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He S, Deng H, Li P, Tian Q, Yang Y, Hu J, Li H, Zhao T, Ling H, Liu Y, Liu S, Guo Q. Bimodal DNA self-origami material with nucleic acid function enhancement. J Nanobiotechnology 2024; 22:39. [PMID: 38279115 PMCID: PMC10821560 DOI: 10.1186/s12951-024-02296-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2023] [Accepted: 01/02/2024] [Indexed: 01/28/2024] Open
Abstract
BACKGROUND The design of DNA materials with specific nanostructures for biomedical tissue engineering applications remains a challenge. High-dimensional DNA nanomaterials are difficult to prepare and are unstable; moreover, their synthesis relies on heavy metal ions. Herein, we developed a bimodal DNA self-origami material with good biocompatibility and differing functions using a simple synthesis method. We simulated and characterized this material using a combination of oxDNA, freeze-fracture electron microscopy, and atomic force microscopy. Subsequently, we optimized the synthesis procedure to fix the morphology of this material. RESULTS Using molecular dynamics simulation, we found that the bimodal DNA self-origami material exhibited properties of spontaneous stretching and curling and could be fixed in a single morphology via synthesis control. The application of different functional nucleic acids enabled the achievement of various biological functions, and the performance of functional nucleic acids was significantly enhanced in the material. Consequently, leveraging the various functional nucleic acids enhanced by this material will facilitate the attainment of diverse biological functions. CONCLUSION The developed design can comprehensively reveal the morphology and dynamics of DNA materials. We thus report a novel strategy for the construction of high-dimensional DNA materials and the application of functional nucleic acid-enhancing materials.
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Affiliation(s)
- Songlin He
- Institute of Orthopedics, First Medical Center, Chinese PLA General Hospital; Beijing Key Laboratory of Regenerative Medicine in Orthopedics; Key Laboratory of Musculoskeletal Trauma and War Injuries PLA, 28 Fuxing Road, Haidian District, Beijing, 100853, China
- School of Medicine, Nankai University, Tianjin, 300071, China
| | - Haotian Deng
- Institute of Orthopedics, First Medical Center, Chinese PLA General Hospital; Beijing Key Laboratory of Regenerative Medicine in Orthopedics; Key Laboratory of Musculoskeletal Trauma and War Injuries PLA, 28 Fuxing Road, Haidian District, Beijing, 100853, China
- School of Medicine, Nankai University, Tianjin, 300071, China
| | - Peiqi Li
- Institute of Orthopedics, First Medical Center, Chinese PLA General Hospital; Beijing Key Laboratory of Regenerative Medicine in Orthopedics; Key Laboratory of Musculoskeletal Trauma and War Injuries PLA, 28 Fuxing Road, Haidian District, Beijing, 100853, China
- School of Medicine, Nankai University, Tianjin, 300071, China
| | - Qinyu Tian
- Institute of Orthopedics, First Medical Center, Chinese PLA General Hospital; Beijing Key Laboratory of Regenerative Medicine in Orthopedics; Key Laboratory of Musculoskeletal Trauma and War Injuries PLA, 28 Fuxing Road, Haidian District, Beijing, 100853, China
| | - Yongkang Yang
- Institute of Orthopedics, First Medical Center, Chinese PLA General Hospital; Beijing Key Laboratory of Regenerative Medicine in Orthopedics; Key Laboratory of Musculoskeletal Trauma and War Injuries PLA, 28 Fuxing Road, Haidian District, Beijing, 100853, China
- School of Medicine, Nankai University, Tianjin, 300071, China
| | - Jingjing Hu
- Institute of Orthopedics, First Medical Center, Chinese PLA General Hospital; Beijing Key Laboratory of Regenerative Medicine in Orthopedics; Key Laboratory of Musculoskeletal Trauma and War Injuries PLA, 28 Fuxing Road, Haidian District, Beijing, 100853, China
- Department of Gastroenterology, the Second Medical Center and National Clinical Research Center of Geriatric Diseases, 28 Fuxing Road, Haidian District, Beijing, 100853, China
| | - Hao Li
- Institute of Orthopedics, First Medical Center, Chinese PLA General Hospital; Beijing Key Laboratory of Regenerative Medicine in Orthopedics; Key Laboratory of Musculoskeletal Trauma and War Injuries PLA, 28 Fuxing Road, Haidian District, Beijing, 100853, China
- School of Medicine, Nankai University, Tianjin, 300071, China
| | - Tianyuan Zhao
- Institute of Orthopedics, First Medical Center, Chinese PLA General Hospital; Beijing Key Laboratory of Regenerative Medicine in Orthopedics; Key Laboratory of Musculoskeletal Trauma and War Injuries PLA, 28 Fuxing Road, Haidian District, Beijing, 100853, China
| | - Hongkun Ling
- School of Medicine, Nankai University, Tianjin, 300071, China
| | - Yin Liu
- School of Medicine, Nankai University, Tianjin, 300071, China.
- Nankai University Eye Institute, Nankai University, Tianjin, 300071, China.
| | - Shuyun Liu
- Institute of Orthopedics, First Medical Center, Chinese PLA General Hospital; Beijing Key Laboratory of Regenerative Medicine in Orthopedics; Key Laboratory of Musculoskeletal Trauma and War Injuries PLA, 28 Fuxing Road, Haidian District, Beijing, 100853, China.
- School of Medicine, Nankai University, Tianjin, 300071, China.
| | - Quanyi Guo
- Institute of Orthopedics, First Medical Center, Chinese PLA General Hospital; Beijing Key Laboratory of Regenerative Medicine in Orthopedics; Key Laboratory of Musculoskeletal Trauma and War Injuries PLA, 28 Fuxing Road, Haidian District, Beijing, 100853, China.
- School of Medicine, Nankai University, Tianjin, 300071, China.
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