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Kreitlow A, Becker A, Schotte U, Malorny B, Plötz M, Abdulmawjood A. Establishment and validation of a loop-mediated isothermal amplification (LAMP) assay targeting the ttrRSBCA locus for rapid detection of Salmonella spp. in food. Food Control 2021. [DOI: 10.1016/j.foodcont.2021.107973] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Domesle KJ, Young SR, Ge B. Rapid Screening for Salmonella in Raw Pet Food by Loop-Mediated Isothermal Amplification. J Food Prot 2021; 84:399-407. [PMID: 33057673 DOI: 10.4315/jfp-20-365] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2020] [Accepted: 10/10/2020] [Indexed: 01/13/2023]
Abstract
ABSTRACT Raw pet food, composed of raw meat and vegetables, has increased in popularity in recent years. Multiple surveys and frequent recalls indicate that this commodity has a high risk of contamination with Salmonella and other foodborne pathogens. Improved screening methods are needed to meet the growing demand for testing. This matrix verification study aimed to apply a Salmonella loop-mediated isothermal amplification (LAMP) method, recently completed multilaboratory validation in dry dog food, in several raw pet food matrices, following the U.S. Food and Drug Administration (FDA)'s method validation guidelines. Five types of raw pet food, consisting of freeze-dried beef and chicken treats and frozen beef, pork, and turkey complete foods, were evaluated. For each matrix, two sets of ten 25-g test portions (seven inoculated with ≤30 cells of Salmonella Typhimurium and three uninoculated controls) were examined. One set was preenriched in buffered peptone water and the other one was preenriched in lactose broth, which was followed by LAMP screening using two isothermal master mixes (ISO-001 and ISO-004). All results were confirmed by culture as specified in the FDA Bacteriological Analytical Manual (BAM). The LAMP method accurately detected Salmonella in all inoculated test portions of the five raw pet food samples, regardless of the preenrichment broth used. Positive results could be obtained within 4 min of the LAMP run using the ISO-004 master mix. All uninoculated controls tested negative using LAMP or BAM. In addition, one turkey-based complete pet food sample was found to be already contaminated with three Salmonella serovars harboring multiple antimicrobial resistance genes. The Salmonella LAMP method offers a rapid, reliable, and robust tool for routine screening of Salmonella in raw pet food, which will help better ensure product safety and protect public health. HIGHLIGHTS
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Affiliation(s)
- Kelly J Domesle
- Division of Animal and Food Microbiology, Office of Research, Center for Veterinary Medicine, U.S. Food and Drug Administration, 8401 Muirkirk Road, Laurel, Maryland 20708, USA (ORCID: https://orcid.org/0000-0003-1873-5091 [K.J.D.]; https://orcid.org/0000-0001-6958-9907 [S.R.Y.]; https://orcid.org/0000-0001-7995-7427 [B.G.])
| | - Shenia R Young
- Division of Animal and Food Microbiology, Office of Research, Center for Veterinary Medicine, U.S. Food and Drug Administration, 8401 Muirkirk Road, Laurel, Maryland 20708, USA (ORCID: https://orcid.org/0000-0003-1873-5091 [K.J.D.]; https://orcid.org/0000-0001-6958-9907 [S.R.Y.]; https://orcid.org/0000-0001-7995-7427 [B.G.])
| | - Beilei Ge
- Division of Animal and Food Microbiology, Office of Research, Center for Veterinary Medicine, U.S. Food and Drug Administration, 8401 Muirkirk Road, Laurel, Maryland 20708, USA (ORCID: https://orcid.org/0000-0003-1873-5091 [K.J.D.]; https://orcid.org/0000-0001-6958-9907 [S.R.Y.]; https://orcid.org/0000-0001-7995-7427 [B.G.])
