Aboveground biomass mapping of African forest mosaics using canopy texture analysis: toward a regional approach

Forest Aboveground Biomass Estimation and Mapping through High-Resolution Optical Satellite Imagery—A Literature Review

This paper provides a comprehensive literature review on forest aboveground biomass (AGB) estimation and mapping through high-resolution optical satellite imagery (≤5 m spatial resolution). Based on the literature review, 44 peer-reviewed journal articles were published in 15 years (2004–2019). Twenty-one studies were conducted in Asia, eight in North America and Africa, five in South America, and four in Europe. This review article gives a glance at the published methodologies for AGB prediction modeling and validation. The literature review suggested that, along with the integration of other sensors, QuickBird, WorldView-2, and IKONOS satellite images were most widely used for AGB estimations, with higher estimation accuracies. All studies were grouped into six satellite-derived independent variables, including tree crown, image textures, tree shadow fraction, canopy height, vegetation indices, and multiple variables. Using these satellite-derived independent variables, most of the studies used linear regression (41%), while 30% used linear multiple regression and 18% used non-linear (machine learning) regression, while very few (11%) studies used non-linear (multiple and exponential) regression for estimating AGB. In the context of global forest AGB estimations and monitoring, the advantages, strengths, and limitations were discussed to achieve better accuracy and transparency towards the performance-based payment mechanism of the REDD+ program. Apart from technical limitations, we realized that very few studies talked about real-time monitoring of AGB or quantifying AGB change, a dimension that needs exploration.

Approaches of Satellite Remote Sensing for the Assessment of Above-Ground Biomass across Tropical Forests: Pan-tropical to National Scales

Tropical forests are acknowledged for providing important ecosystem services and are renowned as “the lungs of the planet Earth” due to their role in the exchange of gasses—particularly inhaling CO2 and breathing out O2—within the atmosphere. Overall, the forests provide 50% of the total plant biomass of the Earth, which accounts for 450–650 PgC globally. Understanding and accurate estimates of tropical forest biomass stocks are imperative in ascertaining the contribution of the tropical forests in global carbon dynamics. This article provides a review of remote-sensing-based approaches for the assessment of above-ground biomass (AGB) across the tropical forests (global to national scales), summarizes the current estimate of pan-tropical AGB, and discusses major advancements in remote-sensing-based approaches for AGB mapping. The review is based on the journal papers, books and internet resources during the 1980s to 2020. Over the past 10 years, a myriad of research has been carried out to develop methods of estimating AGB by integrating different remote sensing datasets at varying spatial scales. Relationships of biomass with canopy height and other structural attributes have developed a new paradigm of pan-tropical or global AGB estimation from space-borne satellite remote sensing. Uncertainties in mapping tropical forest cover and/or forest cover change are related to spatial resolution; definition adapted for ‘forest’ classification; the frequency of available images; cloud covers; time steps used to map forest cover change and post-deforestation land cover land use (LCLU)-type mapping. The integration of products derived from recent Synthetic Aperture Radar (SAR) and Light Detection and Ranging (LiDAR) satellite missions with conventional optical satellite images has strong potential to overcome most of these uncertainties for recent or future biomass estimates. However, it will remain a challenging task to map reference biomass stock in the 1980s and 1990s and consequently to accurately quantify the loss or gain in forest cover over the periods. Aside from these limitations, the estimation of biomass and carbon balance can be enhanced by taking account of post-deforestation forest recovery and LCLU type; land-use history; diversity of forest being recovered; variations in physical attributes of plants (e.g., tree height; diameter; and canopy spread); environmental constraints; abundance and mortalities of trees; and the age of secondary forests. New methods should consider peak carbon sink time while developing carbon sequestration models for intact or old-growth tropical forests as well as the carbon sequestration capacity of recovering forest with varying levels of floristic diversity.

