More movement with manure: increased mobility of erythromycin through agricultural soil in the presence of manure

Vertical migration of antibiotics during rainfall throughout a year in long-term manure-fertilized soils differing in pH

The vertical migration behavior of antibiotics in long-term manure-fertilized soils during rainfall remains unclear. Here, we examined antibiotics in soil profiles (0-60 cm) and leachates following each rainfall event throughout a year for three soils (acidic, neutral, and calcareous) with a 13-year history of manure application. The total concentrations of all the antibiotics in the soil profile (11.04-190.32 μg/kg) and the yearly cumulative load of these antibiotics in the leachate (4070-6900 ng/m2) were significantly higher in the acidic and neutral soils than in the calcareous soil. Rainfall caused the migration of antibiotics (especially tetracyclines, quinolones, and sulfonamides) from soil to leachate, while the migration dynamics of some antibiotics differed among the three soil profiles. Random forest analysis revealed that precipitation, soil organic carbon content, pH, sand content, and the partition coefficient (Kow) of antibiotics were the key factors influencing the migration of antibiotics. Environmental risk assessment suggested that antibiotics in leachates pose low toxicity risks to aquatic organisms. Nevertheless, the vertical migration of some antibiotics (e.g., sulfachaloropyridazine and sufamerazine) was positively correlated with the dissemination of high-risk antibiotic resistance genes in leachates. This study advances our understanding of the precipitation-caused vertical migration of antibiotics in soil exposed to manure application, considering future increases in severe rainfall events.

Exploration of Alicyclobacillus spp. Genome in Search of Antibiotic Resistance

The study investigates the antibiotic resistance (AR) profiles and genetic determinants in three strains of guaiacol-producing Alicyclobacillus spp. isolated from orchard soil and pears. Their phenotypic characteristics, such as spore formation; resistance to different factors, including drugs or disinfectants; or production of off-flavor compounds, can affect the taste and aroma of spoiled products. Food and beverages are potential vectors for the transfer of antibiotic resistance genes, which is a growing health concern; thus, microorganisms in food and beverages should not be a potential source of drug resistance to consumers. Whole-genome sequencing (WGS) was utilized to identify antibiotic resistance genes, metabolic pathways, and elements associated with guaiacol and halophenol production. Minimum inhibitory concentration (MIC) testing revealed that all strains were susceptible to eight out of nine tested antibiotics (ampicillin, gentamycin, kanamycin, streptomycin, clindamycin, tetracycline, chloramphenicol, and vancomycin) but exhibited high resistance to erythromycin. Analysis indicated that the erythromycin resistance gene, ribosomal RNA small subunit methyltransferase A (RsmA), was intrinsic and likely acquired through horizontal gene transfer (HGT). The comprehensive genomic analysis provides insights into the molecular mechanisms of antibiotic resistance in Alicyclobacillus spp., highlighting the potential risk of these bacteria as vectors for antibiotic resistance genes in the food chain. This study expands the understanding of the genetic makeup of these spoilage bacteria and their role in antimicrobial resistance dissemination.

Biodiversity of carbapenem-resistant bacteria in clinical samples from the Southwest Amazon region (Rondônia/Brazil)

Brazil is recognized for its biodiversity and the genetic variability of its organisms. This genetic variability becomes even more valuable when it is properly documented and accessible. Understanding bacterial diversity through molecular characterization is necessary as it can improve patient treatment, reduce the length of hospital stays and the selection of resistant bacteria, and generate data for health and epidemiological surveillance. In this sense, in this study, we aimed to understand the biodiversity and molecular epidemiology of carbapenem-resistant bacteria in clinical samples recovered in the state of Rondônia, located in the Southwest Amazon region. Retrospective data from the Central Public Health Laboratories (LACEN/RO) between 2018 and 2021 were analysed using the Laboratory Environment Manager Platform (GAL). Seventy-two species with carbapenem resistance profiles were identified, of which 25 species carried at least one gene encoding carbapenemases of classes A (blaKPC-like), B (blaNDM-like, blaSPM-like or blaVIM-like) and D (blaOXA-23-like, blaOXA-24-like, blaOXA-48-like, blaOXA-58-like or blaOXA-143-like), among which we will highlight Klebsiella pneumoniae, Pseudomonas aeruginosa, Acinetobacter baumannii, Serratia marcescens, and Providencia spp. With these results, we hope to contribute to the field by providing epidemiological molecular data for state surveillance on bacterial resistance and assisting in public policy decision-making.