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Nguyen AV, Orlofsky A, Pubill K, Tawde M, Li G, Mata D, Bermudes O, Fernandez M, Santana J, Kim W, Chimbay E, Kim Y, Nguyen T, Fox M, Eralte J, Metz M, Smyth DS, Panzeca C, Khan MI. Loop-Mediated Isothermal Amplification (LAMP) as a Rapid, Affordable and Effective Tool to Involve Students in Undergraduate Research. Front Microbiol 2020; 11:603381. [PMID: 33362748 PMCID: PMC7756096 DOI: 10.3389/fmicb.2020.603381] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2020] [Accepted: 11/09/2020] [Indexed: 11/13/2022] Open
Abstract
Undergraduate research (UR) is a high-impact practice (HIP) to engage undergraduate student in science, technology, engineering and mathematics (STEM), especially from underrepresented groups. UR experiences (UREs) can be integrated into the classroom, making authentic research experiences inclusive and available to all students. However, developing UR pedagogy can be challenging for faculty in resource-limited labs, such as community colleges and small liberal arts colleges. Often molecular biology research methods are expensive, time-consuming and need equipment not readily available or affordable in small schools. Polymerase chain reaction (PCR) is one of the most commonly used techniques in research labs and many UREs. We have investigated loop-mediated isothermal amplification (LAMP) as an inexpensive, accessible alternative to PCR for DNA amplification enabling the identification of microorganisms in the context of UREs. LAMP does not require expensive instrumentation or reagents and uses equipment commonly found in teaching labs. By performing the technique, students learn several key scientific skills that will be useful in their undergraduate or graduate STEM careers. We designed guided independent research experiences for several undergraduates that included the use of LAMP. Students successfully applied the technique to culture samples of common environmental bacteria, including Escherichia coli, Salmonella spp., Staphylococcus aureus, and Enterococcus, and were in addition, able to detect both Salmonella and Enterococcus in directly sampled environmental waters. To highlight the accessibility and affordability of this URE, a simple boiling method was used for DNA preparation from environmental samples. Student response data show positive attitudes toward UR when LAMP is utilized as a research tool to tackle relevant biological questions. The feasibility of using simplified LAMP in UREs points to a potential, more expanded application to public engagement with science and broader and more inclusive interactions with the research community.
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Affiliation(s)
- Andrew V Nguyen
- Department of Biological Sciences and Geology, The City University of New York, Queensborough Community College, Bayside, NY, United States
| | - Amos Orlofsky
- Department of Biological Sciences and Geology, The City University of New York, Queensborough Community College, Bayside, NY, United States
| | - Kaylynn Pubill
- Department of Biological Sciences and Geology, The City University of New York, Queensborough Community College, Bayside, NY, United States
| | - Mangala Tawde
- Department of Biological Sciences and Geology, The City University of New York, Queensborough Community College, Bayside, NY, United States
| | - Gaozhen Li
- Department of Biological Sciences and Geology, The City University of New York, Queensborough Community College, Bayside, NY, United States
| | - Diana Mata
- Department of Biological Sciences and Geology, The City University of New York, Queensborough Community College, Bayside, NY, United States
| | - Oscar Bermudes
- Department of Biological Sciences and Geology, The City University of New York, Queensborough Community College, Bayside, NY, United States
| | - Miguel Fernandez
- Department of Biological Sciences and Geology, The City University of New York, Queensborough Community College, Bayside, NY, United States
| | - Jonathan Santana
- Department of Biological Sciences and Geology, The City University of New York, Queensborough Community College, Bayside, NY, United States
| | - Woochul Kim
- Department of Biological Sciences and Geology, The City University of New York, Queensborough Community College, Bayside, NY, United States
| | - Enzon Chimbay
- Department of Biological Sciences and Geology, The City University of New York, Queensborough Community College, Bayside, NY, United States
