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Barret L, Liaigre L, Hlavaty A, Giai J, Laporte S, Ollier E, Meyer N, Khouri C, Cucherat M, Roustit M. Priors and decision thresholds in phase 2 and phase 3 randomized controlled trials evaluating drug efficacy using Bayesian methods: a systematic review. J Clin Epidemiol 2025; 179:111651. [PMID: 39724990 DOI: 10.1016/j.jclinepi.2024.111651] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2024] [Revised: 11/15/2024] [Accepted: 12/19/2024] [Indexed: 12/28/2024]
Abstract
OBJECTIVES To describe the priors and decision thresholds in phase 2 and 3 randomized controlled trials (RCTs) evaluating drug efficacy using Bayesian methods. STUDY DESIGN AND SETTING A systematic review of phase 2 and 3 RCTs evaluating drug efficacy through Bayesian inference was conducted across the MEDLINE, EMBASE, and Cochrane databases, with no date restrictions until September 2022. The type of prior used for the analysis of the primary endpoint and its characteristics (type and parameters of the distribution, justification, and sensitivity analysis), the use of a posterior probability decision threshold defined a priori, and its value, were extracted. RESULTS From 1161 articles screened, 69 articles were ultimately included, encompassing a total of 91 comparisons, as some trials assessed multiple primary endpoints or treatments. The prior was assigned to treatment effect in 51% of the cases (n = 46) to each arm in 37% (n = 34) and was not explicitly defined in 12% (n = 11). Prior distribution was described (with its parameters) in 59% of cases (n = 54). A decision threshold was set a priori in 68% of the results (n = 62), and its value ranged from 70% to 99% (median 95%). CONCLUSION The inconsistent description of priors, along with the wide variation and occasional absence of decision thresholds, underscore the need for clear guidelines on the use and reporting of Bayesian methods. PLAIN LANGUAGE SUMMARY Bayesian methods are being used more frequently in clinical trials to assess drug's efficacy. These methods offer flexibility by incorporating prior knowledge into the analysis. However, the use of Bayesian approaches is still not widespread, and there are challenges with how results are interpreted, partly due to a lack of clear standards. We conducted a systematic review to describe how Bayesian methods were used and reported in phase 2 and 3 clinical trials assessing drug efficacy. We looked at the types of prior information used in the analyses and how decisions about efficacy were made based on the results. Out of 1161 studies reviewed, 69 were included in the analysis, covering 91 drug comparisons. The priors in Bayesian drug trials were assigned to treatment effects or each arm, often justified but variably describe. Similarly, decision thresholds for determining drug efficacy were preset in most studies, but with heterogeneity in the thresholds used to conclude. Our findings highlight the need for clearer guidelines on using Bayesian methods in clinical trials to improve transparency and consistency in how results are reported.
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Affiliation(s)
- Lorraine Barret
- University Grenoble Alpes, Inserm, CHU Grenoble Alpes, CIC 1406, Grenoble 38000, France
| | - Léa Liaigre
- University Grenoble Alpes, Inserm, CHU Grenoble Alpes, CIC 1406, Grenoble 38000, France
| | - Alex Hlavaty
- University Grenoble Alpes, Inserm, CHU Grenoble Alpes, CIC 1406, Grenoble 38000, France; University Grenoble Alpes, Inserm, HP2, U1300, Grenoble 38000, France
| | - Joris Giai
- University Grenoble Alpes, Inserm, CHU Grenoble Alpes, CIC 1406, Grenoble 38000, France; University Grenoble Alpes, CNRS, UMR 5525, VetAgro Sup, Grenoble INP, TIMC, Grenoble 38000, France
| | - Silvy Laporte
- University Jean Monnet, Mines Saint- Étienne, INSERM, U1059, Sainbiose, CHU Saint-Étienne, Service de Pharmacologie Clinique, Saint-Étienne F-42023, France; Réseau RECaP (Recherche en épidémiologie clinique et en santé publique), F-CRIN, Inserm, Paris 75013, France
| | - Edouard Ollier
- University Jean Monnet, Mines Saint- Étienne, INSERM, U1059, Sainbiose, CHU Saint-Étienne, Service de Pharmacologie Clinique, Saint-Étienne F-42023, France; Réseau RECaP (Recherche en épidémiologie clinique et en santé publique), F-CRIN, Inserm, Paris 75013, France
| | - Nicolas Meyer
- Pôle de Santé Publique, GMRC, Hôpitaux Universitaires de Strasbourg, Strasbourg, France
| | - Charles Khouri
- University Grenoble Alpes, Inserm, CHU Grenoble Alpes, CIC 1406, Grenoble 38000, France; University Grenoble Alpes, Inserm, HP2, U1300, Grenoble 38000, France; Réseau RECaP (Recherche en épidémiologie clinique et en santé publique), F-CRIN, Inserm, Paris 75013, France
| | - Michel Cucherat
- Metaevidence.Org, Service de Pharmacologie et de Toxicologie, hospices civils de Lyon, Lyon 69000, France
| | - Matthieu Roustit
- University Grenoble Alpes, Inserm, CHU Grenoble Alpes, CIC 1406, Grenoble 38000, France; University Grenoble Alpes, Inserm, HP2, U1300, Grenoble 38000, France; Réseau RECaP (Recherche en épidémiologie clinique et en santé publique), F-CRIN, Inserm, Paris 75013, France.
