1
|
Jouanno LA, Chevalier A, Sekkat N, Perzo N, Castel H, Romieu A, Lange N, Sabot C, Renard PY. Kondrat’eva Ligation: Diels–Alder-Based Irreversible Reaction for Bioconjugation. J Org Chem 2014; 79:10353-66. [DOI: 10.1021/jo501972m] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Laurie-Anne Jouanno
- Normandie Univ, COBRA, UMR 6014 & FR 3038; Univ Rouen; INSA Rouen; CNRS, 1 rue Tesnière, 76821 Mont-Saint-Aignan Cedex, France
| | - Arnaud Chevalier
- Normandie Univ, COBRA, UMR 6014 & FR 3038; Univ Rouen; INSA Rouen; CNRS, 1 rue Tesnière, 76821 Mont-Saint-Aignan Cedex, France
| | - Nawal Sekkat
- Section
des Sciences Pharmaceutiques, Université de Genève, Université de Lausanne, Quai Ernest Ansermet 30, CH-1211 Genève 4, Switzerland
| | - Nicolas Perzo
- Inserm
U982, Laboratory of Neuronal and Neuroendocrine Communication and
Differentiation (DC2N), Astrocyte and Vascular Niche, Institute of
Research and Biomedical Innovation (IRIB), PRES Normandy University, University of Rouen, 76821 Mont-Saint-Aignan Cedex, France
- North-West Cancéropole (CNO), 59008 Lille Cedex, France
| | - Hélène Castel
- Inserm
U982, Laboratory of Neuronal and Neuroendocrine Communication and
Differentiation (DC2N), Astrocyte and Vascular Niche, Institute of
Research and Biomedical Innovation (IRIB), PRES Normandy University, University of Rouen, 76821 Mont-Saint-Aignan Cedex, France
- North-West Cancéropole (CNO), 59008 Lille Cedex, France
| | - Anthony Romieu
- ICMUB,
UMR CNRS 6302, Université de Bourgogne, 9 Avenue Alain Savary, 21078 Dijon, France
- Institut Universitaire de France, 103 Boulevard Saint-Michel, 75005 Paris, France
| | - Norbert Lange
- Section
des Sciences Pharmaceutiques, Université de Genève, Université de Lausanne, Quai Ernest Ansermet 30, CH-1211 Genève 4, Switzerland
| | - Cyrille Sabot
- Normandie Univ, COBRA, UMR 6014 & FR 3038; Univ Rouen; INSA Rouen; CNRS, 1 rue Tesnière, 76821 Mont-Saint-Aignan Cedex, France
| | - Pierre-Yves Renard
- Normandie Univ, COBRA, UMR 6014 & FR 3038; Univ Rouen; INSA Rouen; CNRS, 1 rue Tesnière, 76821 Mont-Saint-Aignan Cedex, France
| |
Collapse
|
2
|
Singh I, Freeman C, Madder A, Vyle JS, Heaney F. Fast RNA conjugations on solid phase by strain-promoted cycloadditions. Org Biomol Chem 2012; 10:6633-9. [DOI: 10.1039/c2ob25628b] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
|
3
|
Singh I, Freeman C, Heaney F. Efficient Synthesis of DNA Conjugates by Strain-Promoted Azide-Cyclooctyne Cycloaddition in the Solid Phase. European J Org Chem 2011. [DOI: 10.1002/ejoc.201101045] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
|
4
|
Arumugam S, Popik VV. Patterned surface derivatization using Diels-Alder photoclick reaction. J Am Chem Soc 2011; 133:15730-6. [PMID: 21861517 DOI: 10.1021/ja205652m] [Citation(s) in RCA: 78] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Abstract
The utility of photochemically induced hetero-Diels-Alder reaction for the light-directed surface derivatization and patterning was demonstrated. Glass slides functionalized with vinyl ether moieties are covered with aqueous solution of substrates conjugated to 3-(hydroxymethyl)-2-naphthol (NQMP). Subsequent irradiation via shadow mask results in an efficient conversion of the latter functionality into reactive 2-napthoquinone-3-methide (oNQM) in the exposed areas. oNQM undergoes very facile hetero Diels-Alder addition (k(D-A) ≈ 4 × 10(4) M(-1)s(-1)) to immobilized vinyl ether molecules resulting in a photochemically stable covalent link between a substrate and a surface. Unreacted oNQM groups are rapidly hydrated to regenerate NQMP. The click chemistry based on the addition of photochemically generated oNQM to vinyl ether works well in aqueous solution, proceeds at high rate under ambient conditions, and does not require catalyst or additional reagents. This photoclick strategy represents an unusual paradigm in photopatterning: the surface itself is photochemically inert, while photoreactive component is present in the solution. The short lifetime (τ ≈ 7 ms in H(2)O) of the active form of a photoclick reagent in aqueous solution prevents its migration from the site of irradiation, thus allowing for the spatial control of surface derivatization. Both o-napthoquinone methide precursors and vinyl ethers are stable in dark and the reaction is orthogonal to other derivatization techniques, such as acetylene-azide click reaction.