Unmanned Aerial System and Machine Learning Techniques Help to Detect Dead Woody Components in a Tropical Dry Forest

Background and Objectives: Increased frequency and intensity of drought events are predicted to occur throughout the world because of climate change. These extreme climate events result in higher tree mortality and fraction of dead woody components, phenomena that are currently being reported worldwide as critical indicators of the impacts of climate change on forest diversity and function. In this paper, we assess the accuracy and processing times of ten machine learning (ML) techniques, applied to multispectral unmanned aerial vehicle (UAV) data to detect dead canopy woody components. Materials and Methods: This work was conducted on five secondary dry forest plots located at the Santa Rosa National Park Environmental Monitoring Super Site, Costa Rica. Results: The coverage of dead woody components at the selected secondary dry forest plots was estimated to range from 4.8% to 16.1%, with no differences between the successional stages. Of the ten ML techniques, the support vector machine with radial kernel (SVMR) and random forests (RF) provided the highest accuracies (0.982 vs. 0.98, respectively). Of these two ML algorithms, the processing time of SVMR was longer than the processing time of RF (8735.64 s vs. 989 s). Conclusions: Our results demonstrate that it is feasible to detect and quantify dead woody components, such as dead stands and fallen trees, using a combination of high-resolution UAV data and ML algorithms. Using this technology, accuracy values higher than 95% were achieved. However, it is important to account for a series of factors, such as the optimization of the tuning parameters of the ML algorithms, the environmental conditions and the time of the UAV data acquisition.

A map of African humid tropical forest aboveground biomass derived from management inventories

Forest biomass is key in Earth carbon cycle and climate system, and thus under intense scrutiny in the context of international climate change mitigation initiatives (e.g. REDD+). In tropical forests, the spatial distribution of aboveground biomass (AGB) remains, however, highly uncertain. There is increasing recognition that progress is strongly limited by the lack of field observations over large and remote areas. Here, we introduce the Congo basin Forests AGB (CoFor-AGB) dataset that contains AGB estimations and associated uncertainty for 59,857 1-km pixels aggregated from nearly 100,000 ha of in situ forest management inventories for the 2000 - early 2010s period in five central African countries. A comprehensive error propagation scheme suggests that the uncertainty on AGB estimations derived from c. 0.5-ha inventory plots (8.6-15.0%) is only moderately higher than the error obtained from scientific sampling plots (8.3%). CoFor-AGB provides the first large scale view of forest AGB spatial variation from field data in central Africa, the second largest continuous tropical forest domain of the world.

Challenges in Estimating Tropical Forest Canopy Height from Planet Dove Imagery

Monitoring tropical forests using spaceborne and airborne remote sensing capabilities is important for informing environmental policies and conservation actions. Developing large-scale machine learning estimation models of forest structure is instrumental in bridging the gap between retrospective analysis and near-real-time monitoring. However, most approaches use moderate spatial resolution satellite data with limited capabilities of frequent updating. Here, we take advantage of the high spatial and temporal resolutions of Planet Dove images and aim to automatically estimate top-of-canopy height (TCH) for the biologically diverse country of Peru from satellite imagery at 1 ha spatial resolution by building a model that associates Planet Dove textural features with airborne light detection and ranging (LiDAR) measurements of TCH. We use and modify features derived from Fourier textural ordination (FOTO) of Planet Dove images using spectral projection and train a gradient boosted regression for TCH estimation. We discuss the technical and scientific challenges involved in the generation of reliable mechanisms for estimating TCH from Planet Dove satellite image spectral and textural features. Our developed software toolchain is a robust and generalizable regression model that provides a root mean square error (RMSE) of 4.36 m for Peru. This represents a helpful advancement towards better monitoring of tropical forests and improves efforts in reducing emissions from deforestation and forest degradation (REDD+), an important climate change mitigation approach.

