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Johnson JS, Niwa M, O'Connor KN, Malone BJ, Sutter ML. Hierarchical emergence of opponent coding in auditory belt cortex. J Neurophysiol 2025; 133:944-964. [PMID: 39963949 DOI: 10.1152/jn.00519.2024] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2024] [Revised: 11/20/2024] [Accepted: 02/12/2025] [Indexed: 03/11/2025] Open
Abstract
We recorded from neurons in primary auditory cortex (A1) and middle-lateral belt area (ML) while rhesus macaques either discriminated amplitude-modulated noise (AM) from unmodulated noise or passively heard the same stimuli. We used several post hoc pooling models to investigate the ability of auditory cortex to leverage population coding for AM detection. We find that pooled-response AM detection is better in the active condition than the passive condition, and better using rate-based coding than synchrony-based coding. Neurons can be segregated into two classes based on whether they increase (INC) or decrease (DEC) their firing rate in response to increasing modulation depth. In these samples, A1 had relatively fewer DEC neurons (26%) than ML (45%). When responses were pooled without segregating these classes, AM detection using rate-based coding was much better in A1 than in ML, but when pooling only INC neurons, AM detection in ML approached that found in A1. Pooling only DEC neurons resulted in impaired AM detection in both areas. To investigate the role of DEC neurons, we devised two pooling methods that opposed DEC and INC neurons-a direct subtractive method and a two-pool push-pull opponent method. Only the push-pull opponent method resulted in superior AM detection relative to indiscriminate pooling. In the active condition, the opponent method was superior to pooling only INC neurons during the late portion of the response in ML. These results suggest that the increasing prevalence of the DEC response type in ML can be leveraged by appropriate methods to improve AM detection.NEW & NOTEWORTHY We used several post hoc pooling models to investigate the ability of primate auditory cortex to leverage population coding in the detection of amplitude-modulated sounds. When cells are indiscriminately pooled, primary auditory cortex (A1) detects amplitude-modulated sounds better than middle-lateral belt (ML). When cells that decrease firing rate with increasing modulation depth are excluded, or used in a push-pull opponent fashion, detection is similar in the two areas, and macaque behavior can be approximated using reasonably sized pools.
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Affiliation(s)
- Jeffrey S Johnson
- Center for Neuroscience, University of California at Davis, Davis, California, United States
| | - Mamiko Niwa
- Center for Neuroscience, University of California at Davis, Davis, California, United States
| | - Kevin N O'Connor
- Center for Neuroscience, University of California at Davis, Davis, California, United States
- Department of Neurobiology, Physiology and Behavior, University of California at Davis, Davis, California, United States
| | - Brian J Malone
- Department of Neurobiology, Physiology and Behavior, University of California at Davis, Davis, California, United States
| | - Mitchell L Sutter
- Center for Neuroscience, University of California at Davis, Davis, California, United States
- Department of Neurobiology, Physiology and Behavior, University of California at Davis, Davis, California, United States
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2
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Tye KM, Miller EK, Taschbach FH, Benna MK, Rigotti M, Fusi S. Mixed selectivity: Cellular computations for complexity. Neuron 2024; 112:2289-2303. [PMID: 38729151 PMCID: PMC11257803 DOI: 10.1016/j.neuron.2024.04.017] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2023] [Revised: 03/08/2024] [Accepted: 04/12/2024] [Indexed: 05/12/2024]
Abstract
The property of mixed selectivity has been discussed at a computational level and offers a strategy to maximize computational power by adding versatility to the functional role of each neuron. Here, we offer a biologically grounded implementational-level mechanistic explanation for mixed selectivity in neural circuits. We define pure, linear, and nonlinear mixed selectivity and discuss how these response properties can be obtained in simple neural circuits. Neurons that respond to multiple, statistically independent variables display mixed selectivity. If their activity can be expressed as a weighted sum, then they exhibit linear mixed selectivity; otherwise, they exhibit nonlinear mixed selectivity. Neural representations based on diverse nonlinear mixed selectivity are high dimensional; hence, they confer enormous flexibility to a simple downstream readout neural circuit. However, a simple neural circuit cannot possibly encode all possible mixtures of variables simultaneously, as this would require a combinatorially large number of mixed selectivity neurons. Gating mechanisms like oscillations and neuromodulation can solve this problem by dynamically selecting which variables are mixed and transmitted to the readout.
