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Li B, Xiao M, Zeng R, Zhang L. Developing a multiomics data-based mathematical model to predict colorectal cancer recurrence and metastasis. BMC Med Inform Decis Mak 2025; 25:188. [PMID: 40375082 DOI: 10.1186/s12911-025-03012-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2023] [Accepted: 04/11/2025] [Indexed: 05/18/2025] Open
Abstract
BACKGROUND Colorectal cancer is the fourth most deadly cancer, with a high mortality rate and a high probability of recurrence and metastasis. Since continuous examinations and disease monitoring for patients after surgery are currently difficult to perform, it is necessary for us to develop a predictive model for colorectal cancer metastasis and recurrence to improve the survival rate of patients. RESULTS Previous studies mostly used only clinical or radiological data, which are not sufficient to explain the in-depth mechanism of colorectal cancer recurrence and metastasis. Therefore, this study proposes such a multiomics data-based predictive model for the recurrence and metastasis of colorectal cancer. LR, SVM, Naïve-bayes and ensemble learning models are used to build this predictive model. CONCLUSIONS The experimental results indicate that our proposed multiomics data-based ensemble learning model effectively predicts the recurrence and metastasis of colorectal cancer.
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Affiliation(s)
- Bing Li
- College of Computer Science, Sichuan University, Chengdu, 610065, China
| | - Ming Xiao
- College of Computer Science, Sichuan University, Chengdu, 610065, China
| | - Rong Zeng
- CAS Key Laboratory of Systems Biology, Shanghai Institute of Biochemistry and Cell Biology, Center for Excellence in Molecular Cell Science, Chinese Academy of Sciences, Shanghai, 200031, China
- CAS Key Laboratory of Systems Biology, Hangzhou Institute for Advanced Study, University of Chinese Academy of Sciences, Chinese Academy of Sciences, Hangzhou, 310024, China
- School of Life Science and Technology, ShanghaiTech University, Shanghai, 201210, China
| | - Le Zhang
- College of Computer Science, Sichuan University, Chengdu, 610065, China.
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Sabour S. Prognostic prediction by liver tissue proteomic profiling in patients with colorectal liver metastases; rule of thumb. Future Oncol 2017. [PMID: 28650211 DOI: 10.2217/fon-2017-0035] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Response to: Reyes A, Marti J, Marfà S et al. Prognostic prediction by liver tissue proteomic profiling in patients with colorectal liver metastases. Future Oncol. 13(10), 875-882 (2017).
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Affiliation(s)
- Siamak Sabour
- Safety Promotion & Injury Prevention Research Center, Shahid Beheshti University of Medical Sciences, Tehran, I.R. Iran.,Department of Clinical Epidemiology, Shahid Beheshti University of Medical Sciences, Tehran, I.R. Iran
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Reyes A, Marti J, Marfa S, Jimenez W, Reichenbach V, Pelegrina A, Fondevila C, Valdecasas JC, Fuster J. Letter in reply: Prognostic prediction by liver tissue proteomic profiling in patients with colorectal liver metastases. Future Oncol 2017. [PMID: 28650245 DOI: 10.2217/fon-2017-0103] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
In response to: S Sabour. Prognostic prediction by liver tissue proteomic profiling in patients with colorectal liver metastases; rule of thumb.
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Affiliation(s)
- Adalgiza Reyes
- Liver Surgery & Transplantation Unit, Department of Surgery, ICMDM, Hospital Clinic, IDIBAPS, CIBERehd, Villarroel, 170, 08036, Barcelona, Spain
| | - Josep Marti
- Liver Surgery & Transplantation Unit, Department of Surgery, ICMDM, Hospital Clinic, IDIBAPS, CIBERehd, Villarroel, 170, 08036, Barcelona, Spain
| | - Santiago Marfa
- Biochemistry & Molecular Genetics Service, Hospital Clinic, IDIBAPS, CIBERehd, Villarroel, 170, 08036, Barcelona, Spain
| | - Wladimiro Jimenez
- Biochemistry & Molecular Genetics Service, Hospital Clinic, IDIBAPS, CIBERehd, Villarroel, 170, 08036, Barcelona, Spain.,Physiological Sciences Department I, University of Barcelona, Casanova, 143, 08036, Barcelona, Spain
| | - Vedrana Reichenbach
- Biochemistry & Molecular Genetics Service, Hospital Clinic, IDIBAPS, CIBERehd, Villarroel, 170, 08036, Barcelona, Spain
| | - Amalia Pelegrina
- Liver Surgery & Transplantation Unit, Department of Surgery, ICMDM, Hospital Clinic, IDIBAPS, CIBERehd, Villarroel, 170, 08036, Barcelona, Spain
| | - Constantino Fondevila
- Liver Surgery & Transplantation Unit, Department of Surgery, ICMDM, Hospital Clinic, IDIBAPS, CIBERehd, Villarroel, 170, 08036, Barcelona, Spain
| | - Juan Cg Valdecasas
- Liver Surgery & Transplantation Unit, Department of Surgery, ICMDM, Hospital Clinic, IDIBAPS, CIBERehd, Villarroel, 170, 08036, Barcelona, Spain
| | - Josep Fuster
- Liver Surgery & Transplantation Unit, Department of Surgery, ICMDM, Hospital Clinic, IDIBAPS, CIBERehd, Villarroel, 170, 08036, Barcelona, Spain
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