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Number Cited by Other Article(s)
1
Wicki M, Brown DJ, Gurman PM, Raoul J, Legarra A, Swan AA. Combined genomic evaluation of Merino and Dohne Merino Australian sheep populations. Genet Sel Evol 2024;56:69. [PMID: 39350072 PMCID: PMC11440750 DOI: 10.1186/s12711-024-00934-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2024] [Accepted: 09/03/2024] [Indexed: 10/04/2024]  Open
2
Barani S, Miraie Ashtiani SR, Nejati Javaremi A, Khansefid M, Esfandyari H. Optimizing purebred selection to improve crossbred performance. Front Genet 2024;15:1384973. [PMID: 39381139 PMCID: PMC11458422 DOI: 10.3389/fgene.2024.1384973] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2024] [Accepted: 08/29/2024] [Indexed: 10/10/2024]  Open
3
López-Correa RD, Legarra A, Aguilar I. Modeling missing pedigree with metafounders and validating single-step genomic predictions in a small dairy cattle population with a great influence of foreign genetics. J Dairy Sci 2024;107:4685-4692. [PMID: 38310956 DOI: 10.3168/jds.2023-23732] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2023] [Accepted: 12/22/2023] [Indexed: 02/06/2024]
4
Himmelbauer J, Schwarzenbacher H, Fuerst C, Fuerst-Waltl B. Exploring unknown parent groups and metafounders in single-step genomic BLUP: Insights from a simulated cattle population. J Dairy Sci 2024:S0022-0302(24)00950-0. [PMID: 38908687 DOI: 10.3168/jds.2024-24891] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2024] [Accepted: 05/17/2024] [Indexed: 06/24/2024]
5
Melo TP, Zwirtes AK, Silva AA, Lázaro SF, Oliveira HR, Silveira KR, Santos JCG, Andrade WBF, Kluska S, Evangelho LA, Oliveira HN, Tonhati H. Unknown parent groups and truncated pedigree in single-step genomic evaluations of Murrah buffaloes. J Dairy Sci 2024:S0022-0302(24)00847-6. [PMID: 38825116 DOI: 10.3168/jds.2023-24608] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2023] [Accepted: 04/16/2024] [Indexed: 06/04/2024]
6
Zoda A, Ogawa S, Kagawa R, Tsukahara H, Obinata R, Urakawa M, Oono Y. Single-Step Genomic Prediction of Superovulatory Response Traits in Japanese Black Donor Cows. BIOLOGY 2023;12:biology12050718. [PMID: 37237533 DOI: 10.3390/biology12050718] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/19/2023] [Revised: 05/11/2023] [Accepted: 05/12/2023] [Indexed: 05/28/2023]
7
Esrafili Taze Kand Mohammaddiyeh M, Rafat SA, Shodja J, Javanmard A, Esfandyari H. Selective genotyping to implement genomic selection in beef cattle breeding. Front Genet 2023;14:1083106. [PMID: 37007975 PMCID: PMC10064214 DOI: 10.3389/fgene.2023.1083106] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2022] [Accepted: 02/28/2023] [Indexed: 03/19/2023]  Open
8
Genomic evaluation of commercial herds with different pedigree structures using the single-step genomic BLUP in Nelore cattle. Trop Anim Health Prod 2023;55:95. [PMID: 36810697 DOI: 10.1007/s11250-023-03508-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2022] [Accepted: 02/11/2023] [Indexed: 02/23/2023]
9
Kudinov AA, Koivula M, Aamand GP, Strandén I, Mäntysaari EA. Single-step genomic BLUP with many metafounders. Front Genet 2022;13:1012205. [DOI: 10.3389/fgene.2022.1012205] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2022] [Accepted: 10/31/2022] [Indexed: 11/23/2022]  Open
10