Collapse
|
5
|
Aaronson JG, Klein LJ, Momose AA, O’Brien AM, Shaw AW, Tucker TJ, Yuan Y, Tellers DM. Rapid HATU-Mediated Solution Phase siRNA Conjugation. Bioconjug Chem 2011; 22:1723-8. [PMID: 21744777 DOI: 10.1021/bc2001227] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Jeffrey G. Aaronson
- Department of Medicinal Chemistry and ‡Department of Pharmaceutical Analytical Chemistry, Merck Research Laboratories, Merck & Co., Inc., West Point, Pennsylvania 19486, United States
| | - Lee J. Klein
- Department of Medicinal Chemistry and ‡Department of Pharmaceutical Analytical Chemistry, Merck Research Laboratories, Merck & Co., Inc., West Point, Pennsylvania 19486, United States
| | - Aaron A. Momose
- Department of Medicinal Chemistry and ‡Department of Pharmaceutical Analytical Chemistry, Merck Research Laboratories, Merck & Co., Inc., West Point, Pennsylvania 19486, United States
| | - Ann M. O’Brien
- Department of Medicinal Chemistry and ‡Department of Pharmaceutical Analytical Chemistry, Merck Research Laboratories, Merck & Co., Inc., West Point, Pennsylvania 19486, United States
| | - Anthony W. Shaw
- Department of Medicinal Chemistry and ‡Department of Pharmaceutical Analytical Chemistry, Merck Research Laboratories, Merck & Co., Inc., West Point, Pennsylvania 19486, United States
| | - Thomas J. Tucker
- Department of Medicinal Chemistry and ‡Department of Pharmaceutical Analytical Chemistry, Merck Research Laboratories, Merck & Co., Inc., West Point, Pennsylvania 19486, United States
| | - Yu Yuan
- Department of Medicinal Chemistry and ‡Department of Pharmaceutical Analytical Chemistry, Merck Research Laboratories, Merck & Co., Inc., West Point, Pennsylvania 19486, United States
| | - David M. Tellers
- Department of Medicinal Chemistry and ‡Department of Pharmaceutical Analytical Chemistry, Merck Research Laboratories, Merck & Co., Inc., West Point, Pennsylvania 19486, United States
| |
Collapse
|
6
|
Arumugam S, Popik VV. Light-induced hetero-Diels-Alder cycloaddition: a facile and selective photoclick reaction. J Am Chem Soc 2011; 133:5573-9. [PMID: 21417455 DOI: 10.1021/ja200356f] [Citation(s) in RCA: 105] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
2-Napthoquinone-3-methides (oNQMs) generated by efficient photodehydration (Φ=0.2) of 3-(hydroxymethyl)-2-naphthol undergo facile hetero-Diels-Alder addition (k(D-A)∼ 4×10(4) M(-1) s(-1)) to electron-rich polarized olefins in an aqueous solution. The resulting photostable benzo[g]chromans are produced in high to quantitative yield. The unreacted oNQM is rapidly hydrated (k(H2O) ∼145 s(-1)) to regenerate the starting diol. This competition between hydration and cycloaddition makes oNQMs highly selective, since only vinyl ethers and enamines are reactive enough to form the Diels-Alder adduct in an aqueous solution; no cycloaddition was observed with other types of alkenes. To achieve photolabeling or photoligation of two substrates, one is derivatized with a vinyl ether moiety, while 3-(hydroxymethyl)-2-naphthol is attached to the other via an appropriate linker. The light-induced Diels-Alder "click" strategy permits the formation of either a permanent or hydrolytically labile linkage. Rapid kinetics of this photoclick reaction (k=4×10(4) M(-1) s(-1)) is useful for time-resolved applications. The short lifetime (τ ∼7 ms in H(2)O) of the active form of the photoclick reagent prevents its migration from the site of irradiation, thus, allowing for spatial control of the ligation or labeling.
