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Chen J, Han S, Li S, Wang M, Zhu H, Qiao T, Lin T, Zhu T. Comparative Transcriptomics and Gene Knockout Reveal Virulence Factors of Neofusicoccum parvum in Walnut. Front Microbiol 2022; 13:926620. [PMID: 35910616 PMCID: PMC9335079 DOI: 10.3389/fmicb.2022.926620] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2022] [Accepted: 06/17/2022] [Indexed: 12/11/2022] Open
Abstract
Neofusicoccum parvum can cause stem and branch blight of walnut (Juglans spp.), resulting in great economic losses and ecological damage. A total of two strains of N. parvum were subjected to RNA-sequencing after being fed on different substrates, sterile water (K1/K2), and walnut (T1/T2), and the function of ABC1 was verified by gene knockout. There were 1,834, 338, and 878 differentially expressed genes (DEGs) between the K1 vs. K2, T1 vs. K1, and T2 vs. K2 comparison groups, respectively. The expression changes in thirty DEGs were verified by fluorescent quantitative PCR. These thirty DEGs showed the same expression patterns under both RNA-seq and PCR. In addition, ΔNpABC1 showed weaker virulence due to gene knockout, and the complementary strain NpABC1c showed the same virulence as the wild-type strain. Compared to the wild-type and complemented strains, the relative growth of ΔNpABC1 was significantly decreased when grown with H2O2, NaCl, Congo red, chloramphenicol, MnSO4, and CuSO4. The disease index of walnuts infected by the mutants was significantly lower than those infected by the wild-type and complementary strains. This result indicates that ABC1 gene is required for the stress response and virulence of N. parvum and may be involved in heavy metal resistance.
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Affiliation(s)
- Jie Chen
- Department of Forest Protection, College of Forestry, Sichuan Agricultural University, Chengdu, China
| | - Shan Han
- Department of Forest Protection, College of Forestry, Sichuan Agricultural University, Chengdu, China
| | - Shujiang Li
- Department of Forest Protection, College of Forestry, Sichuan Agricultural University, Chengdu, China
| | - Ming Wang
- Ecological Institute, Academy of Sichuan Forestry and Grassland Inventory and Planning, Chengdu, China
| | - Hanmingyue Zhu
- Department of Forest Protection, College of Forestry, Sichuan Agricultural University, Chengdu, China
| | - Tianmin Qiao
- Department of Forest Protection, College of Forestry, Sichuan Agricultural University, Chengdu, China
| | - Tiantian Lin
- Department of Forest Protection, College of Forestry, Sichuan Agricultural University, Chengdu, China
| | - Tianhui Zhu
- Department of Forest Protection, College of Forestry, Sichuan Agricultural University, Chengdu, China
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Balzano L, Alezones J, Diez García N. Identification of maize kernel resistance proteins against Aspergillus flavus by a statistical approach: A predictive model of resistance capacity. BIONATURA 2021. [DOI: 10.21931/rb/2021.06.02.13] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022] Open
Abstract
Although kernel infection by Aspergillus flavus and pre-harvest aflatoxin contamination of Zea mays grain is a significant crop production problem, not only in Venezuela but also around the world, little progress has been made in identifying proteins and metabolic pathways associated with this pathogen resistance. Usually, a protein with a two-fold expression between control and condition is considered a biomarker of some phenomena, but we think it is essential to evaluate its contribution to resistance. That is why we decided to determine the behavior's resistance capacity in terms of expression levels of an identified protein of maize kernels infected with A. flavus by using a multivariate approach. In this work, we identify 47 of 66 differentially expressed spots with a remarkable contribution to resistance against the fungus Aspergillus flavus. We finally test this approach to know if it can be used as a predictive resistance model and probe it by including theoretical and experimental protein expression profiles of other inoculated maize lines.
