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Zelditch ML, Swiderski DL. Effects of Procrustes Superimposition and Semilandmark Sliding on Modularity and Integration: An Investigation Using Simulations of Biological Data. Evol Biol 2023. [DOI: 10.1007/s11692-023-09600-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/31/2023]
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B Chromosomes’ Sequences in Yellow-Necked Mice Apodemus flavicollis—Exploring the Transcription. Life (Basel) 2021; 12:life12010050. [PMID: 35054443 PMCID: PMC8781039 DOI: 10.3390/life12010050] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2021] [Revised: 12/27/2021] [Accepted: 12/28/2021] [Indexed: 11/17/2022] Open
Abstract
B chromosomes (Bs) are highly polymorphic additional chromosomes in the genomes of many species. Due to the dispensability of Bs and the lack of noticeable phenotypic effects in their carriers, they were considered genetically inert for a long time. Recent studies on Bs in Apodemus flavicollis revealed their genetic composition, potential origin, and spatial organization in the interphase nucleus. Surprisingly, the genetic content of Bs in this species is preserved in all studied samples, even in geographically distinct populations, indicating its biological importance. Using RT-PCR we studied the transcription activity of three genes (Rraga, Haus6, and Cenpe) previously identified on Bs in A. flavicollis. We analysed mRNA isolated from spleen tissues of 34 animals harboring different numbers of Bs (0–3).The products of transcriptional activity of the analysed sequences differ in individuals with and without Bs. We recorded B-genes and/or genes from the standard genome in the presence of Bs, showing sex-dependent higher levels of transcriptional activity. Furthermore, the transcriptional activity of Cenpe varied with the age of the animals differently in the group with and without Bs. With aging, the amount of product was only found to significantly decrease in B carriers. The potential biological significance of all these differences is discussed in the paper.
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Jojić V, Čabrilo B, Bjelić-Čabrilo O, Jovanović VM, Budinski I, Vujošević M, Blagojević J. Canalization and developmental stability of the yellow-necked mouse (Apodemus flavicollis) mandible and cranium related to age and nematode parasitism. Front Zool 2021; 18:55. [PMID: 34689812 PMCID: PMC8543932 DOI: 10.1186/s12983-021-00439-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2021] [Accepted: 10/07/2021] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Mammalian mandible and cranium are well-established model systems for studying canalization and developmental stability (DS) as two elements of developmental homeostasis. Nematode infections are usually acquired in early life and increase in intensity with age, while canalization and DS of rodent skulls could vary through late postnatal ontogeny. We aimed to estimate magnitudes and describe patterns of mandibular and cranial canalization and DS related to age and parasite intensity (diversity) in adult yellow-necked mice (Apodemus flavicollis). RESULTS We found the absence of age-related changes in the levels of canalization for mandibular and cranial size and DS for mandibular size. However, individual measures of mandibular and cranial shape variance increased, while individual measures of mandibular shape fluctuating asymmetry (FA) decreased with age. We detected mandibular and cranial shape changes during postnatal ontogeny, but revealed no age-related dynamics of their covariance structure among and within individuals. Categories regarding parasitism differed in the level of canalization for cranial size and the level of DS for cranial shape. We observed differences in age-related dynamics of the level of canalization between non-parasitized and parasitized animals, as well as between yellow-necked mice parasitized by different number of nematode species. Likewise, individual measures of mandibular and cranial shape FA decreased with age for the mandible in the less parasitized category and increased for the cranium in the most parasitized category. CONCLUSIONS Our age-related results partly agree with previous findings. However, no rodent study so far has explored age-related changes in the magnitude of FA for mandibular size or mandibular and cranial FA covariance structure. This is the first study dealing with the nematode parasitism-related canalization and DS in rodents. We showed that nematode parasitism does not affect mandibular and cranial shape variation and covariance structure among and within individuals. However, parasite intensity (diversity) is related to ontogenetic dynamics of the levels of canalization and DS. Overall, additional studies on animals from natural populations are required before drawing some general conclusions.
