Cell Survival Computation via the Generalized Stochastic Microdosimetric Model (GSM2); Part I: The Theoretical Framework

A biological optimization method for carbon therapy via iterative Jacobian-based linearization

Objective.Carbon ion radiotherapy (CIRT) can provide higher biological effectiveness and cause more damage to cancer cells compared to photon or proton radiotherapy, especially for radio-resistant tumors. The optimization of biological dose is essential for CIRT, to achieve the desirable tumoricidal dose while mitigating biological damage to normal tissues and organs at risk (OAR). However, the biological optimization for CIRT is mathematically challenging, due to the nonlinear nature of biological dose model, which can lead to computational inaccuracy and inefficiency. This work will develop an accurate and efficient biological optimization method for CIRT.Approach.The proposed method is called iterative Jacobian-based linearization (IJL). In IJL, the biological dose is modeled as the product of the physical dose and relative biological effect, which is based on the linear-quadratic model via the local effect model in this work, and the optimization objective consists of dose-volume histogram based biological dose objectives within clinical target volume and OAR. The optimization algorithm for IJL is through iterative convex relaxation, in which the nonlinear biological dose is iteratively linearized using Jacobian-based approximations and the linear subproblems are solved using alternating direction method of multipliers. To compare with IJL, the limited-memory quasi-Newton (QN) method (limited-memory version) is developed that directly solves the same nonlinear biological optimization problem.Main results.Compared to the QN, IJL demonstrated superior plan accuracy, e.g. better OAR sparing with the reduction of biological dose in the CTV-surrounding volume (PTV1cm) to 89.7%, 95.0%, 88.3% for brain, lung, and abdomen, respectively; IJL also had higher computational efficiency, with approximately 1/10 the computational time per iteration and continuously decreasing objectives (while being stagnated for QN after certain number of iterations).Significance.A novel optimization algorithm, IJL, incorporating iterative linearization of biological dose, is proposed to accurately and efficiently solve the biological optimization problem for CIRT. It demonstrates superior plan accuracy and computational efficiency compared to the direct nonlinear QN optimization method.

Cell Survival Computation via the Generalized Stochastic Microdosimetric Model (GSM2); Part II: Numerical Results

In the present paper we numerically investigate, using Monte Carlo simulation, the theoretical results predicted by the Generalized Stochastic Microdosimetric Model (GSM2), as shown in the published companion paper. Taking advantage of the particle irradiation data ensemble (PIDE) dataset, we calculated GSM2 biological parameters of human salivary gland (HSG) and V79 cell lines. Further, exploiting the TOPAS-microdosimetric extension, we simulated the microdosimetric spectra of different radiation fields of therapeutic interest generated by four different ions (protons, helium-4, carbon-12 and oxygen-16) each at three different residual ranges. We investigated the properties of the initial damage distributions as well as the cell survival curve predicted by GSM2, focusing especially on the non-Poissonian effects naturally included in the model. GSM2 successfully computed cell survival curves, accurately describing experimental behavior even under challenging LET and dose conditions.

A spatial measure-valued model for radiation-induced DNA damage kinetics and repair under protracted irradiation condition

In the present work, we develop a general spatial stochastic model to describe the formation and repair of radiation-induced DNA damage. The model is described mathematically as a measure-valued particle-based stochastic system and extends in several directions the model developed in Cordoni et al. (Phys Rev E 103:012412, 2021; Int J Radiat Biol 1-16, 2022a; Radiat Res 197:218-232, 2022b). In this new spatial formulation, radiation-induced DNA damage in the cell nucleus can undergo different pathways to either repair or lead to cell inactivation. The main novelty of the work is to rigorously define a spatial model that considers the pairwise interaction of lesions and continuous protracted irradiation. The former is relevant from a biological point of view as clustered lesions are less likely to be repaired, leading to cell inactivation. The latter instead describes the effects of a continuous radiation field on biological tissue. We prove the existence and uniqueness of a solution to the above stochastic systems, characterizing its probabilistic properties. We further couple the model describing the biological system to a set of reaction-diffusion equations with random discontinuity that model the chemical environment. At last, we study the large system limit of the process. The developed model can be applied to different contexts, with radiotherapy and space radioprotection being the most relevant. Further, the biochemical system derived can play a crucial role in understanding an extremely promising novel radiotherapy treatment modality, named in the community FLASH radiotherapy, whose mechanism is today largely unknown.