| | - Yeeun Kim
- Department of Biological Sciences and Geology, The City University of New York, Queensborough Community College, Bayside, NY, United States
| | - Trieu Nguyen
- Department of Biological Sciences and Geology, The City University of New York, Queensborough Community College, Bayside, NY, United States
| | - Malcolm Fox
- Department of Biological Sciences and Geology, The City University of New York, Queensborough Community College, Bayside, NY, United States
| | - Janelly Eralte
- Department of Natural Sciences, Mercy College, Dobbs Ferry, NY, United States
| | - Molly Metz
- Department of Natural Sciences and Mathematics, Eugene Lang College of Liberal Arts of the New School, New York, NY, United States
| | - Davida S Smyth
- Department of Natural Sciences and Mathematics, Eugene Lang College of Liberal Arts of the New School, New York, NY, United States
| | - Caterina Panzeca
- Department of Science, SUNY Maritime College, New York, NY, United States
| | - Mazhar I Khan
- Department of Pathobiology and Veterinary Science, College of Agriculture, Health and Natural Resources, Storrs, CT, United States
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Chylewska A, Ogryzek M, Makowski M. Modern Approach to Medical Diagnostics - the Use of Separation Techniques in Microorganisms Detection. Curr Med Chem 2019; 26:121-165. [DOI: 10.2174/0929867324666171023164813] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2016] [Revised: 04/20/2017] [Accepted: 05/20/2016] [Indexed: 11/22/2022]
Abstract
Background:Analytical chemistry and biotechnology as an interdisciplinary fields of science have been developed during many years and are experiencing significant growth, to cover a wide range of microorganisms separation techniques and methods, utilized for medical therapeutic and diagnostic purposes. Currently scientific reports contribute by introducing electrophoretical and immunological methods and formation of devices applied in food protection (avoiding epidemiological diseases) and healthcare (safety ensuring in hospitals).Methods:Electrophoretic as well as nucleic-acid-based or specific immunological methods have contributed tremendously to the advance of analyses in recent three decades, particularly in relation to bacteria, viruses and fungi identifications, especially in medical in vitro diagnostics, as well as in environmental or food protection.Results:The paper presents the pathogen detection competitiveness of these methods against conventional ones, which are still too time consuming and also labor intensive. The review is presented in several parts following the current trends in improved pathogens separation and detection methods and their subsequent use in medical diagnosis.Discussion:Part one, consists of elemental knowledge about microorganisms as an introduction to their characterization: descriptions of divisions, sizes, membranes (cells) components. Second section includes the development, new technological and practical solution descriptions used in electrophoretical procedures during microbes analyses, with special attention paid to bio-samples analyses like blood, urine, lymph or wastewater. Third part covers biomolecular areas that have created a basis needed to identify the progress, limitations and challenges of nucleic-acid-based and immunological techniques discussed to emphasize the advantages of new separative techniques in selective fractionating of microorganisms.
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Affiliation(s)
- Agnieszka Chylewska
- Laboratory of Intermolecular Interactions, Faculty of Chemistry, University of Gdansk, Wita Stwosza 63, 80- 308 Gdansk, Poland
| | - Małgorzata Ogryzek
- Laboratory of Intermolecular Interactions, Faculty of Chemistry, University of Gdansk, Wita Stwosza 63, 80- 308 Gdansk, Poland
| | - Mariusz Makowski
- Laboratory of Intermolecular Interactions, Faculty of Chemistry, University of Gdansk, Wita Stwosza 63, 80- 308 Gdansk, Poland
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Kogovšek P, Ambrožič-Avguštin J, Dovč A, Dreo T, Hristov H, Krapež U, Ravnikar M, Slavec B, Lotrič M, Žel J, Zorman Rojs O. Loop-mediated isothermal amplification: rapid molecular detection of virulence genes associated with avian pathogenic Escherichia coli in poultry. Poult Sci 2019; 98:1500-1510. [PMID: 30476321 PMCID: PMC6377436 DOI: 10.3382/ps/pey516] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2018] [Accepted: 10/18/2018] [Indexed: 11/20/2022] Open