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Affiliation(s)
- Leandro Balzano
- University of Florida. Department of Microbiology and Cell Science. Gainesville, United States
| | - Jesús Alezones
- Fundación para la Investigación Agrícola DANAC. Carretera San Javier-Guarataro. Estado Yaracuy. Venezuela
| | - Nardy Diez García
- Centro de Investigación Biotecnológicas del Ecuador (CIBE), Facultad de Ciencias de la Vida, Escuela Superior Politécnica del Litoral, ESPOL, Guayaquil, Ecuador
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Servatius P, Kazmaier U. Total Synthesis of Trapoxin A, a Fungal HDAC Inhibitor from Helicoma ambiens. J Org Chem 2018; 83:11341-11349. [DOI: 10.1021/acs.joc.8b01569] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Phil Servatius
- Saarland University, Organic Chemistry I, Campus, Building C4.2, D-66123 Saarbrücken, Germany
| | - Uli Kazmaier
- Saarland University, Organic Chemistry I, Campus, Building C4.2, D-66123 Saarbrücken, Germany
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Kitir B, Maolanon AR, Ohm RG, Colaço AR, Fristrup P, Madsen AS, Olsen CA. Chemical Editing of Macrocyclic Natural Products and Kinetic Profiling Reveal Slow, Tight-Binding Histone Deacetylase Inhibitors with Picomolar Affinities. Biochemistry 2017; 56:5134-5146. [DOI: 10.1021/acs.biochem.7b00725] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Affiliation(s)
- Betül Kitir
- Center
for Biopharmaceuticals and Department for Drug Design and Pharmacology,
Faculty of Health and Medical Sciences, University of Copenhagen, DK-2100 Copenhagen, Denmark
| | - Alex R. Maolanon
- Center
for Biopharmaceuticals and Department for Drug Design and Pharmacology,
Faculty of Health and Medical Sciences, University of Copenhagen, DK-2100 Copenhagen, Denmark
| | - Ragnhild G. Ohm
- Center
for Biopharmaceuticals and Department for Drug Design and Pharmacology,
Faculty of Health and Medical Sciences, University of Copenhagen, DK-2100 Copenhagen, Denmark
| | - Ana R. Colaço
- Department
of Chemistry, Technical University of Denmark, DK-2800 Kongens
Lyngby, Denmark
| | - Peter Fristrup
- Department
of Chemistry, Technical University of Denmark, DK-2800 Kongens
Lyngby, Denmark
| | - Andreas S. Madsen
- Center
for Biopharmaceuticals and Department for Drug Design and Pharmacology,
Faculty of Health and Medical Sciences, University of Copenhagen, DK-2100 Copenhagen, Denmark
| | - Christian A. Olsen
- Center
for Biopharmaceuticals and Department for Drug Design and Pharmacology,
Faculty of Health and Medical Sciences, University of Copenhagen, DK-2100 Copenhagen, Denmark
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Song G, Walley JW. Dynamic Protein Acetylation in Plant-Pathogen Interactions. FRONTIERS IN PLANT SCIENCE 2016; 7:421. [PMID: 27066055 PMCID: PMC4811901 DOI: 10.3389/fpls.2016.00421] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/31/2015] [Accepted: 03/18/2016] [Indexed: 05/04/2023]
Abstract
Pathogen infection triggers complex molecular perturbations within host cells that results in either resistance or susceptibility. Protein acetylation is an emerging biochemical modification that appears to play central roles during host-pathogen interactions. To date, research in this area has focused on two main themes linking protein acetylation to plant immune signaling. Firstly, it has been established that proper gene expression during defense responses requires modulation of histone acetylation within target gene promoter regions. Second, some pathogens can deliver effector molecules that encode acetyltransferases directly within the host cell to modify acetylation of specific host proteins. Collectively these findings suggest that the acetylation level for a range of host proteins may be modulated to alter the outcome of pathogen infection. This review will focus on summarizing our current understanding of the roles of protein acetylation in plant defense and highlight the utility of proteomics approaches to uncover the complete repertoire of acetylation changes triggered by pathogen infection.
