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Mosca S, Yu Y, Rebek J. Preparative scale and convenient synthesis of a water-soluble, deep cavitand. Nat Protoc 2016; 11:1371-87. [PMID: 27388554 DOI: 10.1038/nprot.2016.078] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
Cavitands are established tools of supramolecular chemistry and molecular recognition, and they are finding increasing application in sensing and sequestration of physiologically relevant molecules in aqueous solution. The synthesis of a water-soluble, deep cavitand is described. The route comprises six (linear) steps from commercially available precursors, and it relies on the fourfold oligomeric cyclization reaction of resorcinol with 2,3-dihydrofuran that leads to the formation of a shallow resorcinarene framework; condensation with aromatic panels, which deepens the hydrophobic binding cavity; construction of rigid urea functionalities on the upper rim; and the introduction of the water-solubilizing methylimidazolium groups on the lower rim. Late intermediates of the synthesis can be used in the preparation of congener cavitands with different properties and applications, and a sample of such a synthetic procedure is included in this protocol. Emphasis is placed on scaled-up reactions and on purification procedures that afford materials in high yield and avoid chromatographic purification. This protocol provides improvements over previously described procedures, and it enables the preparation of sizable amounts of deep cavitands: 7 g of a water-soluble cavitand can be prepared from resorcinol in 13 working days.
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Affiliation(s)
- Simone Mosca
- The Skaggs Institute for Chemical Biology, The Scripps Research Institute, La Jolla, California, USA.,Department of Chemistry, The Scripps Research Institute, La Jolla, California, USA.,Department of Biotechnology and Biosciences, University of Milano-Bicocca, Milano, Italy
| | - Yang Yu
- The Skaggs Institute for Chemical Biology, The Scripps Research Institute, La Jolla, California, USA.,Department of Chemistry, The Scripps Research Institute, La Jolla, California, USA
| | - Julius Rebek
- The Skaggs Institute for Chemical Biology, The Scripps Research Institute, La Jolla, California, USA.,Department of Chemistry, The Scripps Research Institute, La Jolla, California, USA.,Department of Chemistry, Fudan University, Shanghai, China
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Abstract
This review focuses on molecular containers formed by assembly processes driven by the hydrophobic effect, and summarizes the progress made in the field over the last ten years. This small but growing facet of supramolecular chemistry discusses three classes of molecules used by researchers to investigate how self-assembly can be applied to form discrete, mono-dispersed, and structurally well-defined supramolecular entities. The approaches demonstrate the importance of preorganization of arrays of rigid moieties to define a specific form predisposed to bind, fold, or assemble. As the examples demonstrate, studying these systems and their properties is teaching us how to control supramolecular chemistry in water, shedding light on aspects of aqueous solutions chemistry, and illustrating novel applications that harness the unique properties of the hydrophobic effect.
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Affiliation(s)
- Jacobs H Jordan
- Department of Chemistry, Tulane University, New Orleans, LA 70118, USA.
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Laughrey Z, Gibb BC. Water-soluble, self-assembling container molecules: an update. Chem Soc Rev 2011; 40:363-86. [DOI: 10.1039/c0cs00030b] [Citation(s) in RCA: 145] [Impact Index Per Article: 10.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
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