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Hendry MJ, Kirk L, Warner J, Shaw S, Peyton BM, Schmeling E, Barbour SL. Selenate bioreduction in a large in situ field trial. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 933:172869. [PMID: 38697548 DOI: 10.1016/j.scitotenv.2024.172869] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/30/2023] [Revised: 04/06/2024] [Accepted: 04/27/2024] [Indexed: 05/05/2024]
Abstract
Removing selenium (Se) from mine effluent is a common challenge. A long-term, in situ experiment was conducted to bioremediate large volumes (up to 7500 mc d-1) of Se(VI)-contaminated water (mean 87 μg L-1) by injecting the water into a saturated waste rock fill (SRF) at a coal mining operation in Elk Valley, British Columbia, Canada. To stimulate/maintain biofilm growth in the SRF, labile organic carbon (methanol) and nutrients were added to the water prior to its injection. A conservative tracer (Br-) was also added to track the migration of injected water across the SRF, identify wells with minimal dilution and used to quantify the extent of bioreduction. The evolution of the Se species through the SRF was monitored in time and space for 201 d. Selenium concentrations of <3.8 μg L-1 were attained in monitoring wells located 38 m from the injection wells after 114 to 141 d of operation. Concentrations of Se species in water samples from complementary long-term (351-498 d) column experiments using influent Se(VI) concentrations of 1.0 mg L-1 were consistent with the results of the in situ experiment. Solid samples collected at the completion of the column experiments confirmed the presence of indigenous Se-reducing bacteria and that the sequestered Se was present as insoluble Se(0), likely in Se-S ring compounds. Based on the success of this ongoing bioremediation experiment, this technology is being applied at other mine sites.
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Affiliation(s)
- M Jim Hendry
- Department of Geological Sciences, University of Saskatchewan, 114 Science Place, Saskatoon, SK S7N 5E2, Canada.
| | - Lisa Kirk
- Enviromin, Inc., 524 Professional Drive, Bozeman, MT 59715, USA.
| | - Jeff Warner
- Canadian Light Source Inc., University of Saskatchewan, 101 Perimeter Road, Saskatoon, SK S7N 0X4, Canada.
| | - Shannon Shaw
- SRK Consulting, 1066 W. Hastings St., Vancouver, BC V6E 3X2, Canada.
| | - Brent M Peyton
- Department of Chemical and Biological Engineering, Center for Biofilm Engineering, 305 Cobleigh Hall, Montana State University, Bozeman, MT, USA.
| | - Erin Schmeling
- Department of Geological Sciences, University of Saskatchewan, 114 Science Place, Saskatoon, SK S7N 5E2, Canada.
| | - S Lee Barbour
- Department of Civil and Geological Engineering, University of Saskatchewan, 57 Campus Drive, Saskatoon, SK S7N 5A9, Canada
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Chauviat A, Meyer T, Favre-Bonté S. Versatility of Stenotrophomonas maltophilia: Ecological roles of RND efflux pumps. Heliyon 2023; 9:e14639. [PMID: 37089375 PMCID: PMC10113797 DOI: 10.1016/j.heliyon.2023.e14639] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2023] [Revised: 03/13/2023] [Accepted: 03/14/2023] [Indexed: 03/30/2023] Open
Abstract
S. maltophilia is a widely distributed bacterium found in natural, anthropized and clinical environments. The genome of this opportunistic pathogen of environmental origin includes a large number of genes encoding RND efflux pumps independently of the clinical or environmental origin of the strains. These pumps have been historically associated with the uptake of antibiotics and clinically relevant molecules because they confer resistance to many antibiotics. However, considering the environmental origin of S. maltophilia, the ecological role of these pumps needs to be clarified. RND efflux systems are highly conserved within bacteria and encountered both in pathogenic and non-pathogenic species. Moreover, their evolutionary origin, conservation and multiple copies in bacterial genomes suggest a primordial role in cellular functions and environmental adaptation. This review is aimed at elucidating the ecological role of S. maltophilia RND efflux pumps in the environmental context and providing an exhaustive description of the environmental niches of S. maltophilia. By looking at the substrates and functions of the pumps, we propose different involvements and roles according to the adaptation of the bacterium to various niches. We highlight that i°) regulatory mechanisms and inducer molecules help to understand the conditions leading to their expression, and ii°) association and functional redundancy of RND pumps and other efflux systems demonstrate their complex role within S. maltophilia cells. These observations emphasize that RND efflux pumps play a role in the versatility of S. maltophilia.