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Bourque S, Dutartre A, Hammoudi V, Blanc S, Dahan J, Jeandroz S, Pichereaux C, Rossignol M, Wendehenne D. Type-2 histone deacetylases as new regulators of elicitor-induced cell death in plants. THE NEW PHYTOLOGIST 2011; 192:127-139. [PMID: 21651563 DOI: 10.1111/j.1469-8137.2011.03788.x] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
• Plant resistance to pathogen attack is often associated with a localized programmed cell death called hypersensitive response (HR). How this cell death is controlled remains largely unknown. • Upon treatment with cryptogein, an elicitor of tobacco defence and cell death, we identified NtHD2a and NtHD2b, two redundant isoforms of type-2 nuclear histone deacetylases (HDACs). These HDACs are phosphorylated after a few minutes' treatment, and their rate of mRNAs are rapidly and strongly reduced, leading to a 40-fold decrease after 10 h of treatment. • By using HDAC inhibitors, RNAi- and overexpression-based approaches, we showed that HDACs, and especially NtHD2a/b, act as inhibitors of cryptogein-induced cell death. Moreover, in NtHD2a/b-silenced plants, infiltration with cryptogein led to HR-like symptoms in distal leaves. • Taken together, these results show for the first time that type-2 HDACs, which are specific to plants, act as negative regulators of elicitor-induced cell death in tobacco (Nicotiana tabacum), suggesting that the HR is controlled by post-translational modifications including (de)acetylation of nuclear proteins.
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Affiliation(s)
- Stéphane Bourque
- UMR INRA 1088/CNRS 5184/Université de Bourgogne Plante-Microbe-Environnement, 17 Rue Sully, BP 86510, 21065 Dijon cedex, France
- GDR CNRS N°2688 'Calcium et régulation de l'expression des gènes en contexte normal et pathologique', 31000 Toulouse, France
| | - Agnès Dutartre
- UMR INRA 1088/CNRS 5184/Université de Bourgogne Plante-Microbe-Environnement, 17 Rue Sully, BP 86510, 21065 Dijon cedex, France
| | - Valentin Hammoudi
- UMR INRA 1088/CNRS 5184/Université de Bourgogne Plante-Microbe-Environnement, 17 Rue Sully, BP 86510, 21065 Dijon cedex, France
| | - Sabrina Blanc
- UMR INRA 1088/CNRS 5184/Université de Bourgogne Plante-Microbe-Environnement, 17 Rue Sully, BP 86510, 21065 Dijon cedex, France
| | - Jennifer Dahan
- UMR INRA 1088/CNRS 5184/Université de Bourgogne Plante-Microbe-Environnement, 17 Rue Sully, BP 86510, 21065 Dijon cedex, France
| | - Sylvain Jeandroz
- UPSP PROXISS, AgroSup Dijon, 26 Boulevard du Dr Petitjean, BP 87999, 21079 Dijon cedex, France
| | - Carole Pichereaux
- Plateforme Protéomique Génopole Toulouse Midi-Pyrénées, Institut de Pharmacologie et de Biologie Structurale (IPBS), CNRS, 205 route de Narbonne, F-31077 Toulouse, France and Université Paul Sabatier, Université de Toulouse, F-31077 Toulouse, France
| | - Michel Rossignol
- Plateforme Protéomique Génopole Toulouse Midi-Pyrénées, Institut de Pharmacologie et de Biologie Structurale (IPBS), CNRS, 205 route de Narbonne, F-31077 Toulouse, France and Université Paul Sabatier, Université de Toulouse, F-31077 Toulouse, France
| | - David Wendehenne
- UMR INRA 1088/CNRS 5184/Université de Bourgogne Plante-Microbe-Environnement, 17 Rue Sully, BP 86510, 21065 Dijon cedex, France
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