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Affiliation(s)
- Vida Jojić
- Department of Genetic Research, Institute for Biological Research "Siniša Stanković" - National Institute of Republic of Serbia, University of Belgrade, Belgrade, Serbia.
| | - Borislav Čabrilo
- Department of Biology and Ecology, Faculty of Sciences, University of Novi Sad, Novi Sad, Serbia
| | - Olivera Bjelić-Čabrilo
- Department of Biology and Ecology, Faculty of Sciences, University of Novi Sad, Novi Sad, Serbia
| | - Vladimir M Jovanović
- Department of Genetic Research, Institute for Biological Research "Siniša Stanković" - National Institute of Republic of Serbia, University of Belgrade, Belgrade, Serbia.,Bioinformatics Solution Center, Freie Universität Berlin, Berlin, Germany.,Human Biology and Primate Evolution, Freie Universität Berlin, Berlin, Germany
| | - Ivana Budinski
- Department of Genetic Research, Institute for Biological Research "Siniša Stanković" - National Institute of Republic of Serbia, University of Belgrade, Belgrade, Serbia
| | - Mladen Vujošević
- Department of Genetic Research, Institute for Biological Research "Siniša Stanković" - National Institute of Republic of Serbia, University of Belgrade, Belgrade, Serbia
| | - Jelena Blagojević
- Department of Genetic Research, Institute for Biological Research "Siniša Stanković" - National Institute of Republic of Serbia, University of Belgrade, Belgrade, Serbia
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Andjelković M, Tomović L, Ivanović A. Morphological integration of the kinetic skull inNatrixsnakes. J Zool (1987) 2017. [DOI: 10.1111/jzo.12477] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Affiliation(s)
- M. Andjelković
- University of Belgrade; Institute for Biological Research “Siniša Stanković”; Belgrade Serbia
| | - L. Tomović
- University of Belgrade; Faculty of Biology; Belgrade Serbia
| | - A. Ivanović
- University of Belgrade; Faculty of Biology; Belgrade Serbia
- Naturalis Biodiversity Center; Leiden The Netherlands
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Rajičić M, Romanenko SA, Karamysheva TV, Blagojević J, Adnađević T, Budinski I, Bogdanov AS, Trifonov VA, Rubtsov NB, Vujošević M. The origin of B chromosomes in yellow-necked mice (Apodemus flavicollis)-Break rules but keep playing the game. PLoS One 2017; 12:e0172704. [PMID: 28329013 PMCID: PMC5362141 DOI: 10.1371/journal.pone.0172704] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2016] [Accepted: 02/08/2017] [Indexed: 12/30/2022] Open
Abstract
B chromosomes (Bs) are known for more than hundred years but their origin, structure and pattern of evolution are not well understood. In the past few years new methodological approaches, involving isolation of Bs followed by whole DNA amplification, DNA probe generation, and fluorescent in situ hybridization (FISH) or the B chromosome DNA sequencing, has allowed detailed analysis of their origin and molecular structure in different species. In this study we explored the origin of Bs in the yellow-necked wood mouse, Apodemus flavicollis, using generation of microdissected DNA probes followed by FISH on metaphase chromosomes. Bs of A. flavicollis were successfully isolated and DNA was used as the template for B-specific probes for the first time. We revealed homology of DNA derived from the analyzed B chromosomes to the pericentromeric region (PR) of sex chromosomes and subtelomeric region of two pairs of small autosomes, but lower homology to the rest of the Y chromosome. Moreover, all analysed Bs had the same structure regardless of their number per individual or the great geographic distance between examined populations from the Balkan Peninsula (Serbia) and Eastern Europe (south region of Russia and central Belarus). Therefore, it was suggested that B chromosomes in A. flavicollis have a unique common origin from the PR of sex chromosomes, and/or similar evolutionary pattern.
