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Fang S, Hong S, Li Q, Li P, Coats T, Zou B, Kong G. Cross-modal similar clinical case retrieval using a modular model based on contrastive learning and k-nearest neighbor search. Int J Med Inform 2025; 193:105680. [PMID: 39500035 DOI: 10.1016/j.ijmedinf.2024.105680] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2024] [Revised: 09/20/2024] [Accepted: 10/28/2024] [Indexed: 12/01/2024]
Abstract
OBJECTIVE Electronic health record systems have made it possible for clinicians to use previously encountered similar cases to support clinical decision-making. However, most studies for similar case retrieval were based on single-modal data. The existing studies on cross-modal clinical case retrieval were limited. We aimed to develop a CRoss-Modal Retrieval (CRMR) model to retrieve similar clinical cases recorded in different data modalities. MATERIALS AND METHODS The publically available Medical Information Mart for Intensive Care-Chest X-ray (MIMIC-CXR) dataset was used for model development and testing. The CRMR model was designed as a modular model containing two feature extraction models, two feature transformation models, one feature transformation optimization model, and one case retrieval model. The ability to retrieve similar clinical cases recorded in different data modalities was facilitated by the use of contrastive deep learning and k-nearest neighbor search. RESULTS The average retrieval precision, denoted as AP@k, of the developed CRMR model, were 76.9 %@5, 76.7 %@10, 76.5 %@20, 76.3 %@50, and 77.9 %@100, respectively. Here k is the number of similar cases returned after retrieval. The average retrieval time varied from 0.013 ms to 0.016 ms with k varying from 5 to 100. Moreover, the model can retrieve similar cases with the same multiple radiographic manifestations as the query case. DISCUSSION The CRMR model has shown promising cross-modal retrieval performance in clinical case analysis, with the potential for future scalability and improvement in handling diverse disease types and data modalities. The CRMR model has promising potential to aid clinicians in making optimal and explainable clinical decisions.
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Affiliation(s)
- Shichao Fang
- National Institute of Health Data Science, Peking University, Beijing, China; Advanced Institute of Information Technology, Peking University, Hangzhou, Zhejiang, China; Institute of Psychiatry, Psychology & Neuroscience, King's College London, London, UK; King's College Hospital NHS Foundation Trust, London, UK
| | - Shenda Hong
- National Institute of Health Data Science, Peking University, Beijing, China
| | - Qing Li
- Advanced Institute of Information Technology, Peking University, Hangzhou, Zhejiang, China
| | - Pengfei Li
- Advanced Institute of Information Technology, Peking University, Hangzhou, Zhejiang, China
| | - Tim Coats
- Emergency Medicine Academic Group, Department of Cardiovascular Sciences, University of Leicester, Leicester, UK
| | - Beiji Zou
- School of Computer Science and Engineering, Central South University, Changsha, Hunan, China
| | - Guilan Kong
- National Institute of Health Data Science, Peking University, Beijing, China; Advanced Institute of Information Technology, Peking University, Hangzhou, Zhejiang, China.