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Affiliation(s)
- Kay M Tye
- Salk Institute for Biological Studies, La Jolla, CA, USA; Howard Hughes Medical Institute, La Jolla, CA; Department of Neurobiology, School of Biological Sciences, University of California, San Diego, La Jolla, CA 92093, USA; Kavli Institute for Brain and Mind, San Diego, CA, USA.
| | - Earl K Miller
- The Picower Institute for Learning and Memory, Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
| | - Felix H Taschbach
- Salk Institute for Biological Studies, La Jolla, CA, USA; Biological Science Graduate Program, University of California, San Diego, La Jolla, CA 92093, USA; Department of Neurobiology, School of Biological Sciences, University of California, San Diego, La Jolla, CA 92093, USA.
| | - Marcus K Benna
- Department of Neurobiology, School of Biological Sciences, University of California, San Diego, La Jolla, CA 92093, USA.
| | | | - Stefano Fusi
- Center for Theoretical Neuroscience, Columbia University, New York, NY, USA; Zuckerman Mind Brain Behavior Institute, Columbia University, New York, NY, USA; Department of Neuroscience, Columbia University, New York, NY, USA; Kavli Institute for Brain Science, Columbia University, New York, NY, USA.
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3
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Hajnal MA, Tran D, Einstein M, Martelo MV, Safaryan K, Polack PO, Golshani P, Orbán G. Continuous multiplexed population representations of task context in the mouse primary visual cortex. Nat Commun 2023; 14:6687. [PMID: 37865648 PMCID: PMC10590415 DOI: 10.1038/s41467-023-42441-w] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2023] [Accepted: 10/10/2023] [Indexed: 10/23/2023] Open
Abstract
Effective task execution requires the representation of multiple task-related variables that determine how stimuli lead to correct responses. Even the primary visual cortex (V1) represents other task-related variables such as expectations, choice, and context. However, it is unclear how V1 can flexibly accommodate these variables without interfering with visual representations. We trained mice on a context-switching cross-modal decision task, where performance depends on inferring task context. We found that the context signal that emerged in V1 was behaviorally relevant as it strongly covaried with performance, independent from movement. Importantly, this signal was integrated into V1 representation by multiplexing visual and context signals into orthogonal subspaces. In addition, auditory and choice signals were also multiplexed as these signals were orthogonal to the context representation. Thus, multiplexing allows V1 to integrate visual inputs with other sensory modalities and cognitive variables to avoid interference with the visual representation while ensuring the maintenance of task-relevant variables.
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Affiliation(s)
- Márton Albert Hajnal
- Department of Computational Sciences, Wigner Research Center for Physics, Budapest, 1121, Hungary
| | - Duy Tran
- Department of Neurology, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, 90095, USA
- Albert Einstein College of Medicine, New York, NY, 10461, USA
| | - Michael Einstein
- Department of Neurology, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, 90095, USA
| | - Mauricio Vallejo Martelo
- Department of Neurology, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, 90095, USA
| | - Karen Safaryan
- Department of Neurology, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, 90095, USA
| | - Pierre-Olivier Polack
- Center for Molecular and Behavioral Neuroscience, Rutgers University, Newark, NJ, 07102, USA
| | - Peyman Golshani
- Department of Neurology, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, 90095, USA.
- Integrative Center for Learning and Memory, Brain Research Institute, University of California, Los Angeles, Los Angeles, CA, 90095, USA.