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Affiliation(s)
- M Rajičić
- Department for Genetic Research, Institute for Biological Research "Siniša Stanković", University of Belgrade, Belgrade Serbia
| | - S A Romanenko
- Institute of Molecular and Cellular Biology, SB RAS, Novosibirsk Russia
| | - T V Karamysheva
- Institute of Cytology and Genetics, SB RAS, Novosibirsk Russia
| | - J Blagojević
- Department for Genetic Research, Institute for Biological Research "Siniša Stanković", University of Belgrade, Belgrade Serbia
| | - T Adnađević
- Department for Genetic Research, Institute for Biological Research "Siniša Stanković", University of Belgrade, Belgrade Serbia
| | - I Budinski
- Department for Genetic Research, Institute for Biological Research "Siniša Stanković", University of Belgrade, Belgrade Serbia
| | - A S Bogdanov
- Koltzov Institute of Developmental Biology, RAS, Moscow Russia
| | - V A Trifonov
- Institute of Molecular and Cellular Biology, SB RAS, Novosibirsk Russia
| | - N B Rubtsov
- Institute of Cytology and Genetics, SB RAS, Novosibirsk Russia
| | - M Vujošević
- Department for Genetic Research, Institute for Biological Research "Siniša Stanković", University of Belgrade, Belgrade Serbia
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Esteve-Altava B. In search of morphological modules: a systematic review. Biol Rev Camb Philos Soc 2016; 92:1332-1347. [DOI: 10.1111/brv.12284] [Citation(s) in RCA: 81] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2016] [Revised: 05/06/2016] [Accepted: 05/10/2016] [Indexed: 12/25/2022]
Affiliation(s)
- Borja Esteve-Altava
- Department of Comparative Biomedical Sciences; Royal Veterinary College; Hawkshead Lane, North Mymms Hatfield Hertfordshire AL9 7TA UK
- Department of Anatomy; College of Medicine, Howard University; 520 W Street, NW, Numa Adams Building Washington DC 20059 USA
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López-Aguirre C, Pérez-Torres J, Wilson LAB. Cranial and mandibular shape variation in the genus Carollia (Mammalia: Chiroptera) from Colombia: biogeographic patterns and morphological modularity. PeerJ 2015; 3:e1197. [PMID: 26413433 PMCID: PMC4581772 DOI: 10.7717/peerj.1197] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2015] [Accepted: 07/28/2015] [Indexed: 01/05/2023] Open
Abstract
Neotropical bats of the genus Carollia are widely studied due to their abundance, distribution and relevance for ecosystems. However, the ecomorphological boundaries of these species are poorly differentiated, and consequently correspondence between their geographic distribution, ecological plasticity and morphological variation remains unclear. In this study, patterns of cranial and mandibular morphological variation were assessed for Carollia brevicauda, C. castanea and C. perspicillata from Colombia. Using geometric morphometrics, morphological variation was examined with respect to: differences in intraspecific variation, morphological modularity and integration, and biogeographic patterns. Patterns of intraspecific variation were different for each species in both cranial and mandibular morphology, with functional differences apparent according to diet. Cranial modularity varied between species whereas mandibular modularity did not. High cranial and mandibular correlation reflects Cranium-Mandible integration as a functional unit. Similarity between the biogeographic patterns in C. brevicauda and C. perspicillata indicates that the Andes do not act as a barrier but rather as an independent region, isolating the morphology of Andean populations of larger-bodied species. The biogeographic pattern for C. castanea was not associated with the physiography of the Andes, suggesting that large body size does not benefit C. brevicauda and C. perspicillata in maintaining homogeneous morphologies among populations.