Collapse
|
7
|
Tasdelen MA. Diels–Alder “click” reactions: recent applications in polymer and material science. Polym Chem 2011. [DOI: 10.1039/c1py00041a] [Citation(s) in RCA: 439] [Impact Index Per Article: 33.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
|
8
|
Belen’kii L, Gramenitskaya V, Evdokimenkova Y. The Literature of Heterocyclic Chemistry, Part X, 2005–2007. ADVANCES IN HETEROCYCLIC CHEMISTRY 2011. [DOI: 10.1016/b978-0-12-385464-3.00001-7] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
|
9
|
Fu R, Fu GD. Polymeric nanomaterials from combined click chemistry and controlled radical polymerization. Polym Chem 2011. [DOI: 10.1039/c0py00174k] [Citation(s) in RCA: 90] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
|
10
|
Singh Y, Murat P, Defrancq E. Recent developments in oligonucleotide conjugation. Chem Soc Rev 2010; 39:2054-70. [PMID: 20393645 DOI: 10.1039/b911431a] [Citation(s) in RCA: 180] [Impact Index Per Article: 12.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
Synthetic oligonucleotides (ONs) are being investigated for various therapeutic and diagnostic applications. The interest in ONs arises because of their capability to cause selective inhibition of gene expression by binding to the target DNA/RNA sequences through mechanisms such as antigene, antisense, and RNA interference. ONs with catalytic activity (ribozymes and DNAzymes) against the target sequences, and ability to bind to the target molecules (aptamers), ranging from small molecules to proteins, are also known. Therefore ONs are considered potentially useful for the treatment of viral diseases and cancer. ONs also find use in the design of DNA microchips (a powerful bio-analytical tool) and novel materials in nanotechnology. However, the clinical success achieved so far with ONs has not been satisfactory, and the major impediments have been recognised as their instability against nucleases, lack of target specificity, and poor uptake and targeted delivery. Tremendous efforts have been made to improve the ON properties by either incorporating chemical modifications in the ON structure or covalently linking (conjugation) reporter groups, with biologically relevant properties, to ONs. Conjugation is of great interest because it can be used not only to improve the existing ON properties but also to impart entirely new properties. This tutorial review focuses on the recent developments in ON conjugation, and describes the key challenges in efficient ON conjugation and major synthetic approaches available for successful ON conjugate syntheses. In addition, an overview on major classes of ON conjugates along with their use in therapeutics, diagnostics and nanotechnology is provided.
Collapse
Affiliation(s)
- Yashveer Singh
- Départment of Pharmaceutics, Ernest Mario School of Pharmacy, Rutgers, The State University of New Jersey, New Brunswick, NJ, USA.
| | | | | |
Collapse
|
11
|
Kotsuki H, Nakano K, Ichikawa Y. Organocatalytic Asymmetric Diels-Alder Reaction of Furan under High Pressure. HETEROCYCLES 2010. [DOI: 10.3987/com-09-s(s)85] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
|
12
|
Best MD. Click Chemistry and Bioorthogonal Reactions: Unprecedented Selectivity in the Labeling of Biological Molecules. Biochemistry 2009; 48:6571-84. [DOI: 10.1021/bi9007726] [Citation(s) in RCA: 522] [Impact Index Per Article: 34.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Affiliation(s)
- Michael D. Best
- Department of Chemistry, University of Tennessee, Knoxville, Tennessee 37996
| |
Collapse
|
13
|
Weisbrod SH, Marx A. Novel strategies for the site-specific covalent labelling of nucleic acids. Chem Commun (Camb) 2008:5675-85. [PMID: 19009049 DOI: 10.1039/b809528k] [Citation(s) in RCA: 181] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
To broaden the scope of applications in DNA nano- and biotechnology, material science, diagnostics and molecular recognition the functionalization of DNA is of utmost importance. In the last decade many new methods have been developed to achieve this goal. Apart from the direct chemical synthesis of modified DNA by automated phosphoramidite chemistry incorporation of labelled triphosphates and the post-synthetic labelling approach evolved as valuable methods. New bioorthogonal reactions as Diels-Alder, click and Staudinger ligations pushed forward the post-synthetic approach as new insights into DNA polymerase substrate specificity allowed generation and amplification of labelled DNA strands. These novel developments are summarized herein.
