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Malheiros JM, Reolon HG, Bosquini BG, Baldi F, Lourenco D, Fragomeni BO, Silva RMO, Paz CCP, Stafuzza NB. Identification of biological pathways and putative candidate genes for residual feed intake in a tropically adapted beef cattle breed by plasma proteome analysis. J Proteomics 2025; 312:105361. [PMID: 39638144 DOI: 10.1016/j.jprot.2024.105361] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2024] [Revised: 11/11/2024] [Accepted: 12/01/2024] [Indexed: 12/07/2024]
Abstract
This study identified potential biomarkers for feed efficiency by blood plasma proteome analysis of a tropically adapted beef cattle breed. Two experimental groups were selected based on residual feed intake (RFI). The proteome was investigated by LC-MS/MS in a data-dependent acquisition mode. After quality control, 123 differentially abundant proteins (DAPs) were identified between the two experimental groups. Among DAPs with the highest absolute log-fold change values, the PRDM2, KRT5, UGGT1, DENND5B, B2M, SLC44A2, SLC7A2, PTPRC, and FETUB were highlighted as potential biomarkers because of their functions that may contribute to RFI. Furthermore, functional enrichment analysis revealed several biological processes, molecular functions and pathways that contributes to RFI, such as cell signaling, cellular responses to stimuli, immune system, calcium, hormones, metabolism and functions of proteins, lipids and carbohydrates. Protein-protein interaction analysis identified 32 and 11 DAPs as important nodes based on their interactions in the high- and low-RFI groups, respectively. This study represents the first comprehensive profiling of the blood plasma proteome of a tropically adapted beef cattle breed and provides valuable insights into the potential roles of these DAPs in key biological processes and pathways, contributing to our understanding of the mechanisms underlying feed efficiency in tropically adapted beef cattle. SIGNIFICANCE: LC-MS/MS analysis was performed to investigate changes in the blood plasma proteome associated with residual feed intake (RFI) in a tropically adapted beef cattle breed (Bos taurus taurus). Some putative biomarkers were identified to distinguish the high-RFI to low-RFI animals, based on their log-fold change value or on their protein-protein interaction network, which provide helpful sources in developing novel selection strategies for breeding programs. Our findings also revealed valuable insights into the metabolic pathways and biological processes that contribute to RFI in beef cattle, such as those closely linked to cell signaling, cellular responses to stimuli, immune system, calcium, hormones, metabolism and functions of proteins, lipids and carbohydrates.
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Affiliation(s)
- Jessica M Malheiros
- Beef Cattle Research Center, Animal Science Institute, 14174-000 Sertãozinho, SP, Brazil
| | - Henrique G Reolon
- Beef Cattle Research Center, Animal Science Institute, 14174-000 Sertãozinho, SP, Brazil
| | - Bruna G Bosquini
- Beef Cattle Research Center, Animal Science Institute, 14174-000 Sertãozinho, SP, Brazil
| | - Fernando Baldi
- Department of Animal Science, School of Agricultural and Veterinary Sciences, São Paulo State University, 14884-900 Jaboticabal, SP, Brazil
| | - Daniela Lourenco
- Department of Animal and Dairy Science, University of Georgia, 30602 Athens, GA, USA.
| | - Breno O Fragomeni
- Department of Animal Science, University of Connecticut, 06269 Storrs, CT, USA.
| | | | - Claudia C P Paz
- Sustainable Livestock Research Center, Animal Science Institute, 15130-000 São José do Rio Preto, SP, Brazil
| | - Nedenia B Stafuzza
- Beef Cattle Research Center, Animal Science Institute, 14174-000 Sertãozinho, SP, Brazil.