Monitoring tropical forest carbon stocks and emissions using Planet satellite data

Tropical forests are crucial for mitigating climate change, but many forests continue to be driven from carbon sinks to sources through human activities. To support more sustainable forest uses, we need to measure and monitor carbon stocks and emissions at high spatial and temporal resolution. We developed the first large-scale very high-resolution map of aboveground carbon stocks and emissions for the country of Peru by combining 6.7 million hectares of airborne LiDAR measurements of top-of-canopy height with thousands of Planet Dove satellite images into a random forest machine learning regression workflow, obtaining an R² of 0.70 and RMSE of 25.38 Mg C ha⁻¹ for the nationwide estimation of aboveground carbon density (ACD). The diverse ecosystems of Peru harbor 6.928 Pg C, of which only 2.9 Pg C are found in protected areas or their buffers. We found significant carbon emissions between 2012 and 2017 in areas aggressively affected by oil palm and cacao plantations, agricultural and urban expansions or illegal gold mining. Creating such a cost-effective and spatially explicit indicators of aboveground carbon stocks and emissions for tropical countries will serve as a transformative tool to quantify the climate change mitigation services that forests provide.

The Potential of High Resolution (5 m) RapidEye Optical Data to Estimate Above Ground Biomass at the National Level over Tanzania

In this paper, we review the potential of high resolution optical satellite data to reduce the significant investment in resources required for a national field survey for producing estimates of above ground biomass (AGB). We use 5 m resolution RapidEye optical data to support a country wide biomass inventory with the objective of bringing to the attention of the traditional forestry sector the advantages of integrating remote sensing data in the planning and execution of field data acquisition. We analysed the relationship between AGB estimates from a subset of the national survey field plot data collected by the Tanzania Forest Service, with a set of remote sensing biophysical parameters extracted from a sample of fine spatial (5 m) resolution RapidEye images using a regression estimator. We processed RapidEye data using image segmentation for 76 sample sites each of 20 km by 20 km (covering 2.3% of the land area of the country) to image objects of 1 ha. We extracted reflectance and texture information from those objects which overlapped with the field plot data and tested correlations between the two using four different models: Two models from inferential statistics and two models from machine learning. The best results were found using the random forests algorithm (R2 = 0.69). The most important explicative factor extracted from the remote sensing data was the shadow index, measuring the absorption of light in the visible bands. The model was then applied to all image objects on the RapidEye images to obtain AGB for each of the 76 sample sites, which were then interpolated to estimate the AGB stock at the national scale. Using the relative efficiency measure, we assessed the improvement that the introduction of remote sensing data brings to obtain an AGB estimate at the national level, with the same precision as the full survey. The improvement in the precision of the estimate (by reducing its variance) resulted in a relative efficiency of 3.2. This demonstrates that the introduction of remote sensing data at this fine resolution can substantially reduce the number of field plots required, in this case threefold.

Assessing the Trade-Offs of SPOT7 Imagery for Monitoring Natural Forest Canopy Intactness

Natural and human-induced disturbances influence the biodiversity and functionality of forest ecosystems. Regular, repeated assessments of canopy intactness are essential to map site-specific forest disturbance and recovery patterns, an essential requirement for forest monitoring and management. However, accessibility to images required for this practice, uncertainty around the levels of accuracy achieved with images of different resolution, and the affordability of the practice challenges its application in many developing regions. This study aimed to compare the accuracy of forest gap detection (in subtropical forests) achieved with lower-resolution (SPOT7 5 m) and higher-resolution (SPOT7 1.5 m) pan-sharpened imagery. Additionally, the Normalised Difference Vegetation Index (NDVI) and Synthetic Aperture Radar (SAR) were compared in terms of their ability to increase the accuracy of this detection when used in conjunction with both high and low resolution imagery. Results indicate that the SPOT7 1.5 m imagery produced an overall accuracy of 77.78% and a ϰ coefficient of 0.66 compared with the 69.44% accuracy and the 0.59 ϰ coefficient achieved with the SPOT7 5 m imagery. Computing image texture analysis within the Random Forest classifier (RF) framework increased classification accuracies to 75.00% for the SPOT 5 m and 86.11% for the SPOT7 1.5 m imagery, validating the usefulness of texture analysis. Variable importance was used to identify wavebands and texture-derived variables that were the most effective in discriminating canopy gaps from intact canopy. In this regard, near infrared, NDVI, SAR, contrast, mean, entropy and second moment were the most important. Collectively the results indicate that the approach adopted in this study, i.e., the use of SPOT7 1.5 m imagery in conjunction with image texture analysis and variable importance, can be used to accurately discriminate between canopy gaps and intact canopy, making it a cost-effective spatial approach for monitoring and managing natural forests.