Collapse
Affiliation(s)
- Samuel H Weisbrod
- Department of Chemistry and Konstanz Research School Chemical Biology, University of Konstanz, 78457, Konstanz, Germany
| | | |
Collapse
|
14
|
HNA and ANA high-affinity arrays for detections of DNA and RNA single-base mismatches. Biosens Bioelectron 2008; 23:1728-32. [DOI: 10.1016/j.bios.2008.01.033] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2007] [Revised: 01/21/2008] [Accepted: 01/22/2008] [Indexed: 11/18/2022]
|
15
|
Abstract
Understanding the function of biomolecules is crucially dependent on observing the dynamics of their biosynthesis, distribution, and metabolism in their native environment at the cellular and organismal levels rather than their behavior in the isolated samples. Small bioorthogonal functional groups that cause minimal, if any, perturbations of the native structure and function of the target molecule under physiological conditions and react selectively with an appropriately derivatized probe could function as chemical handles that allow selective visualization of the target molecule in the complex biological milieu. Small and generally unreactive, organic azides are ideally suited for this task: they can be carried unnoticed through multiple biosynthetic steps only to be revealed, when desired, by action of a suitably derivatized visualization label.
Collapse
Affiliation(s)
- Valery V. Fokin
- Department of Chemistry, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, California 92037
| |
Collapse
|
16
|
Kimura M, Horino Y, Mori M, Tamaru Y. Chameleon Reactivity of the Allene Bond of 4-Vinylidene-2-oxazolidinone: Novel Through-Space Conjugative Nucleophilic Addition of Electron-Rich Alkenes and Hetero-Nucleophiles. Chemistry 2007; 13:9686-702. [PMID: 17768719 DOI: 10.1002/chem.200700691] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
The Calpha==Cbeta double bond of allene carbamates 1 serves as an electron acceptor similar to the double bond of conjugated enones by means of a through-space interaction with the N--SO2 bond; the carbamate double bond is thus subject to nucleophilic addition for a wide variety of nucleophiles, which proceeds under mild conditions by heating at 70-100 degrees C. Depending on the kind of nucleophiles, 1 displays three different reaction modes: 1) Typically enol ethers and allylsilanes promote 1,3-sulfonyl migration of 1 and undergo the inverse electron demand Diels-Alder reaction with the 1-aza-1,3-butadiene intermediates II thus formed to furnish bicyclic 2-alkoxy-5-sulfonyltetrahydropyridines 2 and 2-silylmethyl-5-sulfonyltetrahydropyridines 3, respectively, with high regio- and stereoselectivity and retention of configuration of the double bonds of these electron-rich alkenes; 2) silanes (RnSiH4-n, n=1-3) and thiols deliver the hydride and the thiolate at the Cbeta carbon and promote the 1,3-sulfonyl migration, followed by protonation of the thus-formed carbamate anion (Z)-III to provide, for example, (Z)-4 a and (Z)-4 j, respectively; 3) alcohols simply add to the Calpha==Cbeta double bond and provide (E)-6. Usually, the reaction with alcohols is accompanied by the second pathway, giving rise to, for example, (Z)-4 b in addition to (E)-6 b. Phenol engages in the third pathway and provides (E)-6 g exclusively. Heteroaromatics, such as furans and benzofurans follow the first pathway, however, in a different regioselectivity from enol ethers and allylsilanes, delivering the oxygen atom at the 3-position of 5-sulfonyltetrahydropyridines (2 g and 2 h). Indoles, on the other hand, show a dichotomy, equally enjoying the first and the third pathways and provide mixtures of (E)-7 and (E)-8, respectively.
Collapse
Affiliation(s)
- Masanari Kimura
- Graduate School of Science and Technology, Department of Applied Chemistry, Nagasaki University, 1-14 Bunkyo-machi, Nagasaki 852-8521, Japan
| | | | | | | |
Collapse
|