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Akimbekov NS, Digel I, Tastambek KT, Marat AK, Turaliyeva MA, Kaiyrmanova GK. Biotechnology of Microorganisms from Coal Environments: From Environmental Remediation to Energy Production. BIOLOGY 2022; 11:biology11091306. [PMID: 36138784 PMCID: PMC9495453 DOI: 10.3390/biology11091306] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/25/2022] [Revised: 08/31/2022] [Accepted: 08/31/2022] [Indexed: 11/22/2022]
Abstract
Simple Summary Despite the wide perception that coal environments are extreme habitats, they harbor resident microbial communities. Coal-associated habitats, such as coal mine areas/drainages, spoil heaps, and coalbeds, are defined as complex ecosystems with indigenous microbial groups and native microecological networks. Resident microorganisms possess rich functional potentials and profoundly shape a range of biotechnological processes in the coal industry, from production to remediation. Abstract It was generally believed that coal sources are not favorable as live-in habitats for microorganisms due to their recalcitrant chemical nature and negligible decomposition. However, accumulating evidence has revealed the presence of diverse microbial groups in coal environments and their significant metabolic role in coal biogeochemical dynamics and ecosystem functioning. The high oxygen content, organic fractions, and lignin-like structures of lower-rank coals may provide effective means for microbial attack, still representing a greatly unexplored frontier in microbiology. Coal degradation/conversion technology by native bacterial and fungal species has great potential in agricultural development, chemical industry production, and environmental rehabilitation. Furthermore, native microalgal species can offer a sustainable energy source and an excellent bioremediation strategy applicable to coal spill/seam waters. Additionally, the measures of the fate of the microbial community would serve as an indicator of restoration progress on post-coal-mining sites. This review puts forward a comprehensive vision of coal biodegradation and bioprocessing by microorganisms native to coal environments for determining their biotechnological potential and possible applications.
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Affiliation(s)
- Nuraly S. Akimbekov
- Department of Biotechnology, Al-Farabi Kazakh National University, Almaty 050040, Kazakhstan
- Correspondence:
| | - Ilya Digel
- Institute for Bioengineering, FH Aachen University of Applied Sciences, 52428 Jülich, Germany
| | - Kuanysh T. Tastambek
- Department of Fundamental Medicine, Al-Farabi Kazakh National University, Almaty 050040, Kazakhstan
- Department of Applied Biology, M. Kh. Dulaty Taraz Regional University, Taraz 080012, Kazakhstan
- Ecology Research Institute, Khoja Akhmet Yassawi International Kazakh-Turkish University, Turkistan 161200, Kazakhstan
| | - Adel K. Marat
- Department of Biotechnology, Al-Farabi Kazakh National University, Almaty 050040, Kazakhstan
| | - Moldir A. Turaliyeva
- Department of Biotechnology, M. Auezov South Kazakhstan University, Shymkent 160012, Kazakhstan
| | - Gulzhan K. Kaiyrmanova
- Department of Biotechnology, Al-Farabi Kazakh National University, Almaty 050040, Kazakhstan
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Ji Y, Wang YT. Se(VI) reduction by continuous-flow reactors packed with Shigella fergusonii strain TB42616 immobilized by Ca2+-alginate gel beads. Process Biochem 2020. [DOI: 10.1016/j.procbio.2019.11.031] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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Ji Y, Wang YT. Kinetic modeling of selenium reduction by a defined co-culture in batch reactors. Process Biochem 2019. [DOI: 10.1016/j.procbio.2019.08.006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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Extreme Environments and High-Level Bacterial Tellurite Resistance. Microorganisms 2019; 7:microorganisms7120601. [PMID: 31766694 PMCID: PMC6955997 DOI: 10.3390/microorganisms7120601] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2019] [Revised: 11/19/2019] [Accepted: 11/20/2019] [Indexed: 01/10/2023] Open
Abstract
Bacteria have long been known to possess resistance to the highly toxic oxyanion tellurite, most commonly though reduction to elemental tellurium. However, the majority of research has focused on the impact of this compound on microbes, namely E. coli, which have a very low level of resistance. Very little has been done regarding bacteria on the other end of the spectrum, with three to four orders of magnitude greater resistance than E. coli. With more focus on ecologically-friendly methods of pollutant removal, the use of bacteria for tellurite remediation, and possibly recovery, further highlights the importance of better understanding the effect on microbes, and approaches for resistance/reduction. The goal of this review is to compile current research on bacterial tellurite resistance, with a focus on high-level resistance by bacteria inhabiting extreme environments.