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Chen J, Duan Y, Che J, Zhu J. Dysfunction of dendritic cells in tumor microenvironment and immunotherapy. Cancer Commun (Lond) 2024; 44:1047-1070. [PMID: 39051512 PMCID: PMC11492303 DOI: 10.1002/cac2.12596] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2024] [Revised: 06/10/2024] [Accepted: 07/13/2024] [Indexed: 07/27/2024] Open
Abstract
Dendritic cells (DCs) comprise diverse cell populations that play critical roles in antigen presentation and triggering immune responses in the body. However, several factors impair the immune function of DCs and may promote immune evasion in cancer. Understanding the mechanism of DC dysfunction and the diverse functions of heterogeneous DCs in the tumor microenvironment (TME) is critical for designing effective strategies for cancer immunotherapy. Clinical applications targeting DCs summarized in this report aim to improve immune infiltration and enhance the biological function of DCs to modulate the TME to prevent cancer cells from evading the immune system. Herein, factors in the TME that induce DC dysfunction, such as cytokines, hypoxic environment, tumor exosomes and metabolites, and co-inhibitory molecules, have been described. Furthermore, several key signaling pathways involved in DC dysfunction and signal-relevant drugs evaluated in clinical trials were identified. Finally, this review provides an overview of current clinical immunotherapies targeting DCs, especially therapies with proven clinical outcomes, and explores future developments in DC immunotherapies.
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Affiliation(s)
- Jie Chen
- Jecho Institute Co., LtdShanghaiP. R. China
| | - Yuhang Duan
- Engineering Research Center of Cell & Therapeutic AntibodyMinistry of EducationBeijingP. R. China
- Shanghai Jiao Tong University, School of PharmacyShanghaiP. R. China
| | - Junye Che
- Jecho Institute Co., LtdShanghaiP. R. China
| | - Jianwei Zhu
- Jecho Institute Co., LtdShanghaiP. R. China
- Engineering Research Center of Cell & Therapeutic AntibodyMinistry of EducationBeijingP. R. China
- Shanghai Jiao Tong University, School of PharmacyShanghaiP. R. China
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Wenger M, Grosse-Kathoefer S, Kraiem A, Pelamatti E, Nunes N, Pointner L, Aglas L. When the allergy alarm bells toll: The role of Toll-like receptors in allergic diseases and treatment. Front Mol Biosci 2023; 10:1204025. [PMID: 37426425 PMCID: PMC10325731 DOI: 10.3389/fmolb.2023.1204025] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2023] [Accepted: 06/08/2023] [Indexed: 07/11/2023] Open
Abstract
Toll-like receptors of the human immune system are specialized pathogen detectors able to link innate and adaptive immune responses. TLR ligands include among others bacteria-, mycoplasma- or virus-derived compounds such as lipids, lipo- and glycoproteins and nucleic acids. Not only are genetic variations in TLR-related genes associated with the pathogenesis of allergic diseases, including asthma and allergic rhinitis, their expression also differs between allergic and non-allergic individuals. Due to a complex interplay of genes, environmental factors, and allergen sources the interpretation of TLRs involved in immunoglobulin E-mediated diseases remains challenging. Therefore, it is imperative to dissect the role of TLRs in allergies. In this review, we discuss i) the expression of TLRs in organs and cell types involved in the allergic immune response, ii) their involvement in modulating allergy-associated or -protective immune responses, and iii) how differential activation of TLRs by environmental factors, such as microbial, viral or air pollutant exposure, results in allergy development. However, we focus on iv) allergen sources interacting with TLRs, and v) how targeting TLRs could be employed in novel therapeutic strategies. Understanding the contributions of TLRs to allergy development allow the identification of knowledge gaps, provide guidance for ongoing research efforts, and built the foundation for future exploitation of TLRs in vaccine design.
