comprehensive Cancer Center, University of California, San Francisco, San Francisco, CA, USA. Bakar Computational Health Sciences Institute, University of California, San Francisco, San Francisco, CA, USA. Arc Institute, Palo Alto, CA, USA.

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