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Selenium reduction by a defined co-culture of Shigella fergusonii strain TB42616 and Pantoea vagans strain EWB32213-2. Bioprocess Biosyst Eng 2019; 42:1343-1351. [DOI: 10.1007/s00449-019-02134-5] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2019] [Accepted: 04/21/2019] [Indexed: 10/26/2022]
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Santini TC, Raudsepp M, Hamilton J, Nunn J. Extreme Geochemical Conditions and Dispersal Limitation Retard Primary Succession of Microbial Communities in Gold Tailings. Front Microbiol 2018; 9:2785. [PMID: 30546349 PMCID: PMC6279923 DOI: 10.3389/fmicb.2018.02785] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2018] [Accepted: 10/30/2018] [Indexed: 11/13/2022] Open
Abstract
Microbial community succession in tailings materials is poorly understood at present, and likely to be substantially different from similar processes in natural primary successional environments due to the unusual geochemical properties of tailings and the isolated design of tailings storage facilities. This is the first study to evaluate processes of primary succession in microbial communities colonizing unamended tailings, and compare the relative importance of stochastic (predominantly dust-borne dispersal) and deterministic (strong selection pressures from extreme geochemical properties) processes in governing community assembly rates and trajectories to those observed in natural environments. Dispersal-based recruitment required > 6 months to shift microbial community composition in unamended, field-weathered gold tailings; and in the absence of targeted inoculants, recruitment was dominated by salt- and alkali-tolerant species. In addition, cell numbers were less than 106 cells/g tailings until > 6 months after deposition. Laboratory experiments simulating microbial cell addition via dust revealed that high (>6 months' equivalent) dust addition rates were required to effect stabilization of microbial cell counts in tailings. In field-weathered tailings, topsoil addition during rehabilitation works exerted a double effect, acting as a microbial inoculant and correcting geochemical properties of tailings. However, microbial communities in rehabilitated tailings remained compositionally distinct from those of reference soils in surrounding environments. pH, water extractable Mg, and water extractable Fe emerged as major controls on microbial community composition in the field-weathered gold tailings. Overall, this study highlights the need for application of targeted microbial inoculants to accelerate rates of microbial community succession in tailings, which are limited primarily by slow dispersal due to physical and spatial isolation of tailings facilities from inoculant sources; and for geochemical properties of tailings to be amended to moderate values to encourage microbial community diversification and succession.
