Permutation analysis of data with multiple binary category choices

Longitudinal Analysis of Data with Multiple Binary Category Choices

In many experiments, subjects mark all categories that apply when responding to a cafeteria or multiple-response question. One exact and two approximate permutation methods are described to analyze binary answers to multiple-response questions in longitudinal experimental designs, wherein the same or matched subjects respond to the same multiple-response question over two or more trials. The described methods provide probabilities, under the null hypothesis, that the multiple binary responses do not differ over trials.

Testing and estimation of proportion (or risk) ratio under the matched-pair design with multiple binary endpoints

The proportion ratio (PR) of responses between an experimental treatment and a control treatment is one of the most commonly used indices to measure the relative treatment effect in a randomized clinical trial. We develop asymptotic and permutation-based procedures for testing equality of treatment effects as well as derive confidence intervals of PRs for multivariate binary matched-pair data under a mixed-effects exponential risk model. To evaluate and compare the performance of these test procedures and interval estimators, we employ Monte Carlo simulation. When the number of matched pairs is large, we find that all test procedures presented here can perform well with respect to Type I error. When the number of matched pairs is small, the permutation-based test procedures developed in this paper is of use. Furthermore, using test procedures (or interval estimators) based on a weighted linear average estimator of treatment effects can improve power (or gain precision) when the treatment effects on all response variables of interest are known to fall in the same direction. Finally, we apply the data taken from a crossover clinical trial that monitored several adverse events of an antidepressive drug to illustrate the practical use of test procedures and interval estimators considered here.

Notes on testing noninferiority in multivariate binary data under the matched-pair design

Since therapeutic efficacy is often measured by multiple endpoints, it will be of use if one can incorporate the information on various variables of response into procedures for testing noninferiority to improve power of a univariate test procedure for each individual variable. On the basis of the proposed mixed effects logistic regression model for multivariate binary data under the matched-pairs design, we develop procedures for testing noninferiority with respect to the odds ratio in multivariate binary data under the matched-pair design. We discuss use of Bonferroni's and Scheffe's methods to control the inflation in Type I error due to multiple tests. We further employ Monte Carlo simulation to evaluate and compare the performance of these test procedures. Finally, we use the data taken from a crossover clinical trial that monitored several adverse events of an antidepressive drug to illustrate the use of test procedures derived here.