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Gran-Scheuch A, Wijma HJ, Capra N, van Beek HL, Trajkovic M, Baldenius K, Breuer M, Thunnissen AMWH, Janssen DB. Bioinformatics and Computationally Supported Redesign of Aspartase for β-Alanine Synthesis by Acrylic Acid Hydroamination. ACS Catal 2025; 15:928-938. [PMID: 39839848 PMCID: PMC11744663 DOI: 10.1021/acscatal.4c05525] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2024] [Revised: 12/03/2024] [Accepted: 12/11/2024] [Indexed: 01/23/2025]
Abstract
Aspartate ammonia lyases catalyze the reversible amination of fumarate to l-aspartate. Recent studies demonstrate that the thermostable enzyme from Bacillus sp. YM55-1 (AspB) can be engineered for the enantioselective production of substituted β-amino acids. This reaction would be attractive for the conversion of acrylic acid to β-alanine, which is an important building block for the preparation of bioactive compounds. Here we describe a bioinformatics and computational approach aimed at introducing the β-alanine synthesis activity. Three strategies were used: First, we redesigned the α-carboxylate binding pocket of AspB to introduce activity with the acrylic acid. Next, different template enzymes were identified by genome mining, equipped with a redesigned α-carboxylate pocket, and investigated for β-alanine synthesis, which yielded variants with better activity. Third, interactions of the SS-loop that covers the active site and harbors a catalytic serine were computationally redesigned using energy calculations to stabilize reactive conformations and thereby further increase the desired β-alanine synthesis activity. Different improved enzymes were obtained and the best variants showed k cat values with acrylic acid of at least 0.6-1.5 s-1 with K M values in the high mM range. Since the β-alanine production of wild-type enzyme was below the detection limit, this suggests that the k cat/K m was improved by at least 1000-fold. Crystal structures of the 6-fold mutant of redesigned AspB and the similarly engineered aspartase from Caenibacillus caldisaponilyticus revealed that their ligand-free structures have the SS-loop in a closed (reactive) conformation, which for wild-type AspB is only observed in the substrate-bound enzyme. AlphaFold-generated models suggest that other aspartase variants redesigned for acrylic acid hydroamination also prefer a 3D structure with the loop in a closed conformation. The combination of binding pocket redesign, genome mining, and enhanced active-site loop closure thus created effective β-alanine synthesizing variants of aspartase.
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Affiliation(s)
- Alejandro Gran-Scheuch
- Chemical
Biotechnology, Groningen Biomolecular Sciences and Biotechnology Institute
(GBB), University of Groningen, 9747 AG Groningen, the Netherlands
| | - Hein J. Wijma
- Chemical
Biotechnology, Groningen Biomolecular Sciences and Biotechnology Institute
(GBB), University of Groningen, 9747 AG Groningen, the Netherlands
| | - Nikolas Capra
- Chemical
Biotechnology, Groningen Biomolecular Sciences and Biotechnology Institute
(GBB), University of Groningen, 9747 AG Groningen, the Netherlands
| | - Hugo L. van Beek
- Chemical
Biotechnology, Groningen Biomolecular Sciences and Biotechnology Institute
(GBB), University of Groningen, 9747 AG Groningen, the Netherlands
| | - Milos Trajkovic
- Molecular
Enzymology Group, Groningen Biomolecular Sciences and Biotechnology
Institute (GBB), University of Groningen, 9747 AG Groningen, the Netherlands
| | - Kai Baldenius
- Baldenius
Biotech Consulting, www.baldenius-biotech.com, 68159 Mannheim, Germany
| | | | - Andy-Mark W. H. Thunnissen
- Chemical
Biotechnology, Groningen Biomolecular Sciences and Biotechnology Institute
(GBB), University of Groningen, 9747 AG Groningen, the Netherlands
| | - Dick B. Janssen
- Chemical
Biotechnology, Groningen Biomolecular Sciences and Biotechnology Institute
(GBB), University of Groningen, 9747 AG Groningen, the Netherlands
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Cimadevilla-Fernández-Pola E, Martínez-Roldán C, Maté-Muñoz JL, Guodemar-Pérez J, Sánchez-Calabuig MA, García-Fernández P, Hervás-Pérez JP, Hernández-Lougedo J. Effects of β-Alanine Supplementation on Subjects Performing High-Intensity Functional Training. Nutrients 2024; 16:2340. [PMID: 39064783 PMCID: PMC11280034 DOI: 10.3390/nu16142340] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2024] [Revised: 07/16/2024] [Accepted: 07/17/2024] [Indexed: 07/28/2024] Open
Abstract
BACKGROUND β-alanine, a non-essential amino acid found in the diet and produced through nucleotide catabolism, is significant for muscle performance due to its role in carnosine synthesis. This study aims to assess the impact of a 4-week β-alanine supplementation on neuromuscular fatigue in individuals engaging in High-Intensity Functional Training (HIFT) and its subsequent effect on sports performance, distinguishing between central fatigue from the CNS and peripheral fatigue from the muscular system. MATERIALS AND METHODS This study (a randomized controlled trial) comprised a total of 27 subjects, who were divided into two groups. Group A (the control group) was administered sucrose powder, while Group B (the experimental group) was given β-alanine powder. The subjects were randomly assigned to either the experimental or control groups. This study lasted four weeks, during which both groups participated in high-intensity interval training (HIFT) on the first day to induce fatigue and work close to their VO2 max. RESULTS Statistically significant changes were in the sports performance variables, specifically vertical jump and jumping power (p = 0.027). These changes were observed only in the group that had been supplemented with β-alanine. Nevertheless, no alterations were observed in any other variables, including fatigue, metabolic intensity of exercise, or perceived intensity (p > 0.05). CONCLUSIONS A four-week β-alanine intake program demonstrated an improvement in the capacity of subjects, as evidenced by enhanced vertical jump and power performance. Nevertheless, it does result in discernible alterations in performance.