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Wang J, Zhou Y, Zhang H, Hu L, Liu J, Wang L, Wang T, Zhang H, Cong L, Wang Q. Pathogenesis of allergic diseases and implications for therapeutic interventions. Signal Transduct Target Ther 2023; 8:138. [PMID: 36964157 PMCID: PMC10039055 DOI: 10.1038/s41392-023-01344-4] [Citation(s) in RCA: 114] [Impact Index Per Article: 57.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2022] [Revised: 01/20/2023] [Accepted: 02/03/2023] [Indexed: 03/26/2023] Open
Abstract
Allergic diseases such as allergic rhinitis (AR), allergic asthma (AAS), atopic dermatitis (AD), food allergy (FA), and eczema are systemic diseases caused by an impaired immune system. Accompanied by high recurrence rates, the steadily rising incidence rates of these diseases are attracting increasing attention. The pathogenesis of allergic diseases is complex and involves many factors, including maternal-fetal environment, living environment, genetics, epigenetics, and the body's immune status. The pathogenesis of allergic diseases exhibits a marked heterogeneity, with phenotype and endotype defining visible features and associated molecular mechanisms, respectively. With the rapid development of immunology, molecular biology, and biotechnology, many new biological drugs have been designed for the treatment of allergic diseases, including anti-immunoglobulin E (IgE), anti-interleukin (IL)-5, and anti-thymic stromal lymphopoietin (TSLP)/IL-4, to control symptoms. For doctors and scientists, it is becoming more and more important to understand the influencing factors, pathogenesis, and treatment progress of allergic diseases. This review aimed to assess the epidemiology, pathogenesis, and therapeutic interventions of allergic diseases, including AR, AAS, AD, and FA. We hope to help doctors and scientists understand allergic diseases systematically.
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Affiliation(s)
- Ji Wang
- National Institute of TCM constitution and Preventive Medicine, School of Chinese Medicine, Beijing University of Chinese Medicine, Beijing, 100029, P.R. China
| | - Yumei Zhou
- National Institute of TCM constitution and Preventive Medicine, School of Chinese Medicine, Beijing University of Chinese Medicine, Beijing, 100029, P.R. China
| | - Honglei Zhang
- National Institute of TCM constitution and Preventive Medicine, School of Chinese Medicine, Beijing University of Chinese Medicine, Beijing, 100029, P.R. China
| | - Linhan Hu
- National Institute of TCM constitution and Preventive Medicine, School of Chinese Medicine, Beijing University of Chinese Medicine, Beijing, 100029, P.R. China
| | - Juntong Liu
- National Institute of TCM constitution and Preventive Medicine, School of Chinese Medicine, Beijing University of Chinese Medicine, Beijing, 100029, P.R. China
| | - Lei Wang
- National Cancer Center/National Clinical Research Center for Cancer/Cancer Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, 1000210, China
| | - Tianyi Wang
- National Institute of TCM constitution and Preventive Medicine, School of Chinese Medicine, Beijing University of Chinese Medicine, Beijing, 100029, P.R. China
| | - Haiyun Zhang
- National Institute of TCM constitution and Preventive Medicine, School of Chinese Medicine, Beijing University of Chinese Medicine, Beijing, 100029, P.R. China
| | - Linpeng Cong
- National Institute of TCM constitution and Preventive Medicine, School of Chinese Medicine, Beijing University of Chinese Medicine, Beijing, 100029, P.R. China
| | - Qi Wang
- National Institute of TCM constitution and Preventive Medicine, School of Chinese Medicine, Beijing University of Chinese Medicine, Beijing, 100029, P.R. China.