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Kwon C, Essayei L, Spencer M, Etheridge T, Venkatesh R, Vengadesan N, Thiel CL. The Environmental Impacts of Electronic Medical Records Versus Paper Records at a Large Eye Hospital in India: Life Cycle Assessment Study. J Med Internet Res 2024; 26:e42140. [PMID: 38319701 PMCID: PMC10879968 DOI: 10.2196/42140] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2022] [Revised: 03/22/2023] [Accepted: 04/19/2023] [Indexed: 02/07/2024] Open
Abstract
BACKGROUND Health care providers worldwide are rapidly adopting electronic medical record (EMR) systems, replacing paper record-keeping systems. Despite numerous benefits to EMRs, the environmental emissions associated with medical record-keeping are unknown. Given the need for urgent climate action, understanding the carbon footprint of EMRs will assist in decarbonizing their adoption and use. OBJECTIVE We aimed to estimate and compare the environmental emissions associated with paper medical record-keeping and its replacement EMR system at a high-volume eye care facility in southern India. METHODS We conducted the life cycle assessment methodology per the ISO (International Organization for Standardization) 14040 standard, with primary data supplied by the eye care facility. Data on the paper record-keeping system include the production, use, and disposal of paper and writing utensils in 2016. The EMR system was adopted at this location in 2018. Data on the EMR system include the allocated production and disposal of capital equipment (such as computers and routers); the production, use, and disposal of consumable goods like paper and writing utensils; and the electricity required to run the EMR system. We excluded built infrastructure and cooling loads (eg. buildings and ventilation) from both systems. We used sensitivity analyses to model the effects of practice variation and data uncertainty and Monte Carlo assessments to statistically compare the 2 systems, with and without renewable electricity sources. RESULTS This location's EMR system was found to emit substantially more greenhouse gases (GHGs) than their paper medical record system (195,000 kg carbon dioxide equivalents [CO2e] per year or 0.361 kg CO2e per patient visit compared with 20,800 kg CO2e per year or 0.037 kg CO2e per patient). However, sensitivity analyses show that the effect of electricity sources is a major factor in determining which record-keeping system emits fewer GHGs. If the study hospital sourced all electricity from renewable sources such as solar or wind power rather than the Indian electric grid, their EMR emissions would drop to 24,900 kg CO2e (0.046 kg CO2e per patient), a level comparable to the paper record-keeping system. Energy-efficient EMR equipment (such as computers and monitors) is the next largest factor impacting emissions, followed by equipment life spans. Multimedia Appendix 1 includes other emissions impact categories. CONCLUSIONS The climate-changing emissions associated with an EMR system are heavily dependent on the sources of electricity. With a decarbonized electricity source, the EMR system's GHG emissions are on par with paper medical record-keeping, and decarbonized grids would likely have a much broader benefit to society. Though we found that the EMR system produced more emissions than a paper record-keeping system, this study does not account for potential expanded environmental gains from EMRs, including expanding access to care while reducing patient travel and operational efficiencies that can reduce unnecessary or redundant care.
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Affiliation(s)
- Cordelia Kwon
- Department of Population Health, NYU Langone Health, New York, NY, United States
| | - Lernik Essayei
- NYU Wagner School of Public Service, New York, NY, United States
| | - Michael Spencer
- Rausser College of Natural Resources, University of California, Berkeley, Berkeley, CA, United States
| | | | | | | | - Cassandra L Thiel
- Center for Healthcare Innovation and Delivery Science, Department of Population Health, NYU Langone Health, New York, NY, United States
- Department of Ophthalmology, NYU Langone Health, New York, NY, United States
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Zhang GW, Gong M, Li HJ, Wang S, Gong DX. The "Trinity" smart hospital construction policy promotes the development of hospitals and health management in China. Front Public Health 2023; 11:1219407. [PMID: 37546298 PMCID: PMC10402917 DOI: 10.3389/fpubh.2023.1219407] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2023] [Accepted: 06/28/2023] [Indexed: 08/08/2023] Open
Abstract
Recently, in order to comprehensively promote the development of medical institutions and solve the nationwide problems in the healthcare fields, the government of China developed an innovative national policy of "Trinity" smart hospital construction, which includes "smart medicine," "smart services," and "smart management". The prototype of the evaluation system has been established, and a large number of construction achievements have emerged in many hospitals. In this article, the summary of this field was performed to provide a reference for medical workers, managers of hospitals, and policymakers.