Spatial Distribution of Carbon Stored in Forests of the Democratic Republic of Congo

National forest inventories in tropical regions are sparse and have large uncertainty in capturing the physiographical variations of forest carbon across landscapes. Here, we produce for the first time the spatial patterns of carbon stored in forests of Democratic Republic of Congo (DRC) by using airborne LiDAR inventory of more than 432,000 ha of forests based on a designed probability sampling methodology. The LiDAR mean top canopy height measurements were trained to develop an unbiased carbon estimator by using 92 1-ha ground plots distributed across key forest types in DRC. LiDAR samples provided estimates of mean and uncertainty of aboveground carbon density at provincial scales and were combined with optical and radar satellite imagery in a machine learning algorithm to map forest height and carbon density over the entire country. By using the forest definition of DRC, we found a total of 23.3 ± 1.6 GtC carbon with a mean carbon density of 140 ± 9 MgC ha^-1 in the aboveground and belowground live trees. The probability based LiDAR samples capture variations of structure and carbon across edaphic and climate conditions, and provide an alternative approach to national ground inventory for efficient and precise assessment of forest carbon resources for emission reduction (ER) programs.

Incorporating Canopy Cover for Airborne-Derived Assessments of Forest Biomass in the Tropical Forests of Cambodia

This research examines the role of canopy cover in influencing above ground biomass (AGB) dynamics of an open canopied forest and evaluates the efficacy of individual-based and plot-scale height metrics in predicting AGB variation in the tropical forests of Angkor Thom, Cambodia. The AGB was modeled by including canopy cover from aerial imagery alongside with the two different canopy vertical height metrics derived from LiDAR; the plot average of maximum tree height (Max_CH) of individual trees, and the top of the canopy height (TCH). Two different statistical approaches, log-log ordinary least squares (OLS) and support vector regression (SVR), were used to model AGB variation in the study area. Ten different AGB models were developed using different combinations of airborne predictor variables. It was discovered that the inclusion of canopy cover estimates considerably improved the performance of AGB models for our study area. The most robust model was log-log OLS model comprising of canopy cover only (r = 0.87; RMSE = 42.8 Mg/ha). Other models that approximated field AGB closely included both Max_CH and canopy cover (r = 0.86, RMSE = 44.2 Mg/ha for SVR; and, r = 0.84, RMSE = 47.7 Mg/ha for log-log OLS). Hence, canopy cover should be included when modeling the AGB of open-canopied tropical forests.

Wood Specific Gravity Variations and Biomass of Central African Tree Species: The Simple Choice of the Outer Wood

CONTEXT

Wood specific gravity is a key element in tropical forest ecology. It integrates many aspects of tree mechanical properties and functioning and is an important predictor of tree biomass. Wood specific gravity varies widely among and within species and also within individual trees. Notably, contrasted patterns of radial variation of wood specific gravity have been demonstrated and related to regeneration guilds (light demanding vs. shade-bearing). However, although being repeatedly invoked as a potential source of error when estimating the biomass of trees, both intraspecific and radial variations remain little studied. In this study we characterized detailed pith-to-bark wood specific gravity profiles among contrasted species prominently contributing to the biomass of the forest, i.e., the dominant species, and we quantified the consequences of such variations on the biomass.

METHODS

Radial profiles of wood density at 8% moisture content were compiled for 14 dominant species in the Democratic Republic of Congo, adapting a unique 3D X-ray scanning technique at very high spatial resolution on core samples. Mean wood density estimates were validated by water displacement measurements. Wood density profiles were converted to wood specific gravity and linear mixed models were used to decompose the radial variance. Potential errors in biomass estimation were assessed by comparing the biomass estimated from the wood specific gravity measured from pith-to-bark profiles, from global repositories, and from partial information (outer wood or inner wood).