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Affiliation(s)
- Camilo López-Aguirre
- School of Biological, Earth, and Environmental Sciences, University of New South Wales , Sydney , Australia ; Unidad de Ecología y Sistemática (UNESIS), Departamento de Biología, Pontificia Universidad Javeriana , Bogotá , Colombia
| | - Jairo Pérez-Torres
- Laboratorio de Ecología Funcional, Unidad de Ecología y Sistemática (UNESIS), Departamento de Biología, Pontificia Universidad Javeriana , Bogotá , Colombia
| | - Laura A B Wilson
- School of Biological, Earth, and Environmental Sciences, University of New South Wales , Sydney , Australia
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Adnađević T, Jovanović VM, Blagojević J, Budinski I, Čabrilo B, Bijelić-Čabrilo O, Vujošević M. Possible influence of B chromosomes on genes included in immune response and parasite burden in Apodemus flavicollis. PLoS One 2014; 9:e112260. [PMID: 25372668 PMCID: PMC4221283 DOI: 10.1371/journal.pone.0112260] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2014] [Accepted: 10/02/2014] [Indexed: 11/18/2022] Open
Abstract
Genetic background underlying wild populations immune response to different parasites is still not well understood. We studied immune response to multiple infections and to competition between different parasite species at different developmental stages in population of yellow-necked mouse, Apodemus flavicollis. Quantitative real-time PCR was used to investigate associations of MHC II-DRB, IL-10 and Tgf-β genes expressions with presence of intestinal parasites at different developmental stages. Furthermore, we were interested whether the host related characteristics (sex, age, body condition, presence of B chromosomes or expression of other genes) or characteristics of present parasites (number of adult parasites of each identified species, egg count of each parasite genus, total number of nematode individuals) affect differential expression of the studied genes. A significant invert association between the expression of MHC II-DRB and Tgf-β gene was found, which together with absence of IL-10 association confirmed modified Th2 as the main type of immune response to nematode infections. Effect of recorded parasites and parasite life-cycle stage on expression levels of MHC II-DRB gene was detected only through interactions with host-related characteristics such as sex, age, and the presence of B chromosomes. The presence of B chromosomes is associated with lower expression level of Tgf-β gene. Although the influence of host genetic background on parasite infection has already been well documented, this is the first study in mammals that gave presence of B chromosomes on immune response full consideration.
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Affiliation(s)
- Tanja Adnađević
- Department of Genetic Research, Institute for Biological Research “Siniša Stanković”, University of Belgrade, Belgrade, Serbia
- * E-mail:
| | - Vladimir M. Jovanović
- Department of Genetic Research, Institute for Biological Research “Siniša Stanković”, University of Belgrade, Belgrade, Serbia
| | - Jelena Blagojević
- Department of Genetic Research, Institute for Biological Research “Siniša Stanković”, University of Belgrade, Belgrade, Serbia
| | - Ivana Budinski
- Department of Genetic Research, Institute for Biological Research “Siniša Stanković”, University of Belgrade, Belgrade, Serbia
| | - Borislav Čabrilo
- Department of Biology and Ecology, Faculty of Sciences, University of Novi Sad, Novi Sad, Serbia
| | - Olivera Bijelić-Čabrilo
- Department of Biology and Ecology, Faculty of Sciences, University of Novi Sad, Novi Sad, Serbia
| | - Mladen Vujošević
- Department of Genetic Research, Institute for Biological Research “Siniša Stanković”, University of Belgrade, Belgrade, Serbia
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Haga Y, Iwasa MA. A note on the presence of B chromosome in the small Japanese field mouse, Apodemus argenteus, in central Honshu, Japan. RUSS J GENET+ 2014. [DOI: 10.1134/s1022795414070084] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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10
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Martínez-Vargas J, Muñoz-Muñoz F, Medarde N, López-Fuster MJ, Ventura J. Effect of chromosomal reorganizations on morphological covariation of the mouse mandible: insights from a Robertsonian system of Mus musculus domesticus. Front Zool 2014. [DOI: 10.1186/s12983-014-0051-3] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
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Genetic differentiation in populations of the yellow-necked mouse, Apodemus flavicollis, harbouring B chromosomes in different frequencies. POPUL ECOL 2012. [DOI: 10.1007/s10144-012-0333-6] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
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Jojić V, Blagojević J, Vujošević M. B chromosomes and cranial variability in yellow-necked field mice (Apodemus flavicollis). J Mammal 2011. [DOI: 10.1644/10-mamm-a-158.1] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
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Zelditch ML, Wood AR, Swiderski DL. Building Developmental Integration into Functional Systems: Function-Induced Integration of Mandibular Shape. Evol Biol 2008. [DOI: 10.1007/s11692-008-9034-7] [Citation(s) in RCA: 75] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
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