Abstract
Infections with pathogenic Escherichia coli can lead to different animal- and human-associated diseases. E. coli infections are common in intensive poultry farming, and important economic losses can be expected during infections with avian pathogenic E. coli (APEC) strains followed by colibacillosis. Loop-mediated isothermal amplification (LAMP) assays were developed for rapid detection of 3 APEC-associated virulence genes: sitA, traT, and ompT. All 3 LAMP assays are shown to be specific, repeatable, and reproducible. High sensitivities of the assays are shown, where as few as 1,000 bacterial cells/mL can be detected in different matrices. On-site applicability of this LAMP method is demonstrated through testing of different sample types, from animal swabs and tissues, and from environmental samples collected from 6 commercial poultry farms. All 3 virulence genes were detected at high rates (above 85%) in samples from layer and broiler chickens with clinical signs and, interestingly, high prevalence of those genes was detected also in samples collected from clinically healthy broiler flock (above 75%) while lower prevalence was observed in remaining 3 clinically healthy chicken flocks (less than 75%). Importantly, these virulence genes were detected in almost all of the air samples from 11 randomly selected poultry houses, indicating air as an important route of E. coli spread. Three LAMP assays that target APEC-associated virulence genes are shown to be sensitive and robust and are therefore applicable for rapid on-site testing of various sample types, from animal swabs to air. This on-site LAMP testing protocol offers rapid diagnostics, with results obtained in <35 min, and it can be applied to other important microorganisms to allow the required prompt measures to be taken.
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Affiliation(s)
| | | | - Alenka Dovč
- Veterinary Faculty, Institute for Poultry, Birds, Small Mammals and Reptiles, University of Ljubljana, 1000 Ljubljana, Slovenia
| | - Tanja Dreo
- National Institute of Biology, 1000 Ljubljana, Slovenia
| | - Hristo Hristov
- Biotechnical Faculty, University of Ljubljana, 1000 Ljubljana, Slovenia
| | - Uroš Krapež
- Veterinary Faculty, Institute for Poultry, Birds, Small Mammals and Reptiles, University of Ljubljana, 1000 Ljubljana, Slovenia
| | - Maja Ravnikar
- National Institute of Biology, 1000 Ljubljana, Slovenia.,Wine Research Centre, University of Nova Gorica, 5000 Nova Gorica, Slovenia
| | - Brigita Slavec
- Veterinary Faculty, Institute for Poultry, Birds, Small Mammals and Reptiles, University of Ljubljana, 1000 Ljubljana, Slovenia
| | | | - Jana Žel
- National Institute of Biology, 1000 Ljubljana, Slovenia
| | - Olga Zorman Rojs
- Veterinary Faculty, Institute for Poultry, Birds, Small Mammals and Reptiles, University of Ljubljana, 1000 Ljubljana, Slovenia
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Han C, Niu X, Liu L, Li J, Li J, Yao S, Song X, Gao H, Gao Y, Qi X, Zeng X, Wang Y, Wang X. Development of a loop-mediated isothermal amplification assay for the detection of chicken anemia virus. Poult Sci 2019; 98:1176-1180. [PMID: 30544152 DOI: 10.3382/ps/pey495] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2018] [Accepted: 11/30/2018] [Indexed: 11/20/2022] Open
Abstract
Chicken anemia virus (CAV) infection has been reported in various poultry industries worldwide. Since CAV infection is becoming increasingly prevalent, especially in local chickens of China, rapid CAV detection has become essential. The conventional diagnostic methods are time consuming and need special expertise. Therefore, in this study, we developed a specific and sensitive loop-mediated isothermal amplification (LAMP) assay for CAV detection by using multiple sequence alignment of VP2. This assay was performed at 61°C for 1 h, and there was no non-specific reaction to common avian disease viruses. The detection limit was 65 copies of viral DNA; thus, this assay showed similar sensitivity to quantitative polymerase chain reaction (qPCR) but it was more sensitive than conventional PCR. Moreover, this assay was performed using clinical samples. The LAMP assay results were 83.6% correlated to the PCR results of the clinical samples, indicating that this method is an effective tool for the rapid detection of CAV.