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de Freitas AC, Reolon HG, Abduch NG, Baldi F, Silva RMO, Lourenco D, Fragomeni BO, Paz CCP, Stafuzza NB. Proteomic identification of potential biomarkers for heat tolerance in Caracu beef cattle using high and low thermotolerant groups. BMC Genomics 2024; 25:1079. [PMID: 39538142 PMCID: PMC11562314 DOI: 10.1186/s12864-024-11021-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2024] [Accepted: 11/08/2024] [Indexed: 11/16/2024] Open
Abstract
BACKGROUND Heat stress has deleterious effects on physiological and performance traits in livestock. Within this context, using tropically adapted cattle breeds in pure herds or terminal crossbreeding schemes to explore heterosis is attractive for increasing animal production in warmer climate regions. This study aimed to identify biological processes, pathways, and potential biomarkers related to thermotolerance in Caracu, a tropically adapted beef cattle breed, by proteomic analysis of blood plasma. To achieve this goal, 61 bulls had their thermotolerance evaluated through a heat tolerance index. A subset of 14 extreme animals, including the seven most thermotolerant (HIGH group) and the seven least thermotolerant (LOW group), had their blood plasma samples used for proteomic analysis by liquid chromatography coupled to tandem mass spectrometry (LC-MS/MS). The differentially regulated proteins detected between HIGH and LOW groups were used to perform functional enrichment analysis and a protein-protein interaction network analysis. RESULTS A total of 217 proteins were detected only in the HIGH thermotolerant group and 51 only in the LOW thermotolerant group. In addition, 81 and 87 proteins had significantly higher and lower abundancies in the HIGH group, respectively. Regarding proteins with the highest absolute log-fold change values, we highlighted those encoded by DUSP5, IGFALS, ROCK2, RTN4, IRAG1, and NNT genes based on their functions. The functional enrichment analysis detected several biological processes, molecular functions, and pathways related to cellular responses to stress, immune system, complement system, and hemostasis in both HIGH and LOW groups, in addition to terms and pathways related to lipids and calcium only in the HIGH group. Protein-protein interaction (PPI) network revealed as important nodes many proteins with roles in response to stress, hemostasis, immune system, inflammation, and homeostasis. Additionally, proteins with high absolute log-fold change values and proteins detected as essential nodes by PPI analysis highlighted herein are potential biomarkers for thermotolerance, such as ADRA1A, APOA1, APOB, APOC3, C4BPA, CAT, CFB, CFH, CLU, CXADR, DNAJB1, DNAJC13, DUSP5, FGA, FGB, FGG, HBA, HBB, HP, HSPD1, IGFALS, IRAG1, KNG1, NNT, OSGIN1, PROC, PROS1, ROCK2, RTN4, RYR1, TGFB2, VLDLR, VTN, and VWF. CONCLUSIONS Identifying potential biomarkers, molecular mechanisms and pathways that act in response to heat stress in tropically adapted beef cattle contributes to developing strategies to improve performance and welfare traits in livestock under tropical climates.
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Affiliation(s)
- Ana Claudia de Freitas
- Beef Cattle Research Center, Animal Science Institute, Sertãozinho, SP, 14160-900, Brazil
- Agricultural Research Agency of the State of Minas Gerais (EPAMIG), Patos de Minas, MG, 38709-899, Brazil
| | - Henrique G Reolon
- Beef Cattle Research Center, Animal Science Institute, Sertãozinho, SP, 14160-900, Brazil
- Department of Animal Science, School of Agricultural and Veterinary Sciences, São Paulo State University (UNESP), Jaboticabal, SP, 14884-900, Brazil
| | - Natalya G Abduch
- Beef Cattle Research Center, Animal Science Institute, Sertãozinho, SP, 14160-900, Brazil
| | - Fernando Baldi
- Department of Animal Science, School of Agricultural and Veterinary Sciences, São Paulo State University (UNESP), Jaboticabal, SP, 14884-900, Brazil
| | | | - Daniela Lourenco
- Department of Animal and Dairy Science, University of Georgia, Athens, GA, 30602, USA
| | | | - Claudia C P Paz
- Sustainable Livestock Research Center, Animal Science Institute, São José do Rio Preto, SP, 15130-000, Brazil
| | - Nedenia B Stafuzza
- Beef Cattle Research Center, Animal Science Institute, Sertãozinho, SP, 14160-900, Brazil.