Callister AN, Bermann M, Elms S, Bradshaw BP, Lourenco D, Brawner JT. Accounting for population structure in genomic predictions of Eucalyptus globulus. G3 GENES|GENOMES|GENETICS 2022;12:6654591. [PMID: 35920792 PMCID: PMC9434241 DOI: 10.1093/g3journal/jkac180] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/28/2022] [Accepted: 06/29/2022] [Indexed: 12/02/2022]
11
Belay TK, Eikje LS, Gjuvsland AB, Nordbø Ø, Tribout T, Meuwissen T. Correcting for base-population differences and unknown parent groups in single-step genomic predictions of Norwegian Red Cattle. J Anim Sci 2022;100:6618053. [PMID: 35752161 PMCID: PMC9467032 DOI: 10.1093/jas/skac227] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2021] [Accepted: 06/23/2022] [Indexed: 11/15/2022]  Open
12
Strandén I, Aamand GP, Mäntysaari EA. Single-step genomic BLUP with genetic groups and automatic adjustment for allele coding. Genet Sel Evol 2022;54:38. [PMID: 35655157 PMCID: PMC9164359 DOI: 10.1186/s12711-022-00721-x] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2021] [Accepted: 04/13/2022] [Indexed: 11/10/2022]  Open
13
Masuda Y, VanRaden PM, Tsuruta S, Lourenco DAL, Misztal I. Invited review: Unknown-parent groups and metafounders in single-step genomic BLUP. J Dairy Sci 2021;105:923-939. [PMID: 34799109 DOI: 10.3168/jds.2021-20293] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2021] [Accepted: 09/26/2021] [Indexed: 11/19/2022]
14
Fu C, Ostersen T, Christensen OF, Xiang T. Single-step genomic evaluation with metafounders for feed conversion ratio and average daily gain in Danish Landrace and Yorkshire pigs. Genet Sel Evol 2021;53:79. [PMID: 34620083 PMCID: PMC8499570 DOI: 10.1186/s12711-021-00670-x] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2021] [Accepted: 09/02/2021] [Indexed: 11/17/2022]  Open
15
Callister AN, Bradshaw BP, Elms S, Gillies RAW, Sasse JM, Brawner JT. Single-step genomic BLUP enables joint analysis of disconnected breeding programs: an example with Eucalyptus globulus Labill. G3-GENES GENOMES GENETICS 2021;11:6322958. [PMID: 34568915 PMCID: PMC8473980 DOI: 10.1093/g3journal/jkab253] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/23/2021] [Accepted: 07/08/2021] [Indexed: 11/13/2022]
16
Kluska S, Masuda Y, Ferraz JBS, Tsuruta S, Eler JP, Baldi F, Lourenco D. Metafounders May Reduce Bias in Composite Cattle Genomic Predictions. Front Genet 2021;12:678587. [PMID: 34490031 PMCID: PMC8417888 DOI: 10.3389/fgene.2021.678587] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2021] [Accepted: 07/15/2021] [Indexed: 11/13/2022]  Open
17
Tonussi RL, Londoño-Gil M, de Oliveira Silva RM, Magalhães AFB, Amorim ST, Kluska S, Espigolan R, Peripolli E, Pereira ASC, Lôbo RB, Aguilar I, Lourenço DAL, Baldi F. Accuracy of genomic breeding values and predictive ability for postweaning liveweight and age at first calving in a Nellore cattle population with missing sire information. Trop Anim Health Prod 2021;53:432. [PMID: 34373940 DOI: 10.1007/s11250-021-02879-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2021] [Accepted: 07/30/2021] [Indexed: 11/30/2022]
18
Bermann M, Lourenco D, Breen V, Hawken R, Brito Lopes F, Misztal I. Modeling genetic differences of combined broiler chicken populations in single-step GBLUP. J Anim Sci 2021;99:6154135. [PMID: 33649764 PMCID: PMC8355479 DOI: 10.1093/jas/skab056] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2020] [Accepted: 02/17/2021] [Indexed: 11/13/2022]  Open
19