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Affiliation(s)
- Guang-Wei Zhang
- Department of Smart Hospital Management, The First Hospital of China Medical University, Shenyang, China
- The Internet Hospital of the First Hospital of China Medical University, Shenyang, China
- The Internet Hospital Branch of the Chinese Research Hospital Association, Beijing, China
| | | | - Hui-Jun Li
- Shenyang Medical & Film Science and Technology Co. Ltd., Shenyang, China
- Enduring Medicine Smart Innovation Research Institute, Shenyang, China
| | - Shuang Wang
- Department of General Practice, The First Hospital of China Medical University, Shenyang, China
| | - Da-Xin Gong
- Department of Smart Hospital Management, The First Hospital of China Medical University, Shenyang, China
- The Internet Hospital of the First Hospital of China Medical University, Shenyang, China
- The Internet Hospital Branch of the Chinese Research Hospital Association, Beijing, China
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Intercepting Medication Errors in Pediatric In-patients Using a Prescription Pre-audit Intelligent Decision System: A Single-center Study. Paediatr Drugs 2022; 24:555-562. [PMID: 35906499 DOI: 10.1007/s40272-022-00521-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Accepted: 06/07/2022] [Indexed: 11/27/2022]
Abstract
OBJECTIVES Medication errors can happen at any phase of the medication process at health care settings. The objective of this study is to identify the characteristics of severe prescribing errors at a pediatric hospital in the inpatient setting and to provide recommendations to improve medication safety and rational drug use. METHODS This descriptive retrospective study was conducted at a tertiary pediatric hospital using data collected from Jan. 1st, 2019 to Dec. 31st, 2020. During this period, the Prescription Pre-audit Intelligent Decision System was implemented. Medication orders with potential severe errors would trigger a Level 7 alert and would be intercepted before it reached the pharmacy. Trained pharmacists maintained the system and facilitated decision making when necessary. For each order intercepted by the system the following patient details were recorded and analyzed: patient age, patient's department, drug classification, dosage forms, route of administration, and the type of error. RESULTS A total of 2176 Level 7 medication orders were intercepted. The most common errors were associated with drug dosage, administration route, and dose frequency, accounting for 35.2%, 32.8% and 13.2%, respectively. Of all the intercepted oerrors. 53.6% occurred in infants aged < 1 year. Administration routes involved were mainly intravenous, oral and external use drugs. Most alerts came from the neonatology department and constituted 40.5% of the total alerts, followed by the nephrology department 15.9% and pediatric intensive care unit (PICU) 11.3%. As to dosage forms, injections accounted for 50.4% of alerts, with 21.3% attributable to topical solutions, 9.1% to tablets, and 5.7% to inhalation. Anti-infective agents were the most common therapeutic drugs prescribed with errors. CONCLUSIONS The Prescription Pre-audit Intelligent Decision System, with the supervision of trained pharmacists can validate prescriptions, increase prescription accuracy, and improve drug safety for hospitalized children. It is a medical service model worthy of consideration.
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Wang M, Li S, Zheng T, Li N, Shi Q, Zhuo X, Ding R, Huang Y. Big Data Health Care Platform With Multisource Heterogeneous Data Integration and Massive High-Dimensional Data Governance for Large Hospitals: Design, Development, and Application. JMIR Med Inform 2022; 10:e36481. [PMID: 35416792 PMCID: PMC9047713 DOI: 10.2196/36481] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2022] [Revised: 02/17/2022] [Accepted: 02/25/2022] [Indexed: 11/13/2022] Open
Abstract
BACKGROUND With the advent of data-intensive science, a full integration of big data science and health care will bring a cross-field revolution to the medical community in China. The concept big data represents not only a technology but also a resource and a method. Big data are regarded as an important strategic resource both at the national level and at the medical institutional level, thus great importance has been attached to the construction of a big data platform for health care. OBJECTIVE We aimed to develop and implement a big data platform for a large hospital, to overcome difficulties in integrating, calculating, storing, and governing multisource heterogeneous data in a standardized way, as well as to ensure health care data security. METHODS The project to build a big data platform at West China Hospital of Sichuan University was launched in 2017. The West China Hospital of Sichuan University big data platform has extracted, integrated, and governed data from different departments and sections of the hospital since January 2008. A master-slave mode was implemented to realize the real-time integration of multisource heterogeneous massive data, and an environment that separates heterogeneous characteristic data storage and calculation processes was built. A business-based metadata model was improved for data quality control, and a standardized health care data governance system and scientific closed-loop data security ecology were established. RESULTS After 3 years of design, development, and testing, the West China Hospital of Sichuan University big data platform was formally brought online in November 2020. It has formed a massive multidimensional data resource database, with more than 12.49 million patients, 75.67 million visits, and 8475 data variables. Along with hospital operations data, newly generated data are entered into the