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Arfuso F, Minuti A, Liotta L, Giannetto C, Trevisi E, Piccione G, Lopreiato V. Stress and inflammatory response of cows and their calves during peripartum and early neonatal period. Theriogenology 2023; 196:157-166. [PMID: 36423510 DOI: 10.1016/j.theriogenology.2022.11.019] [Citation(s) in RCA: 15] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2022] [Revised: 11/09/2022] [Accepted: 11/10/2022] [Indexed: 11/16/2022]
Abstract
Stress, inflammatory response, and their relationship were investigated in Simmental cows during the transition period (N = 8; 5 multiparous and 3 primiparous) and in their calves (N = 8; 5 heifers and 3 bulls). From cows, blood was collected at days -21 (±4), 0, +1, +7, and +21 days relative to calving. From calves, blood was collected after birth before colostrum intake (0) and then at 1, 7, and 15 days of age. Cortisol, Interleukin 6 (IL-6) and haptoglobin concentration was assessed by ELISA technique; white blood cells (WBC) were assessed using an ADVIA 2120 Hematology System machine. One-way ANOVA showed an effect of time for all the investigated parameters (P < 0.001) except for lymphocytes in peripartal cows. At calving and 1 d after, cortisol concentration was negatively correlated with levels of IL-6, WBC, and monocytes, whereas levels of IL-6 were positively correlated with WBC, neutrophils, and monocytes count. Cortisol, IL-6, haptoglobin, WBC and all leukocyte populations were affected by the age of neonatal calves (P < 0.001) except for neutrophils. A negative correlation between cortisol and IL-6, neutrophils, monocytes and haptoglobin was found at 15 days of age. A positive correlation between IL-6 and haptoglobin at day 15 of age, and with neutrophils and monocytes at days 7 and 15 of age was found. A positive correlation was obtained between cortisol levels measured in cows around calving and those obtained in calves after birth before colostrum intake (r = 0.83), and between IL-6 concentrations obtained from cows at calving and 1 d after and those obtained in calves at day 1 of age, after the colostrum intake (r = 0.93 and 0.79, respectively). The study suggests that immune function of peripartal cows is in an active state and that, in addition to other well-known factors driving the changes of parameters herein investigated, cortisol could have a role in the immune-modulatory adjustment during peripartum in cows. Furthermore, it can be hypothesized that cortisol is transferred from the cow to newborn calf through the placenta only and not through colostrum, whereas IL-6 levels in calves during the 24 h after birth seem to be influenced by IL-6 values measured in cows around calving due to its transfer through colostrum.
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Affiliation(s)
- Francesca Arfuso
- Department of Veterinary Sciences, University of Messina, Polo University Annunziata, 98168, Messina, Italy
| | - Andrea Minuti
- Department of Animal Sciences, Food and Nutrition (DiANA), Faculty of Agriculture, Food and Environmental Sciences, Università Cattolica del Sacro Cuore, 29122, Piacenza, Italy
| | - Luigi Liotta
- Department of Veterinary Sciences, University of Messina, Polo University Annunziata, 98168, Messina, Italy
| | - Claudia Giannetto
- Department of Veterinary Sciences, University of Messina, Polo University Annunziata, 98168, Messina, Italy.
| | - Erminio Trevisi
- Department of Animal Sciences, Food and Nutrition (DiANA), Faculty of Agriculture, Food and Environmental Sciences, Università Cattolica del Sacro Cuore, 29122, Piacenza, Italy
| | - Giuseppe Piccione
- Department of Veterinary Sciences, University of Messina, Polo University Annunziata, 98168, Messina, Italy
| | - Vincenzo Lopreiato
- Department of Veterinary Sciences, University of Messina, Polo University Annunziata, 98168, Messina, Italy
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Peetsalu K, Niine T, Loch M, Dorbek-Kolin E, Tummeleht L, Orro T. Effect of colostrum on the acute-phase response in neonatal dairy calves. J Dairy Sci 2022; 105:6207-6219. [DOI: 10.3168/jds.2021-21562] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2021] [Accepted: 03/11/2022] [Indexed: 12/29/2022]
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Characteristics of the Oxidative Status in Dairy Calves Fed at Different Milk Replacer Levels and Weaned at 14 Weeks of Age. Antioxidants (Basel) 2021; 10:antiox10020260. [PMID: 33567587 PMCID: PMC7915232 DOI: 10.3390/antiox10020260] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2020] [Revised: 01/26/2021] [Accepted: 02/02/2021] [Indexed: 11/16/2022] Open
Abstract
A paradigm shift in the way of rearing heifer calves from restricted feeding and early weaning towards greater feed allowances and later weaning ages is ongoing. We aimed at characterizing the oxidative status in Holstein heifer calves fed with milk replacer (MR) at either a restrictive (RES) or a high (HIGH) level for 14 weeks. We compared two groups: HIGH (10 L MR/d, n = 18) and RES (5.7 L/d, n = 19) from day five until week 14 of life. In blood samples collected at birth, and then fortnightly from week 8–16, and in week 20, the antioxidative capacity measured as ferric reducing ability of plasma (FRAP), oxidative damage of lipids measured as thiobarbituric acid reactive substances (TBARS) and oxidative damage of proteins measured as advanced oxidation products of proteins (AOPP), free radicals measured as reactive oxidative metabolites (dROM), and the glutathione peroxidase (GSH-Px) activity, as well as leptin, adiponectin and haptoglobin were assessed. The time course of these variables during the first 20 weeks of life showed characteristic patterns; group differences were limited to adiponectin, AOPP, and FRAP. RES calves had lower growth rates, showed signs of hunger, but did not differ from HIGH in their intake of solid starter feed and in health status. This work characterizes the changes in oxidative status of dairy calves with increasing age and confirms the benefits of a high feeding plane with regard to welfare and development.
