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Erdman B, Larson W, Mitro MG, Griffin JDT, Rowe D, Haglund J, Olson K, Kinnison MT. Complications of Estimating Hatchery Introgression in the Face of Rapid Divergence: A Case Study in Brook Trout ( Salvelinus fontinalis). Evol Appl 2024; 17:e70026. [PMID: 39687575 PMCID: PMC11648973 DOI: 10.1111/eva.70026] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2024] [Revised: 09/13/2024] [Accepted: 09/19/2024] [Indexed: 12/18/2024] Open
Abstract
Fish stocking has been utilized for over a century to offset extirpations or declines in abundance of many native species. These historical declines and hatchery contributions have led to uncertainty surrounding whether many contemporary populations are native, introgressed with hatchery sources, or entirely of hatchery origin. Such uncertainty is problematic for the conservation of native biodiversity as it hampers management agencies' ability to prioritize the conservation of indigenous locally adapted populations. Fortunately, genetic and genomic tools have allowed researchers to investigate these questions, often through the use of clustering or assignment approaches that are predicated on identifiable and consistent divergence between native populations and hatchery sources. Here, we apply these methods to restriction-site associated DNA (RAD) data from 643 brook trout (Salvelinus fontinalis) originating from 13 wild populations and an exogenous hatchery strain to investigate the extent of historical extirpations, hatchery contributions, and processes affecting population structure in a small area of the previously unglaciated Driftless Area of Wisconsin, USA. The results from these analyses suggest that wild populations in this region are genetically distinct even at small spatial scales, lack strong hydrologically associated population structure, rarely exchange gene flow, and have small effective population sizes. Furthermore, wild populations are substantially diverged from known hatchery strains and show minimal evidence of introgression in clustering analyses. However, we demonstrate through empirically informed simulations that distinct wild populations may potentially be hatchery-founded and have since diverged through rapid genetic drift. Collectively, the apparent lack of hydrological population structure and potential for rapid drift in the Driftless Area suggest that many native populations may have been historically extirpated and refounded by stocking events. If this is the case, then commonly used genomic clustering methods and their associated model selection criteria may result in underestimation of hatchery introgression in the face of rapid drift.
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Affiliation(s)
- Bradley Erdman
- School of Biology and Ecology, Ecology and Environmental Sciences ProgramUniversity of MaineOronoMaineUSA
- Department of Biological SciencesUniversity of New HampshireDurhamNew HampshireUSA
| | - Wesley Larson
- Auke Bay Laboratories, Alaska Fisheries Science Center, National Marine Fisheries ServiceNational Oceanic and Atmospheric AdministrationJuneauAlaskaUSA
| | - Matthew G. Mitro
- Wisconsin Department of Natural ResourcesOffice of Applied ScienceMadisonWisconsinUSA
| | - Joanna D. T. Griffin
- Wisconsin Department of Natural ResourcesBureau of Watershed ManagementMadisonWisconsinUSA
| | - David Rowe
- Wisconsin Department of Natural ResourcesBureau of Fisheries ManagementFitchburgWisconsinUSA
| | - Justin Haglund
- Wisconsin Department of Natural ResourcesBureau of Fisheries ManagementDodgevilleWisconsinUSA
| | - Kirk Olson
- Wisconsin Department of Natural ResourcesBureau of Fisheries ManagementLa CrosseWisconsinUSA
| | - Michael T. Kinnison
- School of Biology and Ecology, Ecology and Environmental Sciences ProgramUniversity of MaineOronoMaineUSA
- Maine Center for Genetics in the EnvironmentUniversity of MaineOronoMaineUSA
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Hasegawa R, Koizumi I. Consistent Negative Correlations between Parasite Infection and Host Body Condition Across Seasons Suggest Potential Harmful Impacts of Salmincola markewitschi on Wild White-Spotted Charr, Salvelinus leucomaenis. Zoolog Sci 2024; 41:192-200. [PMID: 38587914 DOI: 10.2108/zs230028] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2023] [Accepted: 10/23/2023] [Indexed: 04/10/2024]
Abstract
Assessing the impacts of parasites on wild fish populations is a fundamental and challenging aspect of the study of host-parasite relationships. Salmincola, a genus of ectoparasitic copepods, mainly infects salmonid species. This genus, which is notorious in aquaculture, damages host fishes, but its impacts under natural conditions remain largely unknown or are often considered negligible. In this study, we investigated the potential impacts of mouth-attaching Salmincola markewitschi on white-spotted charr (Salvelinus leucomaenis) through intensive field surveys across four seasons using host body condition as an indicator of harmful effects. The prevalence and parasite abundance were highest in winter and gradually decreased in summer and autumn, which might be due to host breeding and/or wintering aggregations that help parasite transmissions. Despite seasonal differences in prevalence and parasite abundance, consistent negative correlations between parasite abundance and host body condition were observed across all seasons, indicating that the mouth-attaching copepods could reduce the body condition of the host fish. This provides field evidence suggesting that S. markewitschi has a potential negative impact on wild white-spotted charr.