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Affiliation(s)
- Talitha C Santini
- School of Agriculture and Environment, The University of Western Australia, Crawley, WA, Australia.,School of Earth and Environmental Sciences, The University of Queensland, St Lucia, QLD, Australia
| | - Maija Raudsepp
- Department of Earth and Atmospheric Sciences, University of Alberta, Edmonton, AB, Canada
| | - Jessica Hamilton
- School of Earth and Environmental Sciences, The University of Queensland, St Lucia, QLD, Australia
| | - Jasmine Nunn
- School of Earth and Environmental Sciences, The University of Queensland, St Lucia, QLD, Australia
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LeBlanc KL, Kumkrong P, Mercier PHJ, Mester Z. Selenium analysis in waters. Part 2: Speciation methods. THE SCIENCE OF THE TOTAL ENVIRONMENT 2018; 640-641:1635-1651. [PMID: 29935780 DOI: 10.1016/j.scitotenv.2018.05.394] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/19/2018] [Revised: 05/25/2018] [Accepted: 05/31/2018] [Indexed: 06/08/2023]
Abstract
In aquatic ecosystems, there is often no correlation between the total concentration of selenium present in the water column and the toxic effects observed in that environment. This is due, in part, to the variation in the bioavailability of different selenium species to organisms at the base of the aquatic food chain. The first part of this review (Kumkrong et al., 2018) discusses regulatory framework and standard methodologies for selenium analysis in waters. In this second article, we are reviewing the state of speciation analysis and importance of speciation data for decision makers in industry and regulators. We look in detail at fractionation methods for speciation, including the popular selective sequential hydride generation. We examine advantages and limitations of these methods, in terms of achievable detection limits and interferences from other matrix species, as well as the potential to over- or under-estimate operationally-defined fractions based on the various conversion steps involved in fractionation processes. Additionally, we discuss methods of discrete speciation (through separation methods), their importance in analyzing individual selenium species, difficulties associated with their implementation, as well as ways to overcome these difficulties. We also provide a brief overview of biological treatment methods for the remediation of selenium-contaminated waters. We discuss the importance of selenium speciation in the application of these methods and their potential to actually increase the bioavailability of selenium despite decreasing its total waterborne concentration.
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Affiliation(s)
- Kelly L LeBlanc
- National Research Council Canada, 1200 Montreal Road, Ottawa, Ontario, Canada.
| | - Paramee Kumkrong
- National Research Council Canada, 1200 Montreal Road, Ottawa, Ontario, Canada
| | - Patrick H J Mercier
- National Research Council Canada, 1200 Montreal Road, Ottawa, Ontario, Canada
| | - Zoltán Mester
- National Research Council Canada, 1200 Montreal Road, Ottawa, Ontario, Canada
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Paredez JM, Mladenov N, Galkaduwa MB, Hettiarachchi GM, Kluitenberg GJ, Hutchinson SL. A soil column study to evaluate treatment of trace elements from saline industrial wastewater. WATER SCIENCE AND TECHNOLOGY : A JOURNAL OF THE INTERNATIONAL ASSOCIATION ON WATER POLLUTION RESEARCH 2017; 76:2698-2709. [PMID: 29168710 DOI: 10.2166/wst.2017.413] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Industrial wastewater from the flue gas desulfurization (FGD) process is characterized by the presence of trace elements of concern, such as selenium (Se) and boron (B) and relatively high salinity. To simulate treatment that FGD wastewater undergoes during transport through soils in subsurface treatment systems, a column study (140-d duration) was conducted with native Kansas soil and saline FGD wastewater, containing high Se and B concentrations (170 μg/L Se and 5.3 mg/L B) and negligible arsenic (As) concentration (∼1.2 μg/L As). Se, B, and As, and dissolved organic carbon concentrations and organic matter spectroscopic properties were measured in the influent and outflow. Influent Se concentrations were reduced by only ∼half in all treatments, and results suggest that Se sorption was inhibited by high salinity of the FGD wastewater. By contrast, relative concentrations (C/Co) of B in the outflow were typically <10%, suggesting that B sequestration may have been enhanced by higher salinity. Unexpected elevated As concentrations in the outflow (at >150 μg/L in the treatment with labile organic carbon addition) suggest that soils not previously known to be geogenic arsenic sources have the potential to release As to groundwater in the presence of high salinity wastewater and under reducing conditions.