On the Emergence of the Deviation from a Poisson Law in Stochastic Mathematical Models for Radiation-Induced DNA Damage: A System Size Expansion

In this paper, we study the system size expansion of a stochastic model for radiation-induced DNA damage kinetics and repair. In particular, we characterize both the macroscopic deterministic limit and the fluctuation around it. We further show that such fluctuations are Gaussian-distributed. In deriving such results, we provide further insights into the relationship between stochastic and deterministic mathematical models for radiation-induced DNA damage repair. Specifically, we demonstrate how the governing deterministic equations commonly employed in the field arise naturally within the stochastic framework as a macroscopic limit. Additionally, by examining the fluctuations around this macroscopic limit, we uncover deviations from a Poissonian behavior driven by interactions and clustering among DNA damages. Although such behaviors have been empirically observed, our derived results represent the first rigorous derivation that incorporates these deviations from a Poissonian distribution within a mathematical model, eliminating the need for specific ad hoc corrections.

MINAS TIRITH: a new tool for simulating radiation-induced DNA damage at the cell population level

Objective. The mechanisms of radiation-induced DNA damage can be understood via the fundamental acquisition of knowledge through a combination of experiments and modeling. Currently, most biological experiments are performed by irradiating an entire cell population, whereas modeling of radiation-induced effects is usually performed via Monte Carlo simulations with track structure codes coupled to realistic DNA geometries of a single-cell nucleus. However, the difference in scale between the two methods hinders a direct comparison because the dose distribution in the cell population is not necessarily uniform owing to the stochastic nature of the energy deposition. Thus, this study proposed the MINAS TIRITH tool to model the distribution of radiation-induced DNA damage in a cell population.Approach. The proposed method is based on precomputed databases of microdosimetric parameters and DNA damage distributions generated using the Geant4-DNA Monte Carlo Toolkit. First, a specific energyzwas assigned to each cell of an irradiated population for a particular absorbed doseDabs,following microdosimetric formalism. Then, each cell was assigned a realistic number of DNA damage events according to the specific energyz,respecting the stochastic character of its occurrence.Main results. This study validated the MINAS TIRITH tool by comparing its results with those obtained using the Geant4-DNA track structure code and a Geant4-DNA based simulation chain for DNA damage calculation. The different elements of comparison indicated consistency between MINAS TIRITH and the Monte Carlo simulation in case of the dose distribution in the population and the calculation of the amount of DNA damage.Significance. MINAS TIRITH is a new approach for the calculation of radiation-induced DNA damage at the cell population level that facilitates reasonable simulation times compared to those obtained with track structure codes. Moreover, this tool enables a more direct comparison between modeling and biological experimentation.

Multiple levels of stochasticity accounted for in different radiation biophysical models: from physics to biology

PURPOSE

In the present paper we investigate how some stochastic effects are included in a class of radiobiological models with particular emphasis on how such randomnesses reflect into the predicted cell survival curve.

MATERIALS AND METHODS

We consider four different models, namely the Generalized Stochastic Microdosimetric Model GSM², in its original full form, the Dirac GSM² the Poisson GSM² and the Repair-Misrepair Model (RMR). While GSM² and the RMR models are known in literature, the Dirac and the Poisson GSM²  have been newly introduced in this work. We further numerically investigate via Monte Carlo simulation of four different particle beams, how the proposed stochastic approximations reflect into the predicted survival curves. To achieve these results, we consider different ion species at energies of interest for therapeutic applications, also including a mixed field scenario.

RESULTS

We show how the Dirac GSM², the Poisson GSM² and the RMR can be obtained from the GSM² under suitable approximations on the stochasticity considered. We analytically derive the cell survival curve predicted by the four models, characterizing rigorously the high and low dose limits. We further study how the theoretical findings emerge also using Monte Carlo numerical simulations.

CONCLUSIONS

We show how different models include different levels of stochasticity in the description of cellular response to radiation. This translates into different cell survival predictions depending on the radiation quality.