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Affiliation(s)
- Ryota Hasegawa
- Graduate School of Environmental Science, Hokkaido University, Hokkaido 060-0810, Japan,
| | - Itsuro Koizumi
- Graduate School of Environmental Science, Hokkaido University, Hokkaido 060-0810, Japan
- Faculty of Environmental Earth Science, Hokkaido University, Hokkaido 060-0810, Japan
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Parasites either reduce or increase host vulnerability to fishing: a case study of a parasitic copepod and its salmonid host. THE SCIENCE OF NATURE - NATURWISSENSCHAFTEN 2023; 110:10. [PMID: 36809376 DOI: 10.1007/s00114-023-01836-x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/28/2022] [Revised: 01/31/2023] [Accepted: 02/01/2023] [Indexed: 02/23/2023]
Abstract
Parasites generally increase host vulnerability to predators via host manipulation for trophic transmission and reduction of host activities. Predators also select prey depending on the parasite infection status. Despite such parasites' roles in prey-predator interactions in wild animals, how parasites affect human hunting probability and resource consumption remains unknown. We examined the effects of the ectoparasitic copepod Salmincola cf. markewitschi on fish vulnerability to angling. We found that infected fish were less vulnerable compared with non-infected fish when the fish body condition was low, which was probably due to reduced foraging activity. On the contrary, infected fish were more vulnerable when the host body condition was high, probably due to the compensation of parasites' negative effects. A Twitter analysis also suggested that people avoided eating fish with parasites and that anglers' satisfaction decreased when captured fish were parasitized. Thus, we should consider how animal hunting is affected by parasites not only for catchability but also for avoiding parasite infection sources in many local regions.
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Henriksen EH, Frainer A, Poulin R, Knudsen R, Amundsen P. Ectoparasites population dynamics are affected by host body size but not host density or water temperature in a 32‐year long time series. OIKOS 2022. [DOI: 10.1111/oik.09328] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Affiliation(s)
- Eirik H. Henriksen
- Dept of Arctic and Marine Biology, Faculty of Biosciences, Fisheries and Economics, UiT The Arctic Univ. of Norway Tromsø Norway
| | - André Frainer
- Norwegian Inst. for Nature Research (NINA), Framsenteret Tromsø Norway
| | | | - Rune Knudsen
- Dept of Arctic and Marine Biology, Faculty of Biosciences, Fisheries and Economics, UiT The Arctic Univ. of Norway Tromsø Norway
| | - Per‐Arne Amundsen
- Dept of Arctic and Marine Biology, Faculty of Biosciences, Fisheries and Economics, UiT The Arctic Univ. of Norway Tromsø Norway
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Hasegawa R, Ayer CG, Umatani Y, Miura K, Ukumura M, Katahira H, Koizumi I. Potential negative effects and heterogeneous distribution of a parasitic copepod Salmincola edwardsii (Copepoda: Lernaeopodidae) on Southern Asian Dolly Varden Salvelinus curilus in Hokkaido, Japan. Parasitol Int 2021; 87:102529. [PMID: 34896616 DOI: 10.1016/j.parint.2021.102529] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2020] [Revised: 08/19/2021] [Accepted: 12/06/2021] [Indexed: 11/25/2022]
Abstract
The genus Salmincola is an ectoparasitic copepod group commonly infesting the branchial and buccal cavities of salmonids. While negative impacts on hatchery fishes have been reported, their impacts on wild fish populations and distribution patterns are critically understudied. In the Shiretoko Peninsula, Hokkaido, Japan, we found parasites belonging to this genus on the branchial cavity of a stream salmonid, Southern Asian Dolly Varden Salvelinus curilus. All parasites recovered were identified as Salmincola edwardsii based on morphological characteristics and partial 28S rDNA sequences. Prevalence was highly heterogeneous even among neighboring streams (0-54.8%, < 10 km) with the mean intensity among streams being generally low (2.19 parasites/infeted fish). Despite the low intensity, quantile regression analysis showed negative trends between parasite intensity and host condition, suggesting that the infestation of S. edwardsii has a potential negative impact on the host salmonid. In addition, a single copepod was found from an anadromous fish, which could indicate some salinity tolerance of the copepods. It is important to evaluate the effects of Salmincola spp. on host species and determine the limiting factors on the parasite's distribution for proper management.