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Affiliation(s)
- Chunyan Han
- Division of Avian Infectious Diseases, State Key Laboratory of Veterinary Biotechnology, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin, 150069, China.,State Forestry Administration Key Laboratory of Wildlife Conservation, College of Wildlife Resources, Northeast Forestry University, Harbin 150040, China
| | - Xinxin Niu
- State Forestry Administration Key Laboratory of Wildlife Conservation, College of Wildlife Resources, Northeast Forestry University, Harbin 150040, China
| | - Lanlan Liu
- College of Basic Medical Science, Heilongjiang University of Chinese Medicine, Harbin, 150040, China
| | - Jiukuan Li
- Division of Avian Infectious Diseases, State Key Laboratory of Veterinary Biotechnology, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin, 150069, China.,Northeast Agricultural University, 150030, Harbin, China
| | - Jing Li
- State Forestry Administration Key Laboratory of Wildlife Conservation, College of Wildlife Resources, Northeast Forestry University, Harbin 150040, China
| | - Shuai Yao
- Division of Avian Infectious Diseases, State Key Laboratory of Veterinary Biotechnology, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin, 150069, China.,Northeast Agricultural University, 150030, Harbin, China
| | - Xiuqing Song
- Division of Avian Infectious Diseases, State Key Laboratory of Veterinary Biotechnology, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin, 150069, China
| | - Honglei Gao
- Division of Avian Infectious Diseases, State Key Laboratory of Veterinary Biotechnology, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin, 150069, China
| | - Yulong Gao
- Division of Avian Infectious Diseases, State Key Laboratory of Veterinary Biotechnology, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin, 150069, China
| | - Xiaole Qi
- Division of Avian Infectious Diseases, State Key Laboratory of Veterinary Biotechnology, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin, 150069, China
| | - Xiangwei Zeng
- State Forestry Administration Key Laboratory of Wildlife Conservation, College of Wildlife Resources, Northeast Forestry University, Harbin 150040, China
| | - Yongqiang Wang
- Division of Avian Infectious Diseases, State Key Laboratory of Veterinary Biotechnology, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin, 150069, China
| | - Xiaomei Wang
- Division of Avian Infectious Diseases, State Key Laboratory of Veterinary Biotechnology, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin, 150069, China
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Hu L, Ma LM, Zheng S, He X, Hammack TS, Brown EW, Zhang G. Development of a novel loop-mediated isothermal amplification (LAMP) assay for the detection of Salmonella ser. Enteritidis from egg products. Food Control 2018. [DOI: 10.1016/j.foodcont.2018.01.006] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Abstract
Loop-mediated isothermal amplification (LAMP) has become a powerful alternative to polymerase chain reaction (PCR) for pathogen detection in clinical specimens and food matrices. Nontyphoidal Salmonella is a zoonotic pathogen of significant food and feed safety concern worldwide. The first study employing LAMP for the rapid detection of Salmonella was reported in 2005, 5 years after the invention of the LAMP technology in Japan. This review provides an overview of international efforts in the past decade on the development and application of Salmonella LAMP assays in a wide array of food and feed matrices. Recent progress in assay design, platform development, commercial application, and method validation is reviewed. Future perspectives toward more practical and wider applications of Salmonella LAMP assays in food and feed testing are discussed.
