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Osterne VJ, Pinto-Junior VR, Oliveira MV, Nascimento KS, Van Damme EJ, Cavada BS. Computational insights into the circular permutation roles on ConA binding and structural stability. Curr Res Struct Biol 2024; 7:100140. [PMID: 38559841 PMCID: PMC10979261 DOI: 10.1016/j.crstbi.2024.100140] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2023] [Revised: 03/17/2024] [Accepted: 03/20/2024] [Indexed: 04/04/2024] Open
Abstract
The mechanisms behind Concanavalin A (ConA) circular permutation have been under investigation since 1985. Although a vast amount of information is available about this lectin and its applications, the exact purpose of its processing remains unclear. To shed light on this, this study employed computer simulations to compare the unprocessed ProConA with the mature ConA. This approach aimed to reveal the importance of the post-translational modifications, especially how they affect the lectin stability and carbohydrate-binding properties. To achieve these goals, we conducted 200 ns molecular dynamics simulations and trajectory analyses on the monomeric forms of ProConA and ConA (both unbound and in complex with D-mannose and the GlcNAc2Man9 N-glycan), as well as on their oligomeric forms. Our findings reveal significant stability differences between ProConA and ConA at both the monomeric and tetrameric levels, with ProConA exhibiting consistently lower stability parameters compared to ConA. In terms of carbohydrate binding properties, however, both lectins showed remarkable similarities in their interaction profiles, contact numbers, and binding free energies with D-mannose and the high-mannose N-glycan. Overall, our results suggest that the processing of ProConA significantly enhances the stability of the mature lectin, especially in maintaining the tetrameric oligomer, without substantially affecting its carbohydrate-binding properties.
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Affiliation(s)
- Vinicius J.S. Osterne
- Laboratory of Biochemistry and Glycobiology, Department of Biotechnology, Ghent University, 9000, Ghent, Belgium
| | - Vanir R. Pinto-Junior
- Laboratory of Biologically Active Molecules, Department of Biochemistry and Molecular Biology, Federal University of Ceara, 60.440-970, Fortaleza, CE, Brazil
- Department of Physics, Federal University of Ceara, 60.440-970, Fortaleza, CE, Brazil
| | - Messias V. Oliveira
- Laboratory of Biologically Active Molecules, Department of Biochemistry and Molecular Biology, Federal University of Ceara, 60.440-970, Fortaleza, CE, Brazil
| | - Kyria S. Nascimento
- Laboratory of Biologically Active Molecules, Department of Biochemistry and Molecular Biology, Federal University of Ceara, 60.440-970, Fortaleza, CE, Brazil
| | - Els J.M. Van Damme
- Laboratory of Biochemistry and Glycobiology, Department of Biotechnology, Ghent University, 9000, Ghent, Belgium
| | - Benildo S. Cavada
- Laboratory of Biologically Active Molecules, Department of Biochemistry and Molecular Biology, Federal University of Ceara, 60.440-970, Fortaleza, CE, Brazil
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Cavada BS, Osterne VJS, Pinto-Junior VR, Nascimento KS. ConBr, the Lectin from Canavalia brasiliensis Mart. Seeds: Forty Years of Research. Curr Protein Pept Sci 2019; 20:600-613. [DOI: 10.2174/1389203720666190104123210] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2018] [Revised: 11/30/2018] [Accepted: 12/29/2018] [Indexed: 12/16/2022]
Abstract
Lectins are defined as proteins or glycoproteins capable of specific and reversible binding to
carbohydrates. Inside this group of proteins, the most well-studied lectins belong to the Leguminosae
family, and inside this family, the Diocleinae subtribe includes the most characterized lectin Concanavalin
A (ConA), as well as ConBr, the lectin from Canavalia brasiliensis, the subject of this review.
Since 1979, several studies have been published in the literature regarding this lectin, from its isolation
and characterization to its several biological activities. This year, 2019, will mark 40 years since researchers
have begun to study ConBr and 100 years since the discovery of ConA, making 2019 a momentous
year for lectinology. Owing to the abundance of studies involving ConBr, this review will
focus on ConBr’s purification, physicochemical properties, functional and structural analyses, biological
activities and biotechnological applications. This will give researchers a broad glimpse into the
potential of this lectin, as well as it characteristics, as we look ahead to its expanding applications in
glycomics and biotechnology.
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Affiliation(s)
- Benildo Sousa Cavada
- BioMol-Lab, Department of Biochemistry and Molecular Biology, Federal University of Ceara, Ceara, Brazil
| | | | - Vanir Reis Pinto-Junior
- BioMol-Lab, Department of Biochemistry and Molecular Biology, Federal University of Ceara, Ceara, Brazil
| | - Kyria Santiago Nascimento
- BioMol-Lab, Department of Biochemistry and Molecular Biology, Federal University of Ceara, Ceara, Brazil
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Lectin I from Bauhinia variegata (BVL-I) expressed by Pichia pastoris inhibits initial adhesion of oral bacteria in vitro. Int J Biol Macromol 2016; 93:913-918. [DOI: 10.1016/j.ijbiomac.2016.09.062] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2016] [Accepted: 09/16/2016] [Indexed: 12/19/2022]
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Oliveira C, Teixeira JA, Domingues L. Recombinant lectins: an array of tailor-made glycan-interaction biosynthetic tools. Crit Rev Biotechnol 2012; 33:66-80. [DOI: 10.3109/07388551.2012.670614] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
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