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Affiliation(s)
- Ryota Hasegawa
- Graduate School of Environmental Science, Hokkaido University, Sapporo, Hokkaido 060-0810, Japan.
| | - Christopher G Ayer
- Graduate School of Environmental Science, Hokkaido University, Sapporo, Hokkaido 060-0810, Japan
| | - Yoshiyuki Umatani
- Field Science Center for Northern Biosphere, Hokkaido University, Sapporo, Hokkaido 060-0809, Japan
| | - Kazuki Miura
- Shiretoko Museum, Honmachi 49, Shari, Shari-gun, Hokkaido 099-4113, Japan
| | - Miyo Ukumura
- Sapporo Wild Salmon Project, 2-1 Makomanai Park, Minami-ku, Sapporo, Hokkaido 005-0017, Japan
| | - Hirotaka Katahira
- Department of Environmental Science, School of Life and Environmental Science, Azabu University, 1-17-71 Fuchinobe, Chuo-ku, Sagamihara, Kanagawa 252-5201, Japan
| | - Itsuro Koizumi
- Graduate School of Environmental Science, Hokkaido University, Sapporo, Hokkaido 060-0810, Japan; Faculty of Environmental Earth Science, Hokkaido University, Sapporo, Hokkaido 060-0810, Japan
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Suchomel AD, Billman EJ. Prevalence and Intensity of Infection of the Parasitic Copepod Salmincola californiensis on Rainbow Trout in Birch Creek, Idaho. WEST N AM NATURALIST 2021. [DOI: 10.3398/064.081.0413] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Affiliation(s)
| | - Eric J. Billman
- Department of Biology, Brigham Young University–Idaho, Rexburg, ID
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Hasegawa R, Koizumi I. Relative importance of host‐dependent versus physical environmental characteristics affecting the distribution of an ectoparasitic copepod infecting the mouth cavity of stream salmonid. Ecol Res 2021. [DOI: 10.1111/1440-1703.12262] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Ryota Hasegawa
- Graduate School of Environmental Science Hokkaido University Sapporo Japan
| | - Itsuro Koizumi
- Graduate School of Environmental Science Hokkaido University Sapporo Japan
- Faculty of Environmental Earth Science Hokkaido University Sapporo Japan
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White CFH, Gray MA, Kidd KA, Duffy MS, Lento J, Monk WA. Prevalence and Intensity of Salmincola edwardsii in Brook Trout in Northwest New Brunswick, Canada. JOURNAL OF AQUATIC ANIMAL HEALTH 2020; 32:11-20. [PMID: 31965614 DOI: 10.1002/aah.10091] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/14/2019] [Accepted: 09/17/2019] [Indexed: 06/10/2023]
Abstract
Parasites can compromise the health and fitness of individual fish, and it is important to generate baseline information that can then be used to document changes in the abundance and distribution of potentially pathogenic parasites. The ectoparasitic copepod Salmincola edwardsii was assessed with respect to prevalence (percentage of infected fish per site), infection intensity (number of parasites per infected fish), and attachment location on Brook Trout Salvelinus fontinalis in northwest New Brunswick, Canada. Ten sample sites were assessed, with six sites on two streams in the Quisibis River basin and four sites on three streams in the Restigouche River basin. Parasite species identity was supported by 100% sequence identity with S. edwardsii in a variable region within 28S rDNA. The prevalence of fish infected per site ranged from 19.0% to 79.6%, with an overall prevalence of 48.5 ± 19.1% (mean ± SD) per site. Mean infection intensity was 1.5 ± 0.9 copepods/fish (range = 1-7), with parasites almost exclusively surrounding the dorsal fin and/or adipose fin (97.6%). There was no influence of trout age-class on parasite prevalence. Some fish presented with fin erosion at the site of parasite attachment (12.5%), and 6.2% also presented with hyperplastic skin lesions where no parasites were observed, that could be misinterpreted as secondary bacterial or fungal infections. Skin and fin damage were significantly more common when fish were infected with three or more individual parasites. The pathogenic potential of this parasite makes its presence noteworthy as a risk to salmonids that are both recreationally and ecologically important.
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Affiliation(s)
- Carson F H White
- Canadian Rivers Institute, University of New Brunswick, Fredericton, New Brunswick, E3B 5A3, Canada
- Faculty of Forestry and Environmental Management, University of New Brunswick, Fredericton, New Brunswick, E3B 5A3, Canada
| | - Michelle A Gray
- Canadian Rivers Institute, University of New Brunswick, Fredericton, New Brunswick, E3B 5A3, Canada
- Faculty of Forestry and Environmental Management, University of New Brunswick, Fredericton, New Brunswick, E3B 5A3, Canada
| | - Karen A Kidd
- Department of Biology and School of Geography and Earth Sciences, McMaster University, Hamilton, Ontario, L8S 4K1, Canada
- Canadian Rivers Institute, University of New Brunswick, Saint John, New Brunswick, E2L 4L5, Canada
| | - Michael S Duffy
- Canadian Rivers Institute, University of New Brunswick, Fredericton, New Brunswick, E3B 5A3, Canada
- Department of Biology, University of New Brunswick, Fredericton, New Brunswick, E3B 5A3, Canada
| | - Jennifer Lento
- Canadian Rivers Institute, University of New Brunswick, Fredericton, New Brunswick, E3B 5A3, Canada
- Department of Biology, University of New Brunswick, Fredericton, New Brunswick, E3B 5A3, Canada
| | - Wendy A Monk
- Environment and Climate Change Canada at Canadian Rivers Institute, Faculty of Forestry and Environmental Management, University of New Brunswick, Fredericton, New Brunswick, E3B 5A3, Canada
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