Vandenplas J, Eding H, Calus MP. Technical note: Genetic groups in single-step single nucleotide polymorphism best linear unbiased predictor. J Dairy Sci 2021;104:3298-3303. [DOI: 10.3168/jds.2020-19460] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2020] [Accepted: 10/02/2020] [Indexed: 11/19/2022]
20
Gutierrez-Reinoso MA, Aponte PM, Garcia-Herreros M. Genomic Analysis, Progress and Future Perspectives in Dairy Cattle Selection: A Review. Animals (Basel) 2021;11:599. [PMID: 33668747 PMCID: PMC7996307 DOI: 10.3390/ani11030599] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2020] [Revised: 11/23/2020] [Accepted: 11/24/2020] [Indexed: 12/16/2022]  Open
21
Masuda Y, Tsuruta S, Bermann M, Bradford HL, Misztal I. Comparison of models for missing pedigree in single-step genomic prediction. J Anim Sci 2021;99:6119644. [PMID: 33493284 DOI: 10.1093/jas/skab019] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2020] [Accepted: 01/20/2021] [Indexed: 11/14/2022]  Open
22
Junqueira VS, Lopes PS, Lourenco D, Silva FFE, Cardoso FF. Applying the Metafounders Approach for Genomic Evaluation in a Multibreed Beef Cattle Population. Front Genet 2021;11:556399. [PMID: 33424914 PMCID: PMC7793833 DOI: 10.3389/fgene.2020.556399] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2020] [Accepted: 10/29/2020] [Indexed: 11/23/2022]  Open
23
Meyer K. Impact of missing pedigrees in single-step genomic evaluation. ANIMAL PRODUCTION SCIENCE 2021. [DOI: 10.1071/an21045] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
24
Bermann M, Lourenco D, Misztal I. Technical note: Automatic scaling in single-step genomic BLUP. J Dairy Sci 2020;104:2027-2031. [PMID: 33309381 DOI: 10.3168/jds.2020-18969] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2020] [Accepted: 09/16/2020] [Indexed: 11/19/2022]
25
Tsuruta S, Lawlor TJ, Lourenco DAL, Misztal I. Bias in genomic predictions by mating practices for linear type traits in a large-scale genomic evaluation. J Dairy Sci 2020;104:662-677. [PMID: 33162076 DOI: 10.3168/jds.2020-18668] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2020] [Accepted: 08/19/2020] [Indexed: 12/17/2022]
26
Garcia ALS, Masuda Y, Tsuruta S, Miller S, Misztal I, Lourenco D. Indirect predictions with a large number of genotyped animals using the algorithm for proven and young. J Anim Sci 2020;98:5831156. [PMID: 32374831 PMCID: PMC7263398 DOI: 10.1093/jas/skaa154] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2020] [Accepted: 04/30/2020] [Indexed: 11/21/2022]  Open
27
Macedo FL, Christensen OF, Astruc JM, Aguilar I, Masuda Y, Legarra A. Bias and accuracy of dairy sheep evaluations using BLUP and SSGBLUP with metafounders and unknown parent groups. Genet Sel Evol 2020;52:47. [PMID: 32787772 PMCID: PMC7425573 DOI: 10.1186/s12711-020-00567-1] [Citation(s) in RCA: 36] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2020] [Accepted: 08/04/2020] [Indexed: 11/29/2022]  Open
28
Kudinov A, Mäntysaari E, Aamand G, Uimari P, Strandén I. Metafounder approach for single-step genomic evaluations of Red Dairy cattle. J Dairy Sci 2020;103:6299-6310. [DOI: 10.3168/jds.2019-17483] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2019] [Accepted: 03/09/2020] [Indexed: 01/01/2023]
29
Granado-Tajada I, Legarra A, Ugarte E. Exploring the inclusion of genomic information and metafounders in Latxa dairy sheep genetic evaluations. J Dairy Sci 2020;103:6346-6353. [DOI: 10.3168/jds.2019-18033] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2019] [Accepted: 02/25/2020] [Indexed: 11/19/2022]
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