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Affiliation(s)
- Qianru Yang
- Division of Animal and Food Microbiology, Office of Research, Center for Veterinary Medicine , U.S. Food and Drug Administration, Laurel, Maryland
| | - Kelly J Domesle
- Division of Animal and Food Microbiology, Office of Research, Center for Veterinary Medicine , U.S. Food and Drug Administration, Laurel, Maryland
| | - Beilei Ge
- Division of Animal and Food Microbiology, Office of Research, Center for Veterinary Medicine , U.S. Food and Drug Administration, Laurel, Maryland
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Azinheiro S, Carvalho J, Prado M, Garrido-Maestu A. Evaluation of Different Genetic Targets for Salmonella enterica Serovar Enteriditis and Typhimurium, Using Loop-Mediated Isothermal AMPlification for Detection in Food Samples. Front Sustain Food Syst 2018. [DOI: 10.3389/fsufs.2018.00005] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023] Open
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Garrido-Maestu A, Fuciños P, Azinheiro S, Carvalho J, Prado M. Systematic loop-mediated isothermal amplification assays for rapid detection and characterization of Salmonella spp., Enteritidis and Typhimurium in food samples. Food Control 2017. [DOI: 10.1016/j.foodcont.2017.05.011] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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Gong J, Zhuang L, Zhu C, Shi S, Zhang D, Zhang L, Yu Y, Dou X, Xu B, Wang C. Loop-Mediated Isothermal Amplification of the sefA Gene for Rapid Detection of Salmonella Enteritidis and Salmonella Gallinarum in Chickens. Foodborne Pathog Dis 2016; 13:177-81. [PMID: 26840841 DOI: 10.1089/fpd.2015.2082] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Salmonella spp. pose a threat to both human and animal health, with more than 2600 serovars having been reported to date. Salmonella serovars are usually identified by slide agglutination tests, which are labor intensive and time consuming. In an attempt to develop a more rapid screening method for the major poultry Salmonella serovars, we developed a loop-mediated isothermal amplification (LAMP) assay, which directly detected the sefA gene, a fimbrial operon gene existing in several specific serovars of Salmonella enterica including the major poultry serovars, namely Salmonella enterica serovar Enteritidis (Salmonella Enteritidis) and Salmonella enterica serovar Gallinarum (Salmonella Gallinarum). With the 177 bacterial strains we tested, positive reactions were only observed with 85 strains of serovar Salmonella Enteritidis and Salmonella Gallinarum. The detection limit of the LAMP assay was 4 CFU/reaction with genomic DNAs of Salmonella Enteritidis (ATCC 13076) from pure culture and 400 CFU/ reaction with DNA extracted from spiked chicken feces. The LAMP assay was more sensitive than conventional culture, especially without enrichment, in detecting Salmonella Enteritidis (CMCC 50041) in the spiked fecal samples. The results show the sefA LAMP method is a rapid, sensitive, specific, and practical method for directly detection of Salmonella Enteritidis and Salmonella Gallinarum in chickens. The sefA LAMP assay can potentially serve as new on-site diagnostics in the poultry industry.
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Affiliation(s)
- Jiansen Gong
- 1 Poultry Institute , Chinese Academy of Agricultural Sciences, Yangzhou, Jiangsu, China .,2 Jiangsu Co-innovation Center for Prevention and Control of Important Animal Infectious Diseases and Zoonoses , Yangzhou, Jiangsu, China
| | - Linlin Zhuang
- 3 Yangzhou University College of Veterinary Medicine , Yangzhou, Jiangsu, China
| | - Chunhong Zhu
- 1 Poultry Institute , Chinese Academy of Agricultural Sciences, Yangzhou, Jiangsu, China
| | - Shourong Shi
- 1 Poultry Institute , Chinese Academy of Agricultural Sciences, Yangzhou, Jiangsu, China .,2 Jiangsu Co-innovation Center for Prevention and Control of Important Animal Infectious Diseases and Zoonoses , Yangzhou, Jiangsu, China
| | - Di Zhang
- 1 Poultry Institute , Chinese Academy of Agricultural Sciences, Yangzhou, Jiangsu, China
| | - Linji Zhang
- 4 Xuzhou Vocational College of Bioengineering , Xuzhou, Jiangsu, China
| | - Yan Yu
