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For: Spier Camposano H, Molin WT, Saski CA. Sequence characterization of eccDNA content in glyphosate sensitive and resistant Palmer amaranth from geographically distant populations. PLoS One 2022;17:e0260906. [PMID: 36103503 PMCID: PMC9473621 DOI: 10.1371/journal.pone.0260906] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2021] [Accepted: 08/30/2022] [Indexed: 11/19/2022]  Open
Number Cited by Other Article(s)
1
Carvalho-Moore P, Borgato EA, Cutti L, Porri A, Meiners I, Lerchl J, Norsworthy JK, Patterson EL. A rearranged Amaranthus palmeri extrachromosomal circular DNA confers resistance to glyphosate and glufosinate. THE PLANT CELL 2025;37:koaf069. [PMID: 40152451 PMCID: PMC11985328 DOI: 10.1093/plcell/koaf069] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/27/2025] [Revised: 02/07/2025] [Accepted: 02/22/2025] [Indexed: 03/29/2025]
2
Raiyemo DA, Montgomery JS, Cutti L, Abdollahi F, Llaca V, Fengler K, Lopez AJ, Morran S, Saski CA, Nelson DR, Patterson EL, Gaines TA, Tranel PJ. Chromosome-level assemblies of Amaranthus palmeri, Amaranthus retroflexus, and Amaranthus hybridus allow for genomic comparisons and identification of a sex-determining region. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2025;121:e70027. [PMID: 39994881 PMCID: PMC11850965 DOI: 10.1111/tpj.70027] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/01/2024] [Revised: 12/17/2024] [Accepted: 01/24/2025] [Indexed: 02/26/2025]
3
Abbasi AF, Asim MN, Ahmed S, Dengel A. Long extrachromosomal circular DNA identification by fusing sequence-derived features of physicochemical properties and nucleotide distribution patterns. Sci Rep 2024;14:9466. [PMID: 38658614 PMCID: PMC11043385 DOI: 10.1038/s41598-024-57457-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2023] [Accepted: 03/18/2024] [Indexed: 04/26/2024]  Open
4
Fu W, MacGregor DR, Comont D, Saski CA. Sequence Characterization of Extra-Chromosomal Circular DNA Content in Multiple Blackgrass (Alopecurus myosuroides) Populations. Genes (Basel) 2023;14:1905. [PMID: 37895254 PMCID: PMC10606437 DOI: 10.3390/genes14101905] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2023] [Revised: 09/27/2023] [Accepted: 09/28/2023] [Indexed: 10/29/2023]  Open
5
Koo DH, Sathishraj R, Nakka S, Ju Y, Nandula VK, Jugulam M, Friebe B, Gill BS. Extrachromosomal circular DNA-mediated spread of herbicide resistance in interspecific hybrids of pigweed. PLANT PHYSIOLOGY 2023;193:229-233. [PMID: 37186777 PMCID: PMC10469533 DOI: 10.1093/plphys/kiad281] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/01/2023] [Revised: 04/14/2023] [Accepted: 04/18/2023] [Indexed: 05/17/2023]
6
Chitwood DG, Uy L, Fu W, Klaubert SR, Harcum SW, Saski CA. Dynamics of Amino Acid Metabolism, Gene Expression, and Circulomics in a Recombinant Chinese Hamster Ovary Cell Line Adapted to Moderate and High Levels of Extracellular Lactate. Genes (Basel) 2023;14:1576. [PMID: 37628627 PMCID: PMC10454118 DOI: 10.3390/genes14081576] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2023] [Revised: 07/20/2023] [Accepted: 07/21/2023] [Indexed: 08/27/2023]  Open
7
Ullah I, Dunwell JM. Bioinformatic, genetic and molecular analysis of several badnavirus sequences integrated in the genomes of diverse cocoa (Theobroma cacao L.) germplasm. Saudi J Biol Sci 2023;30:103648. [PMID: 37131491 PMCID: PMC10149277 DOI: 10.1016/j.sjbs.2023.103648] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2023] [Revised: 03/14/2023] [Accepted: 03/31/2023] [Indexed: 05/04/2023]  Open
8
Chitwood DG, Wang Q, Klaubert SR, Green K, Wu CH, Harcum SW, Saski CA. Microevolutionary dynamics of eccDNA in Chinese hamster ovary cells grown in fed-batch cultures under control and lactate-stressed conditions. Sci Rep 2023;13:1200. [PMID: 36681715 PMCID: PMC9862248 DOI: 10.1038/s41598-023-27962-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2022] [Accepted: 01/10/2023] [Indexed: 01/22/2023]  Open
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