- West Los Angeles VA Medical Center, CA, 90073, Los Angeles, USA.
| | - Gergő Orbán
- Department of Computational Sciences, Wigner Research Center for Physics, Budapest, 1121, Hungary.
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4
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Lestang JH, Cai H, Averbeck BB, Cohen YE. Functional network properties of the auditory cortex. Hear Res 2023; 433:108768. [PMID: 37075536 PMCID: PMC10205700 DOI: 10.1016/j.heares.2023.108768] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 11/28/2022] [Revised: 03/27/2023] [Accepted: 04/11/2023] [Indexed: 04/21/2023]
Abstract
The auditory system transforms auditory stimuli from the external environment into perceptual auditory objects. Recent studies have focused on the contribution of the auditory cortex to this transformation. Other studies have yielded important insights into the contributions of neural activity in the auditory cortex to cognition and decision-making. However, despite this important work, the relationship between auditory-cortex activity and behavior/perception has not been fully elucidated. Two of the more important gaps in our understanding are (1) the specific and differential contributions of different fields of the auditory cortex to auditory perception and behavior and (2) the way networks of auditory neurons impact and facilitate auditory information processing. Here, we focus on recent work from non-human-primate models of hearing and review work related to these gaps and put forth challenges to further our understanding of how single-unit activity and network activity in different cortical fields contribution to behavior and perception.
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Affiliation(s)
- Jean-Hugues Lestang
- Departments of Otorhinolaryngology, University of Pennsylvania, Philadelphia, PA 19104, USA
| | - Huaizhen Cai
- Departments of Otorhinolaryngology, University of Pennsylvania, Philadelphia, PA 19104, USA
| | - Bruno B Averbeck
- Laboratory of Neuropsychology, National Institute of Mental Health, National Institutes of Health, Bethesda, MD 20892, USA.
| | - Yale E Cohen
- Departments of Otorhinolaryngology, University of Pennsylvania, Philadelphia, PA 19104, USA; Neuroscience, University of Pennsylvania, Philadelphia, PA 19104, USA; Bioengineering, University of Pennsylvania, Philadelphia, PA 19104, USA
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5
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Ahissar E, Nelinger G, Assa E, Karp O, Saraf-Sinik I. Thalamocortical loops as temporal demodulators across senses. Commun Biol 2023; 6:562. [PMID: 37237075 DOI: 10.1038/s42003-023-04881-4] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2023] [Accepted: 04/27/2023] [Indexed: 05/28/2023] Open
Abstract
Sensory information is coded in space and in time. The organization of neuronal activity in space maintains straightforward relationships with the spatial organization of the perceived environment. In contrast, the temporal organization of neuronal activity is not trivially related to external features due to sensor motion. Still, the temporal organization shares similar principles across sensory modalities. Likewise, thalamocortical circuits exhibit common features across senses. Focusing on touch, vision, and audition, we review their shared coding principles and suggest that thalamocortical systems include circuits that allow analogous recoding mechanisms in all three senses. These thalamocortical circuits constitute oscillations-based phase-locked loops, that translate temporally-coded sensory information to rate-coded cortical signals, signals that can integrate information across sensory and motor modalities. The loop also allows predictive locking to the onset of future modulations of the sensory signal. The paper thus suggests a theoretical framework in which a common thalamocortical mechanism implements temporal demodulation across senses.
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Affiliation(s)
- Ehud Ahissar
- Department of Brain Sciences, Weizmann Institute, Rehovot, 76100, Israel.