- 1 Poultry Institute , Chinese Academy of Agricultural Sciences, Yangzhou, Jiangsu, China
| | - Xinhong Dou
- 1 Poultry Institute , Chinese Academy of Agricultural Sciences, Yangzhou, Jiangsu, China .,2 Jiangsu Co-innovation Center for Prevention and Control of Important Animal Infectious Diseases and Zoonoses , Yangzhou, Jiangsu, China
| | - Bu Xu
- 1 Poultry Institute , Chinese Academy of Agricultural Sciences, Yangzhou, Jiangsu, China
| | - Chengming Wang
- 2 Jiangsu Co-innovation Center for Prevention and Control of Important Animal Infectious Diseases and Zoonoses , Yangzhou, Jiangsu, China .,3 Yangzhou University College of Veterinary Medicine , Yangzhou, Jiangsu, China
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Tang T, Gao Q, Barrow P, Wang M, Cheng A, Jia R, Zhu D, Chen S, Liu M, Sun K, Yang Q, Chen X. Development and evaluation of live attenuated Salmonella vaccines in newly hatched duckings. Vaccine 2015; 33:5564-5571. [DOI: 10.1016/j.vaccine.2015.09.004] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2015] [Revised: 08/28/2015] [Accepted: 09/04/2015] [Indexed: 10/23/2022]
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Zhuang L, Gong J, Li Q, Zhu C, Yu Y, Dou X, Liu X, Xu B, Wang C. Detection of Salmonella spp. by a loop-mediated isothermal amplification (LAMP) method targeting bcfD gene. Lett Appl Microbiol 2014; 59:658-64. [PMID: 25199410 DOI: 10.1111/lam.12328] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2014] [Revised: 08/29/2014] [Accepted: 09/04/2014] [Indexed: 11/28/2022]
Abstract
UNLABELLED In this study, we developed and validated a loop-mediated isothermal amplification (LAMP) assay for Salmonella detection targeting bcfD gene, a conserved fimbrial operon gene existing in Salmonella. The Salmonella LAMP assay we developed successfully amplified 44 Salmonella strains (14 standard strains and 30 clinical isolates), but none of 9 non-Salmonella standard strains (Proteus mirabilis, Listeria monocytogenes, Escherichia coli, Pseudomonas aeruginosa, Shigella flexneri, Shigella sonnei, Klebsiella pneumoniae, Campylobacter jejuni and Vibrio parahemolyticus). The detection limit was 5 CFU of Salmonella pure culture or 200 CFU of artificially spiked faeces per reaction system (equivalent to 5000 CFU g(-1) of faeces), and this method could directly detect Salmonella in chicken faeces free of pre-enrichment in a reaction time of 25 min. Our experiments show that the LAMP method we developed is a rapid, sensitive, specific and practical method for Salmonella detection. The Salmonella LAMP assay can potentially serve as new on-site diagnostics in the food and agricultural industries. SIGNIFICANCE AND IMPACT OF THE STUDY A loop-mediated isothermal amplification (LAMP) assay was established to detect Salmonella targeting bcfD gene, a conserved fimbrial operon gene. The detection limit was 5 CFU of Salmonella pure culture or 200 CFU of artificially spiked faeces per reaction system (equivalent to 5000 CFU g(-1) of faeces), and this method could directly detect Salmonella in chicken faeces free of pre-enrichment in a reaction time of 25 min. The Salmonella LAMP assay is a rapid, sensitive, specific and practical method for Salmonella detection and can potentially serve as new on-site diagnostics in the food and agricultural industries.
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Affiliation(s)
- L Zhuang
- Yangzhou University College of Veterinary Medicine, Yangzhou, Jiangsu, China; Jiangsu Co-innovation Center for Prevention and Control of Important Animal Infectious Diseases and Zoonoses, Yangzhou, Jiangsu, China
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Kokkinos PA, Ziros PG, Bellou M, Vantarakis A. Loop-Mediated Isothermal Amplification (LAMP) for the Detection of Salmonella in Food. FOOD ANAL METHOD 2014; 7:512-26. [DOI: 10.1007/s12161-013-9748-8] [Citation(s) in RCA: 41] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
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Cho AR, Dong HJ, Cho S. Rapid and Sensitive Detection of Salmonella spp. by Using a Loop-Mediated Isothermal Amplification Assay in Duck Carcass Sample. Korean J Food Sci Anim Resour 2013. [DOI: 10.5851/kosfa.2013.33.5.655] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022] Open
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