Evidence of Echolocation Call Divergence inHipposideros commersoniSensu Stricto (E. Geoffroy, 1803) from Madagascar and Correlation with Body Size

Phylogeography and population genetics of the endemic Malagasy bat, Macronycteris commersoni s.s. (Chiroptera: Hipposideridae)

Macronycteris commersoni (Hipposideridae), a bat species endemic to Madagascar, is widespread across the island and utilizes a range of habitat types including open woodland, degraded habitats, and forested areas from sea level to 1,325 m. Despite being widely distributed, there is evidence that M. commersoni exhibits morphological and bioacoustic variation across its geographical range. We investigated the fine-scale phylogeographic structure of populations in the western half of the island using extensive spatial sampling and sequence data from two mitochondrial DNA regions. Our results indicated several lineages within M. commersoni. Individuals collected from northern Madagascar formed a single monophyletic clade (clade C). A second clade (clade B) included individuals collected from the south-western portion of the island. This second clade displayed more phylogeographical partitioning with differences in mtDNA haplotypes frequency detected between populations collected in different bioclimatic regions. Lineage dispersal, genetic divergence, and timing of expansion events of M. commersoni were probably associated with Pleistocene climate fluctuations. Our data suggest that the northern and the central western regions of Madagascar may have acted as refugia for this species during periods of cooler and drier climate conditions associated with the Pleistocene.

In-flight social calls: a primer for biologists and managers studying echolocation

Recent technological advances have permitted collection of immense data sets through automated recordings that are primarily aimed at capturing bat echolocation. Analyses of echolocation calls are used to identify species, relative abundance, and some aspects of behaviour, such as foraging or commuting. Here we propose that social calls recorded in flight are also valuable tools for understanding bat ecology and behaviour. First, we examine how and why the acoustic structure of social calls differ from echolocation. Differences in form make social calls often, but not always, easy to identify. We then use a case study on in-flight song in Brazilian free-tailed bat (Tadarida brasiliensis (I. Geoffroy, 1824)) to show that what may appear as echolocation may instead be predominantly used for social communication. Next, we review three basic functions of in-flight social calls, including examples of each, and develop a framework for testing these alternative functions using automated recordings. In a second case study, we use automated recordings of the endangered Florida bonneted bat (Eumops floridanus (G.M. Allen, 1932)) to illustrate how behavioural information can be gleaned by examining patterns of social call production. Finally, we discuss why and how social calls provide novel information that can be crucial for conservation and management efforts.

Bats are still not birds in the digital era: echolocation call variation and why it matters for bat species identification

The recording and analysis of echolocation calls are fundamental methods used to study bat distribution, ecology, and behavior. However, the goal of identifying bats in flight from their echolocation calls is not always possible. Unlike bird songs, bat calls show large variation that often makes identification challenging. The problem has not been fully overcome by modern digital-based hardware and software for bat call recording and analysis. Besides providing fundamental insights into bat physiology, ecology, and behavior, a better understanding of call variation is therefore crucial to best recognize limits and perspectives of call classification. We provide a comprehensive overview of sources of interspecific and intraspecific echolocation call variations, illustrating its adaptive significance and highlighting gaps in knowledge. We remark that further research is needed to better comprehend call variation and control for it more effectively in sound analysis. Despite the state-of-art technology in this field, combining acoustic surveys with capture and roost search, as well as limiting identification to species with distinctive calls, still represent the safest way of conducting bat surveys.

Cryptic diversity in Hipposideros commersoni sensu stricto (Chiroptera: Hipposideridae) in the western portion of Madagascar

Background

The Commerson’s leaf-nosed bat, Hipposideros commersoni sensu stricto, is endemic to Madagascar and is relatively common in the western portion of the island, where it is found in areas, including forested zones, from sea level to 1325 m. A previous study on morphological patterns of geographic variation within the species highlighted the presence of two distinct morphotypes; larger individuals in the north portion of the island and smaller individuals in the south. The main aim of this study was to use a combination of craniodental morphology and molecular data (mitochondrial and nuclear) to test previous hypotheses based on morphology and clarify the evolutionary history of the species group.

Methods

We sequenced mitochondrial and nuclear genes from Hipposideros commersoni obtained from the western portion of Madagascar, and compared them with other African species as outgroups. We analyzed the sequence data using Maximum Likelihood and Bayesian phylogenetic inference. Divergence dates were estimated using Bayesian molecular clock approach. Variation in craniodental variables was also assessed from sequenced individuals.

Results

The molecular analyses suggest that H. commersoni is not monophyletic, with strong support for the presence of several independently evolving lineages. Two individuals amongst those sequenced from Isalo (south central) and Itampolo (southwest) form a separate clade (Clade A), distinct from other H. commersoni, and sister to continental African H. vittatus and H. gigas. Within the H. commersoni clade, the molecular data support two geographically distributed clades; one from the south (Clade B) and the other from the north (Clade C), which diverged approximately 3.38 million years ago. Morphometric data were consistent with the molecular analyses, suggesting a north–south break within H. commersoni. However, at some localities, animals from both clades occurred in sympatry and these individuals could not be differentiated based on external and craniodental measurements.

Conclusions

Using a combination of molecular and morphological characters, this study presents evidence of cryptic diversity in H. commersoni on Madagascar. Further fine-scale phylogeographic studies are needed to fully resolve the systematics of H. commersoni. This study highlights the utility of the combined approach in employing both morphological and molecular data to provide insights into the evolutionary history of Malagasy population currently assigned to H. commersoni.

Electronic supplementary material

The online version of this article (doi:10.1186/s12862-015-0510-2) contains supplementary material, which is available to authorized users.