RESULTS

Wood specific gravity profiles from pith-to-bark presented positive, neutral and negative trends. Positive trends mainly characterized light-demanding species, increasing up to 1.8 g.cm-3 per meter for Piptadeniastrum africanum, and negative trends characterized shade-bearing species, decreasing up to 1 g.cm-3 per meter for Strombosia pustulata. The linear mixed model showed the greater part of wood specific gravity variance was explained by species only (45%) followed by a redundant part between species and regeneration guilds (36%). Despite substantial variation in wood specific gravity profiles among species and regeneration guilds, we found that values from the outer wood were strongly correlated to values from the whole profile, without any significant bias. In addition, we found that wood specific gravity from the DRYAD global repository may strongly differ depending on the species (up to 40% for Dialium pachyphyllum).

MAIN CONCLUSION

Therefore, when estimating forest biomass in specific sites, we recommend the systematic collection of outer wood samples on dominant species. This should prevent the main errors in biomass estimations resulting from wood specific gravity and allow for the collection of new information to explore the intraspecific variation of mechanical properties of trees.

Spatial Structure of Above-Ground Biomass Limits Accuracy of Carbon Mapping in Rainforest but Large Scale Forest Inventories Can Help to Overcome

Precise mapping of above-ground biomass (AGB) is a major challenge for the success of REDD+ processes in tropical rainforest. The usual mapping methods are based on two hypotheses: a large and long-ranged spatial autocorrelation and a strong environment influence at the regional scale. However, there are no studies of the spatial structure of AGB at the landscapes scale to support these assumptions. We studied spatial variation in AGB at various scales using two large forest inventories conducted in French Guiana. The dataset comprised 2507 plots (0.4 to 0.5 ha) of undisturbed rainforest distributed over the whole region. After checking the uncertainties of estimates obtained from these data, we used half of the dataset to develop explicit predictive models including spatial and environmental effects and tested the accuracy of the resulting maps according to their resolution using the rest of the data. Forest inventories provided accurate AGB estimates at the plot scale, for a mean of 325 Mg.ha^-1. They revealed high local variability combined with a weak autocorrelation up to distances of no more than10 km. Environmental variables accounted for a minor part of spatial variation. Accuracy of the best model including spatial effects was 90 Mg.ha^-1 at plot scale but coarse graining up to 2-km resolution allowed mapping AGB with accuracy lower than 50 Mg.ha^-1. Whatever the resolution, no agreement was found with available pan-tropical reference maps at all resolutions. We concluded that the combined weak autocorrelation and weak environmental effect limit AGB maps accuracy in rainforest, and that a trade-off has to be found between spatial resolution and effective accuracy until adequate “wall-to-wall” remote sensing signals provide reliable AGB predictions. Waiting for this, using large forest inventories with low sampling rate (<0.5%) may be an efficient way to increase the global coverage of AGB maps with acceptable accuracy at kilometric resolution.

Seeing Central African forests through their largest trees

Large tropical trees and a few dominant species were recently identified as the main structuring elements of tropical forests. However, such result did not translate yet into quantitative approaches which are essential to understand, predict and monitor forest functions and composition over large, often poorly accessible territories. Here we show that the above-ground biomass (AGB) of the whole forest can be predicted from a few large trees and that the relationship is proved strikingly stable in 175 1-ha plots investigated across 8 sites spanning Central Africa. We designed a generic model predicting AGB with an error of 14% when based on only 5% of the stems, which points to universality in forest structural properties. For the first time in Africa, we identified some dominant species that disproportionally contribute to forest AGB with 1.5% of recorded species accounting for over 50% of the stock of AGB. Consequently, focusing on large trees and dominant species provides precise information on the whole forest stand. This offers new perspectives for understanding the functioning of tropical forests and opens new doors for the development of innovative monitoring strategies.