| | - Guy Nelinger
- Department of Brain Sciences, Weizmann Institute, Rehovot, 76100, Israel
| | - Eldad Assa
- Department of Brain Sciences, Weizmann Institute, Rehovot, 76100, Israel
| | - Ofer Karp
- Department of Brain Sciences, Weizmann Institute, Rehovot, 76100, Israel
| | - Inbar Saraf-Sinik
- Department of Brain Sciences, Weizmann Institute, Rehovot, 76100, Israel
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6
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Davenport CM, Teubner BJW, Han SB, Patton MH, Eom TY, Garic D, Lansdell BJ, Shirinifard A, Chang TC, Klein J, Pruett-Miller SM, Blundon JA, Zakharenko SS. Innate frequency-discrimination hyperacuity in Williams-Beuren syndrome mice. Cell 2022; 185:3877-3895.e21. [PMID: 36152627 PMCID: PMC9588278 DOI: 10.1016/j.cell.2022.08.022] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2022] [Revised: 06/14/2022] [Accepted: 08/24/2022] [Indexed: 01/26/2023]
Abstract
Williams-Beuren syndrome (WBS) is a rare disorder caused by hemizygous microdeletion of ∼27 contiguous genes. Despite neurodevelopmental and cognitive deficits, individuals with WBS have spared or enhanced musical and auditory abilities, potentially offering an insight into the genetic basis of auditory perception. Here, we report that the mouse models of WBS have innately enhanced frequency-discrimination acuity and improved frequency coding in the auditory cortex (ACx). Chemogenetic rescue showed frequency-discrimination hyperacuity is caused by hyperexcitable interneurons in the ACx. Haploinsufficiency of one WBS gene, Gtf2ird1, replicated WBS phenotypes by downregulating the neuropeptide receptor VIPR1. VIPR1 is reduced in the ACx of individuals with WBS and in the cerebral organoids derived from human induced pluripotent stem cells with the WBS microdeletion. Vipr1 deletion or overexpression in ACx interneurons mimicked or reversed, respectively, the cellular and behavioral phenotypes of WBS mice. Thus, the Gtf2ird1-Vipr1 mechanism in ACx interneurons may underlie the superior auditory acuity in WBS.
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Affiliation(s)
- Christopher M Davenport
- Department of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA
| | - Brett J W Teubner
- Department of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA
| | - Seung Baek Han
- Department of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA
| | - Mary H Patton
- Department of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA
| | - Tae-Yeon Eom
- Department of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA
| | - Dusan Garic
- Department of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA
| | - Benjamin J Lansdell
- Department of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA
| | - Abbas Shirinifard
- Department of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA
| | - Ti-Cheng Chang
- Center for Applied Bioinformatics, St. Jude Children's Research Hospital, Memphis, TN 38105, USA
| | - Jonathon Klein
- Department of Cell and Molecular Biology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA
| | - Shondra M Pruett-Miller
- Department of Cell and Molecular Biology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA
| | - Jay A Blundon
- Department of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA
| | - Stanislav S Zakharenko
- Department of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.
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7
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Downer JD, Bigelow J, Runfeldt MJ, Malone BJ. Temporally precise population coding of dynamic sounds by auditory cortex. J Neurophysiol 2021; 126:148-169. [PMID: 34077273 DOI: 10.1152/jn.00709.2020] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
Abstract
Fluctuations in the amplitude envelope of complex sounds provide critical cues for hearing, particularly for speech and animal vocalizations. Responses to amplitude modulation (AM) in the ascending auditory pathway have chiefly been described for single neurons. How neural populations might collectively encode and represent information about AM remains poorly characterized, even in primary auditory cortex (A1). We modeled population responses to AM based on data recorded from A1 neurons in awake squirrel monkeys and evaluated how accurately single trial responses to modulation frequencies from 4 to 512 Hz could be decoded as functions of population size, composition, and correlation structure. We found that a population-based decoding model that simulated convergent, equally weighted inputs was highly accurate and remarkably robust to the inclusion of neurons that were individually poor decoders. By contrast, average rate codes based on convergence performed poorly; effective decoding using average rates was only possible when the responses of individual neurons were segregated, as in classical population decoding models using labeled lines. The relative effectiveness of dynamic rate coding in auditory cortex was explained by shared modulation phase preferences among cortical neurons, despite heterogeneity in rate-based modulation frequency tuning. Our results indicate significant population-based synchrony in primary auditory cortex and suggest that robust population coding of the sound envelope information present in animal vocalizations and speech can be reliably achieved even with indiscriminate pooling of cortical responses. These findings highlight the importance of firing rate dynamics in population-based sensory coding.NEW & NOTEWORTHY Fundamental questions remain about population coding in primary auditory cortex (A1). In particular, issues of spike timing in models of neural populations have been largely ignored. We find that spike-timing in response to sound envelope fluctuations is highly similar across neuron populations in A1. This property of shared envelope phase preference allows for a simple population model involving unweighted convergence of neuronal responses to classify amplitude modulation frequencies with high accuracy.