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Affiliation(s)
- Eduardo Cimadevilla-Fernández-Pola
- Physiotherapy and Health Research Group (FYSA), Faculty of Health Sciences-HM Hospitals, University Camilo José Cela, Urb. Villafranca del Castillo, 49. Villanueva de la Cañada, 28692 Madrid, Spain; (E.C.-F.-P.); (C.M.-R.); (J.G.-P.); (M.A.S.-C.); (J.H.-L.)
- Instituto de Investigación Sanitaria HM Hospitales, 28692 Madrid, Spain
| | - Cristina Martínez-Roldán
- Physiotherapy and Health Research Group (FYSA), Faculty of Health Sciences-HM Hospitals, University Camilo José Cela, Urb. Villafranca del Castillo, 49. Villanueva de la Cañada, 28692 Madrid, Spain; (E.C.-F.-P.); (C.M.-R.); (J.G.-P.); (M.A.S.-C.); (J.H.-L.)
- Instituto de Investigación Sanitaria HM Hospitales, 28692 Madrid, Spain
| | - Jose Luis Maté-Muñoz
- Faculty of Nursing, Physiotherapy and Podiatry, Complutense University of Madrid, 28040 Madrid, Spain; (J.L.M.-M.); (P.G.-F.)
| | - Jesús Guodemar-Pérez
- Physiotherapy and Health Research Group (FYSA), Faculty of Health Sciences-HM Hospitals, University Camilo José Cela, Urb. Villafranca del Castillo, 49. Villanueva de la Cañada, 28692 Madrid, Spain; (E.C.-F.-P.); (C.M.-R.); (J.G.-P.); (M.A.S.-C.); (J.H.-L.)
- Instituto de Investigación Sanitaria HM Hospitales, 28692 Madrid, Spain
| | - Maria Aránzazu Sánchez-Calabuig
- Physiotherapy and Health Research Group (FYSA), Faculty of Health Sciences-HM Hospitals, University Camilo José Cela, Urb. Villafranca del Castillo, 49. Villanueva de la Cañada, 28692 Madrid, Spain; (E.C.-F.-P.); (C.M.-R.); (J.G.-P.); (M.A.S.-C.); (J.H.-L.)
- Instituto de Investigación Sanitaria HM Hospitales, 28692 Madrid, Spain
| | - Pablo García-Fernández
- Faculty of Nursing, Physiotherapy and Podiatry, Complutense University of Madrid, 28040 Madrid, Spain; (J.L.M.-M.); (P.G.-F.)
| | - Juan Pablo Hervás-Pérez
- Physiotherapy and Health Research Group (FYSA), Faculty of Health Sciences-HM Hospitals, University Camilo José Cela, Urb. Villafranca del Castillo, 49. Villanueva de la Cañada, 28692 Madrid, Spain; (E.C.-F.-P.); (C.M.-R.); (J.G.-P.); (M.A.S.-C.); (J.H.-L.)
- Instituto de Investigación Sanitaria HM Hospitales, 28692 Madrid, Spain
| | - Juan Hernández-Lougedo
- Physiotherapy and Health Research Group (FYSA), Faculty of Health Sciences-HM Hospitals, University Camilo José Cela, Urb. Villafranca del Castillo, 49. Villanueva de la Cañada, 28692 Madrid, Spain; (E.C.-F.-P.); (C.M.-R.); (J.G.-P.); (M.A.S.-C.); (J.H.-L.)