platform in real time. Since its launch, the platform has supported more than 20 major projects and provided data service, storage, and computing power support to many scientific teams, facilitating a shift in the data support model-from conventional manual extraction to self-service retrieval (which has reached 8561 retrievals per month). CONCLUSIONS The platform can combine operation systems data from all departments and sections in a hospital to form a massive high-dimensional high-quality health care database that allows electronic medical records to be used effectively and taps into the value of data to fully support clinical services, scientific research, and operations management. The West China Hospital of Sichuan University big data platform can successfully generate multisource heterogeneous data storage and computing power. By effectively governing massive multidimensional data gathered from multiple sources, the West China Hospital of Sichuan University big data platform provides highly available data assets and thus has a high application value in the health care field. The West China Hospital of Sichuan University big data platform facilitates simpler and more efficient utilization of electronic medical record data for real-world research.
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Affiliation(s)
- Miye Wang
- Engineering Research Center of Medical Information Technology, West China Hospital of Sichuan University, Ministry of Education, Chengdu, Sichuan Province, China
| | - Sheyu Li
- Department of Endocrinology and Metabolism, MAGIC China Centre, Cochrane China Centre, West China Hospital, Sichuan University, Chengdu, China
| | - Tao Zheng
- Engineering Research Center of Medical Information Technology, West China Hospital of Sichuan University, Ministry of Education, Chengdu, Sichuan Province, China
| | - Nan Li
- Engineering Research Center of Medical Information Technology, West China Hospital of Sichuan University, Ministry of Education, Chengdu, Sichuan Province, China
| | - Qingke Shi
- Engineering Research Center of Medical Information Technology, West China Hospital of Sichuan University, Ministry of Education, Chengdu, Sichuan Province, China
| | - Xuejun Zhuo
- Engineering Research Center of Medical Information Technology, West China Hospital of Sichuan University, Ministry of Education, Chengdu, Sichuan Province, China
| | - Renxin Ding
- Engineering Research Center of Medical Information Technology, West China Hospital of Sichuan University, Ministry of Education, Chengdu, Sichuan Province, China
| | - Yong Huang
- Engineering Research Center of Medical Information Technology, West China Hospital of Sichuan University, Ministry of Education, Chengdu, Sichuan Province, China
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Almowil Z, Zhou SM, Brophy S, Croxall J. Concept Libraries for Repeatable and Reusable Research: Qualitative Study Exploring the Needs of Users. JMIR Hum Factors 2022; 9:e31021. [PMID: 35289755 PMCID: PMC8965669 DOI: 10.2196/31021] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2021] [Revised: 11/17/2021] [Accepted: 12/05/2021] [Indexed: 12/05/2022] Open
Abstract
Background Big data research in the field of health sciences is hindered by a lack of agreement on how to identify and define different conditions and their medications. This means that researchers and health professionals often have different phenotype definitions for the same condition. This lack of agreement makes it difficult to compare different study findings and hinders the ability to conduct repeatable and reusable research. Objective This study aims to examine the requirements of various users, such as researchers, clinicians, machine learning experts, and managers, in the development of a data portal for phenotypes (a concept library). Methods This was a qualitative study using interviews and focus group discussion. One-to-one interviews were conducted with researchers, clinicians, machine learning experts, and senior research managers in health data science (N=6) to explore their specific needs in the development of a concept library. In addition, a focus group discussion with researchers (N=14) working with the Secured Anonymized Information Linkage databank, a national eHealth data linkage infrastructure, was held to perform a SWOT (strengths, weaknesses, opportunities, and threats) analysis for the phenotyping system and the proposed concept library. The interviews and focus group discussion were transcribed verbatim, and 2 thematic analyses were performed. Results Most of the participants thought that the prototype concept library would be a very helpful resource for conducting repeatable research, but they specified that many requirements are needed before its development. Although all the participants stated that they were aware of some existing concept libraries, most of them expressed negative perceptions about them. The participants mentioned several facilitators that would stimulate them to share their work and reuse the work of others, and they pointed out several barriers that could inhibit them from sharing their work and reusing the work of others. The participants suggested some developments that they would like to see to improve reproducible research output using routine data. Conclusions The study indicated that most interviewees valued a concept library for phenotypes. However, only half of the participants felt that they would contribute by providing definitions for the concept library, and they reported many barriers regarding sharing their work on a publicly accessible platform. Analysis of interviews and the focus group discussion revealed that different stakeholders have different requirements, facilitators, barriers, and concerns about a prototype concept library.