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Kargar S, Roshan M, Ghoreishi SM, Akhlaghi A, Kanani M, Abedi Shams-Abadi AR, Ghaffari MH. Extended colostrum feeding for 2 weeks improves growth performance and reduces the susceptibility to diarrhea and pneumonia in neonatal Holstein dairy calves. J Dairy Sci 2020; 103:8130-8142. [PMID: 32684449 DOI: 10.3168/jds.2020-18355] [Citation(s) in RCA: 31] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2020] [Accepted: 05/07/2020] [Indexed: 01/21/2023]
Abstract
The objective of this study was to determine the effect of partial replacement of whole milk with colostrum on the growth performance and health status of Holstein dairy calves. Neonatal heifer calves (n = 144; 2 d of age; 39.3 ± 0.82 kg of body weight, BW; mean ± SE) were assigned randomly to 3 groups with partial replacement of pasteurized whole milk with pasteurized colostrum at 0 (C0; 0 kg/d of colostrum + 5 kg/d of whole milk), 350 g (C350; 0.350 kg/d of colostrum + 4.650 kg/d of whole milk), or 700 g (C700; 0.700 kg/d of colostrum + 4.300 kg/d of whole milk) for 14 d; there were no refusals of liquid feed. From d 15 onward, the calves were fed with 5 kg/d of pasteurized whole milk, weaned on d 61, and monitored until d 81 of life. Throughout the study, the calves had free access to fresh clean water and calf starter. Partial replacement of whole milk with colostrum increased liquid feed dry matter intake (DMI) but decreased milk DMI; however, intakes of starter DMI, total DMI, metabolizable energy, crude protein, and ether extract were not affected by treatments. Overall, the C700 calves recorded greater weaning weight, final BW, heart girth change, feed efficiency, and average daily gain (ADG). The calves fed milk had a higher chance of having rectal temperature ≥39.4°C and general appearance score ≥2 compared with those receiving colostrum in their milk. Diarrhea was more prevalent in C0 versus C700 calves. The occurrence of pneumonia tended to be higher in milk-fed calves compared with C350 and C700 animals. Colostrum feeding resulted in fewer days with a rectal temperature ≥39.4°C, general appearance ≥2, diarrhea, and pneumonia. We computed Cliff's delta (effect sizes) of the extended colostrum feeding (C350 vs. C0, C700 vs. C0, and C700 vs. C350) on starter and milk DMI, ADG, BW, and feed efficiency. In C350 calves, the effect sizes (Cliff's delta) for milk DMI, ADG, BW, and feed efficiency were positive and small, but negative in C700 calves. Compared with C350 treatment, C700 treatment resulted in greater final BW with moderate effect size. Positive and moderate effects of feeding colostrum (C700 vs. C0) were observed on postweaning ADG and final BW. The findings showed that the inclusion of 700 g of colostrum in 5 kg of milk may be beneficial to the growth and health of dairy calves.
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Affiliation(s)
- S Kargar
- Department of Animal Science, School of Agriculture, Shiraz University, Shiraz 71441-65186, Iran.
| | - M Roshan
- Department of Animal Science, School of Agriculture, Shiraz University, Shiraz 71441-65186, Iran
| | - S M Ghoreishi
- Department of Animal Science, School of Agriculture, Shiraz University, Shiraz 71441-65186, Iran
| | - A Akhlaghi
- Department of Animal Science, School of Agriculture, Shiraz University, Shiraz 71441-65186, Iran
| | - M Kanani
- Department of Animal Science, School of Agriculture, Shiraz University, Shiraz 71441-65186, Iran
| | - A R Abedi Shams-Abadi
- Department of Animal Science, School of Agriculture, Shiraz University, Shiraz 71441-65186, Iran
| | - M H Ghaffari
- Institute of Animal Science, Physiology and Hygiene Unit, University of Bonn, 53115 Bonn, Germany.
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