- Instituto de Investigación Sanitaria HM Hospitales, 28692 Madrid, Spain
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Zhang Y, Zhang G, Zhang H, Tian Y, Li J, Yun J, Zabed HM, Qi X. Efficient Fermentative Production of β-Alanine from Glucose through Multidimensional Engineering of Escherichia coli. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2024; 72:14274-14283. [PMID: 38867465 DOI: 10.1021/acs.jafc.4c03492] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2024]
Abstract
β-Alanine, a valuable β-type amino acid, is experiencing increased demand due to its multifaceted applications in food flavoring, nutritional supplements, pharmaceuticals, and the chemical industry. Nevertheless, the sustainable biosynthesis of β-alanine currently faces challenges due to the scarcity of robust strains, attributed to the complexities of modulating multiple genes and the inherent physiological constraints. Here, systems metabolic engineering was implemented in Escherichia coli to overcome these limitations. First, an efficient l-aspartate-α-decarboxylase (ADC) was recruited for β-alanine biosynthesis. To conserve phosphoenolpyruvate flux, we subsequently modified the endogenous glucose assimilation system by inactivating the phosphotransferase system (PTS) and introducing an alternative non-PTS system, which increased β-alanine production to 1.70 g/L. The supply of key precursors, oxaloacetate and l-aspartate, was synergistically improved through comprehensive modulation, including strengthening main flux and blocking bypass metabolism, which significantly increased the β-alanine titer to 3.43 g/L. Next, the expression of ADC was optimized by promoter and untranslated region (UTR) engineering. Further transport engineering, which involved disrupting β-alanine importer CycA and heterologously expressing β-alanine exporter NCgI0580, improved β-alanine production to 8.48 g/L. Additionally, corn steep liquor was used to develop a cost-effective medium. The final strain produced 74.03 g/L β-alanine with a yield of 0.57 mol/mol glucose during fed-batch fermentation.
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Affiliation(s)
- Yufei Zhang
- School of Life Sciences, Guangzhou University, 230 Wai Huan Xi Road, Guangzhou 510006, Guangdong, P. R. China
- School of Food and Biological Engineering, Jiangsu University, 301 Xuefu Road, Zhenjiang 212013, Jiangsu, P. R. China
| | - Guoyan Zhang
- School of Life Sciences, Guangzhou University, 230 Wai Huan Xi Road, Guangzhou 510006, Guangdong, P. R. China
- School of Food and Biological Engineering, Jiangsu University, 301 Xuefu Road, Zhenjiang 212013, Jiangsu, P. R. China
| | - Huifang Zhang
- School of Food and Biological Engineering, Jiangsu University, 301 Xuefu Road, Zhenjiang 212013, Jiangsu, P. R. China
| | - Yuehui Tian
- School of Life Sciences, Guangzhou University, 230 Wai Huan Xi Road, Guangzhou 510006, Guangdong, P. R. China
| | - Jia Li
- School of Life Sciences, Guangzhou University, 230 Wai Huan Xi Road, Guangzhou 510006, Guangdong, P. R. China
| | - Junhua Yun
- School of Life Sciences, Guangzhou University, 230 Wai Huan Xi Road, Guangzhou 510006, Guangdong, P. R. China
| | - Hossain M Zabed
- School of Life Sciences, Guangzhou University, 230 Wai Huan Xi Road, Guangzhou 510006, Guangdong, P. R. China
| | - Xianghui Qi
- School of Life Sciences, Guangzhou University, 230 Wai Huan Xi Road, Guangzhou 510006, Guangdong, P. R. China
- School of Food and Biological Engineering, Jiangsu University, 301 Xuefu Road, Zhenjiang 212013, Jiangsu, P. R. China
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Peng Y, Ma L, Xu P, Tao F. High-Performance Production of N-Acetyl-d-Neuraminic Acid with Whole Cells of Fast-Growing Vibrio natriegens via a Thermal Strategy. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2023; 71:20198-20209. [PMID: 38051209 DOI: 10.1021/acs.jafc.3c07259] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/07/2023]
Abstract
High performance is the core objective that biotechnologists pursue, of which low efficiency, low titer, and side products are the chief obstacles. Here, a thermal strategy is proposed for simultaneously addressing the obstacles of whole-cell catalysis that is widely applied in the food industry. The strategy, by combining fast-growing Vibrio natriegens, thermophilic enzymes, and high-temperature whole-cell catalysis, was successfully applied for the high-performance production of N-acetyl-d-neuraminic acid (Neu5Ac) that plays essential roles in the fields of food (infant formulas), healthcare, and medicine. By using this strategy, we realized the highest Neu5Ac titer and productivity of 126.1 g/L and up to 71.6 g/(L h), respectively, 7.2-fold higher than the productivity of Escherichia coli. The major byproduct acetic acid was also eliminated via quenching complex metabolic side reactions enabled by temperature elevation. This study offers a broadly applicable strategy for producing chemicals relevant to the food industry, providing insights for its future development.
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Affiliation(s)
- Yuan Peng
- State Key Laboratory of Microbial Metabolism, Joint International Research Laboratory of Metabolic and Developmental Sciences, and School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, People's Republic of China
| | - Lina Ma
- State Key Laboratory of Microbial Metabolism, Joint International Research Laboratory of Metabolic and Developmental Sciences, and School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, People's Republic of China
| | - Ping Xu
- State Key Laboratory of Microbial Metabolism, Joint International Research Laboratory of Metabolic and Developmental Sciences, and School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, People's Republic of China
| | - Fei Tao
- State Key Laboratory of Microbial Metabolism, Joint International Research Laboratory of Metabolic and Developmental Sciences, and School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, People's Republic of China
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