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Affiliation(s)
- Joshua D Downer
- Department of Otolaryngology-Head and Neck Surgery, University of California, San Francisco, California
| | - James Bigelow
- Department of Otolaryngology-Head and Neck Surgery, University of California, San Francisco, California
| | - Melissa J Runfeldt
- Department of Otolaryngology-Head and Neck Surgery, University of California, San Francisco, California
| | - Brian J Malone
- Department of Otolaryngology-Head and Neck Surgery, University of California, San Francisco, California.,Kavli Institute for Fundamental Neuroscience, University of California, San Francisco, California
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8
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Mohn JL, Downer JD, O'Connor KN, Johnson JS, Sutter ML. Choice-related activity and neural encoding in primary auditory cortex and lateral belt during feature-selective attention. J Neurophysiol 2021; 125:1920-1937. [PMID: 33788616 DOI: 10.1152/jn.00406.2020] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
Abstract
Selective attention is necessary to sift through, form a coherent percept of, and make behavioral decisions on the vast amount of information present in most sensory environments. How and where selective attention is employed in cortex and how this perceptual information then informs the relevant behavioral decisions is still not well understood. Studies probing selective attention and decision-making in visual cortex have been enlightening as to how sensory attention might work in that modality; whether or not similar mechanisms are employed in auditory attention is not yet clear. Therefore, we trained rhesus macaques on a feature-selective attention task, where they switched between reporting changes in temporal (amplitude modulation, AM) and spectral (carrier bandwidth) features of a broadband noise stimulus. We investigated how the encoding of these features by single neurons in primary (A1) and secondary (middle lateral belt, ML) auditory cortex was affected by the different attention conditions. We found that neurons in A1 and ML showed mixed selectivity to the sound and task features. We found no difference in AM encoding between the attention conditions. We found that choice-related activity in both A1 and ML neurons shifts between attentional conditions. This finding suggests that choice-related activity in auditory cortex does not simply reflect motor preparation or action and supports the relationship between reported choice-related activity and the decision and perceptual process.NEW & NOTEWORTHY We recorded from primary and secondary auditory cortex while monkeys performed a nonspatial feature attention task. Both areas exhibited rate-based choice-related activity. The manifestation of choice-related activity was attention dependent, suggesting that choice-related activity in auditory cortex does not simply reflect arousal or motor influences but relates to the specific perceptual choice.
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Affiliation(s)
- Jennifer L Mohn
- Center for Neuroscience, University of California, Davis, California.,Department of Neurobiology, Physiology and Behavior, University of California, Davis, California
| | - Joshua D Downer
- Center for Neuroscience, University of California, Davis, California.,Department of Otolaryngology-Head and Neck Surgery, University of California, San Francisco, California
| | - Kevin N O'Connor
- Center for Neuroscience, University of California, Davis, California.,Department of Neurobiology, Physiology and Behavior, University of California, Davis, California
| | - Jeffrey S Johnson
- Center for Neuroscience, University of California, Davis, California.,Department of Neurobiology, Physiology and Behavior, University of California, Davis, California
| | - Mitchell L Sutter
- Center for Neuroscience, University of California, Davis, California.,Department of Neurobiology, Physiology and Behavior, University of California, Davis, California
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