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Matsuyama T, Matsuyama H, Dotake Y, Takagi K, Machida K, Inoue H. The Therapeutic Potential for Targeting Group 2 Innate Lymphoid Cells in Asthma. Front Immunol 2022; 13:930862. [PMID: 35911708 PMCID: PMC9327784 DOI: 10.3389/fimmu.2022.930862] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2022] [Accepted: 06/14/2022] [Indexed: 11/22/2022] Open
Abstract
T helper type 2 cells (Th2 cells) and group 2 innate lymphoid cells (ILC2s) play an important role in the pathophysiology of asthma, including airway eosinophilic inflammation. ILC2s are activated by epithelial-derived cytokines [interleukin-25 (IL-25), IL-33, and thymic stromal lymphopoietin (TSLP)] from airway epithelial cells, leading to the release of high amounts of type 2 cytokines, such as IL-5 and IL-13. ILC2s induce airway inflammation in an antigen-independent manner, and ILC2s are considered to be involved in the pathogenesis of asthma exacerbation. Furthermore, ILC2 activation might also confer steroid resistance. Many recent studies in humans and mice are increasingly demonstrating that the function of ILC2s is regulated not just by epithelial-derived cytokines but by a variety of cytokines and mediators derived from innate immune cells. Furthermore, the biologics targeting these cytokines and/or their receptors have been shown to reduce asthma exacerbations and improve lung function and quality of life in asthmatics. This article reviews the current treatment landscape for type 2 airway inflammation in asthma and discusses the therapeutic potential for targeting ILC2s.
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Okuzumi S, Miyata J, Kabata H, Mochimaru T, Kagawa S, Masaki K, Irie M, Morita H, Fukunaga K. TLR7 Agonist Suppresses ILC2-mediated Inflammation via IL-27-producing Interstitial Macrophages. Am J Respir Cell Mol Biol 2021; 65:309-318. [PMID: 34003734 DOI: 10.1165/rcmb.2021-0042oc] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022] Open
Abstract
Group 2 innate lymphoid cells (ILC2s) play an important role in the pathophysiology of asthma via the robust production of type 2 cytokines. Recent studies have demonstrated that Toll-like receptor 7 (TLR7) signaling skews toward a type 1 inflammatory response in asthma, which may lead to the development of novel treatment strategies. However, the effect of TLR7 signaling on ILC2-dependent non-allergic eosinophilic inflammation remains unclear. In this study, we investigated the effects of R848, a TLR7 agonist, in a mouse model of IL-33-induced eosinophilic airway inflammation. Intranasal administration of R848 decreased infiltration of airway eosinophils and ILC2s, mucus production in epithelial cells, and type 2 cytokine production. Flow cytometric analysis identified an increased number of interstitial macrophages (IMs) expressing a high level of TLR7 in the lung upon IL-33 stimulation. IL-33-induced IMs also expressed high levels of M2-type genes and chemokines (CCL17 and CCL24). However, R848 stimulation modified these gene expressions and elicited the production of interleukin 27 (IL-27). Co-culture experiments revealed that IL-33-induced IMs directly suppressed ILC2 activation in response to R848. In addition, the inhibitory effects of R848 on ILC2-induced type 2 inflammation were defective in WSX-1-deficient mice lacking the IL-27 receptor. Taken together, these findings indicate that R848 stimulates IL-33-induced IMs to suppress ILC2-mediated type 2 airway inflammation via IL-27. These findings highlight the therapeutic potential of TLR7 agonists and/or IL-27 cascades in non-allergic asthma.
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Affiliation(s)
- Shinichi Okuzumi
- Keio University School of Medicine, Pulmonary Medicine, Shinjuku-ku, Japan
| | - Jun Miyata
- National Defense Medical College, 13077, Division of Pulmonary Medicine, Department of Medicine, Tokorozawa, Japan
| | - Hiroki Kabata
- Keio University School of Medicine, Pulmonary Medicine, Shinjuku-ku, Japan;
| | - Takao Mochimaru
- Keio University, School of Medicine, Division of Pulmonary Medicine, Department of Medicine, Shinjuku-ku, Japan
| | - Shizuko Kagawa
- Keio University School of Medicine, Pulmonary Medicine, Shinjuku-ku, Japan
| | - Katsunori Masaki
- Keio University School of Medicine, Pulmonary Medicine, Shinjuku-ku, Japan
| | - Misato Irie
- Keio University School of Medicine, Pulmonary Medicine, Shinjuku-ku, Japan
| | - Hideaki Morita
- National Research Institute for Child Health and Development, Tokyo, Japan
| | - Koichi Fukunaga
- Keio University School of Medicine, Pulmonary Medicine, Shinjuku-ku, Japan
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