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Affiliation(s)
- Jose M Paredez
- Department of Civil Engineering, Kansas State University, 2118 Fiedler Hall, Manhattan, KS 66506, USA
| | - Natalie Mladenov
- Department of Civil, Construction, and Environmental Engineering, San Diego State University, 5500 Campanile Drive, San Diego, CA 92182, USA E-mail:
| | - Madhubhashini B Galkaduwa
- Department of Agronomy, Kansas State University, Throckmorton Plant Sciences Center, 1712 Claflin Rd, Manhattan, KS 66506, USA
| | - Ganga M Hettiarachchi
- Department of Agronomy, Kansas State University, Throckmorton Plant Sciences Center, 1712 Claflin Rd, Manhattan, KS 66506, USA
| | - Gerard J Kluitenberg
- Department of Agronomy, Kansas State University, Throckmorton Plant Sciences Center, 1712 Claflin Rd, Manhattan, KS 66506, USA
| | - Stacy L Hutchinson
- Department of Biological and Agricultural Engineering, Kansas State University, Seaton Hall, 920 N. 17th St., Manhattan, KS 66506, USA
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Bajaj M, Eiche E, Neumann T, Winter J, Gallert C. Hazardous concentrations of selenium in soil and groundwater in North-West India. JOURNAL OF HAZARDOUS MATERIALS 2011; 189:640-6. [PMID: 21324586 DOI: 10.1016/j.jhazmat.2011.01.086] [Citation(s) in RCA: 88] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/29/2010] [Revised: 01/20/2011] [Accepted: 01/21/2011] [Indexed: 05/07/2023]
Abstract
Soil and groundwater samples were collected for bulk elemental analyses in particular for selenium (Se) concentrations from six agricultural sites located in states of Punjab and Haryana in North-West India. Toxic concentrations of Se (45-341 μg L(-1)) were present in groundwater (76 m deep) of Jainpur and Barwa villages in Punjab. Selenium enrichments were also found in top soil layers (0-15 cm) of Jainpur (2.3-11.6 mg kg(-1)) and Barwa (3.1 mg kg(-1)). Mineralogical analyses confirmed silicates and phyllosilicates as main components of these soils, also reflected by the high content of SiO(2) (40-62 wt.%), Al(2)O(3) (9-21 wt.%) and K(2)O (2.2-3.2 wt.%). Prevailing intensive irrigation practices in Punjab with Se enriched groundwater may be the cause of Se accumulation in soils. Sequential extraction revealed >50% Se bioavailability in Jainpur soils. Appearance of selenite was observed in some of the batch assays with soil slurries under reducing conditions. Although safe Se concentrations were found in Hisar, Haryana, yet high levels of As, Mo and U present in groundwater indicated its unsuitability for drinking purposes. Detailed biogeochemical studies of Se in sediments or groundwater of Punjab are not available so far; intensive investigations should be started for better understanding of the problem of Se toxicity.
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Affiliation(s)
- Mini Bajaj
- Institute of Biology for Engineers and Biotechnology of Wastewater, Am Fasanengarten, Karlsruhe Institute of Technology (KIT), 76131 Karlsruhe, Germany.
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Paauw A, Leverstein-van Hall MA, Verhoef J, Fluit AC. Evolution in quantum leaps: multiple combinatorial transfers of HPI and other genetic modules in Enterobacteriaceae. PLoS One 2010; 5:e8662. [PMID: 20084283 PMCID: PMC2801613 DOI: 10.1371/journal.pone.0008662] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2009] [Accepted: 12/09/2009] [Indexed: 11/19/2022] Open
Abstract
Horizontal gene transfer is a key step in the evolution of Enterobacteriaceae. By acquiring virulence determinants of foreign origin, commensals can evolve into pathogens. In Enterobacteriaceae, horizontal transfer of these virulence determinants is largely dependent on transfer by plasmids, phages, genomic islands (GIs) and genomic modules (GMs). The High Pathogenicity Island (HPI) is a GI encoding virulence genes that can be transferred between different Enterobacteriaceae. We investigated the HPI because it was present in an Enterobacter hormaechei outbreak strain (EHOS). Genome sequence analysis showed that the EHOS contained an integration site for mobile elements and harbored two GIs and three putative GMs, including a new variant of the HPI (HPI-ICEEh1). We demonstrate, for the first time, that combinatorial transfers of GIs and GMs between Enterobacter cloacae complex isolates must have occurred. Furthermore, the excision and circularization of several combinations of the GIs and GMs was demonstrated. Because of its flexibility, the multiple integration site of mobile DNA can be considered an integration hotspot (IHS) that increases the genomic plasticity of the bacterium. Multiple combinatorial transfers of diverse combinations of the HPI and other genomic elements among Enterobacteriaceae may accelerate the generation of new pathogenic strains.
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Affiliation(s)
- Armand Paauw
- Department of Medical Microbiology, University Medical Centre Utrecht, Utrecht, The Netherlands.
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