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Affiliation(s)
- Zahra Almowil
- Data Science Building, Medical School, Swansea University, Swansea, Wales, United Kingdom
| | - Shang-Ming Zhou
- Centre For Health Technology, Faculty of Health, University of Plymouth, Plymouth, United Kingdom
| | - Sinead Brophy
- Data Science Building, Medical School, Swansea University, Swansea, Wales, United Kingdom
| | - Jodie Croxall
- Data Science Building, Medical School, Swansea University, Swansea, Wales, United Kingdom
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van Poelgeest R, Schrijvers A, Boonstra A, Roes K. Medical Specialists' Perspectives on the Influence of Electronic Medical Record Use on the Quality of Hospital Care: Semistructured Interview Study. JMIR Hum Factors 2021; 8:e27671. [PMID: 34704955 PMCID: PMC8581752 DOI: 10.2196/27671] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2021] [Revised: 07/25/2021] [Accepted: 08/10/2021] [Indexed: 01/24/2023] Open
Abstract
Background Numerous publications show that electronic medical records (EMRs) may make an important contribution to increasing the quality of care. There are indications that particularly the medical specialist plays an important role in the use of EMRs in hospitals. Objective The aim of this study was to examine how, and by which aspects, the relationship between EMR use and the quality of care in hospitals is influenced according to medical specialists. Methods To answer this question, a qualitative study was conducted in the period of August-October 2018. Semistructured interviews of around 90 min were conducted with 11 medical specialists from 11 different Dutch hospitals. For analysis of the answers, we used a previously published taxonomy of factors that can influence the use of EMRs. Results The professional experience of the participating medical specialists varied between 5 and 27 years. Using the previously published taxonomy, these medical specialists considered technical barriers the most significant for EMR use. The suboptimal change processes surrounding implementation were also perceived as a major barrier. A final major problem is related to the categories “social” (their relationships with the patients and fellow care providers), “psychological” (based on their personal issues, knowledge, and perceptions), and “time” (the time required to select, implement, and learn how to use EMR systems and subsequently enter data into the system). However, the medical specialists also identified potential technical facilitators, particularly in the assured availability of information to all health care professionals involved in the care of a patient. They see promise in using EMRs for medical decision support to improve the quality of care but consider these possibilities currently lacking. Conclusions The 11 medical specialists shared positive experiences with EMR use when comparing it to formerly used paper records. The fact that involved health care professionals can access patient data at any time they need is considered important. However, in practice, potential quality improvement lags as long as decision support cannot be applied because of the lack of a fully coded patient record.
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Affiliation(s)
- Rube van Poelgeest
- Julius Center, University Medical Center, University of Utrecht, Utrecht, Netherlands
| | - Augustinus Schrijvers
- Julius Center, University Medical Center, University of Utrecht, Utrecht, Netherlands
| | - Albert Boonstra
- Faculty of Economics and Business, University of Groningen, Groningen, Netherlands
| | - Kit Roes
- Radboudumc, University of Nijmegen, Nijmegen, Netherlands
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