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Abbasnia H, Mohammadian T, Khademerfan M, Bahrami F, Paknejadi M. Molecular detection and phylogenetic analysis of microsporidia in stool specimens isolated from multiple sclerosis patients in the west of Iran. INFECTION, GENETICS AND EVOLUTION : JOURNAL OF MOLECULAR EPIDEMIOLOGY AND EVOLUTIONARY GENETICS IN INFECTIOUS DISEASES 2025; 128:105720. [PMID: 39914558 DOI: 10.1016/j.meegid.2025.105720] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/09/2024] [Revised: 01/24/2025] [Accepted: 01/27/2025] [Indexed: 02/10/2025]
Abstract
BACKGROUND Intestinal microsporidiosis is an emerging opportunistic infection that primarily affects individuals with compromised immune systems. This study investigated intestinal microsporidia infections in individuals diagnosed with multiple sclerosis (MS) and elucidated the genetic diversity and evolutionary relationships of microsporidia. METHODS A total of 116 stool samples were collected from individuals diagnosed with MS, including 54 men and 63 women, during 2022-2023 in Kurdistan Province, western Iran. The mean age of the participants was 38.28 ± 7.8 years. RNA extraction was performed, followed by amplification of the small subunit ribosomal RNA (SSU rRNA) to identify and characterize microsporidia and their associated genetic markers. A phylogenetic tree was constructed using MEGA X software to explore the evolutionary relationships among the isolates. RESULTS PCR revealed Enterocytozoon bieneusi in 5 of 116 samples (4.3 %), whereas no positive cases of Encephalitozoon species were detected. Additionally, no statistically significant associations were observed between the presence of microsporidia and variables such as age, sex, or geographic region. CONCLUSION This study highlights the clinical significance of Enterocytozoon bieneusi in immunocompromised populations, particularly in patients with multiple sclerosis (MS). The findings underscore the potential role of zoonotic transmission and highlight the urgent need for enhanced diagnostic capabilities and preventive strategies to combat intestinal microsporidiosis in vulnerable groups, particularly in regions such as western Iran.
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Affiliation(s)
- Hadi Abbasnia
- Department of Microbiology, Shahr-e-Qods Branch, Islamic Azad University, Tehran, Iran
| | - Taher Mohammadian
- Department of Microbiology, Shahr-e-Qods Branch, Islamic Azad University, Tehran, Iran.
| | - Mohammadbagher Khademerfan
- Zoonoses Research Center, Research Institute for Health Development, Kurdistan University of Medical Sciences, Sanandaj, Iran; Cellular and Molecular Research Center, Research Institute for Health Development, Kurdistan University of Medical Sciences, Sanandaj, Iran; Department of Parasitology and Mycology, Faculty of Medicine, Kurdistan University of Medical Sciences, Sanandaj, Iran.
| | - Fares Bahrami
- Zoonoses Research Center, Research Institute for Health Development, Kurdistan University of Medical Sciences, Sanandaj, Iran; Cellular and Molecular Research Center, Research Institute for Health Development, Kurdistan University of Medical Sciences, Sanandaj, Iran
| | - Mansoureh Paknejadi
- Department of Microbiology, Shahr-e-Qods Branch, Islamic Azad University, Tehran, Iran
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Garrouste C, Poirier P, Uro-Coste C, Iriart X, Kamar N, Bonhomme J, Calvar E, Le Gal S, Lanfranco L, Autier B, Rakoff L, Durieux MF, Danthu C, Morio F, Deltombe C, Moreno-Sabater A, Ouali N, Costa D, Bertrand D, Chesnay A, Gatault P, Rabodonirina M, Morelon E, Dumortier J, Sitterlé E, Scemla A, Hamane S, Cachera L, Damiani C, Poulain C, L’Ollivier C, Moal V, Delhaes L, Kaminski H, Cateau E, Ecotière L, Brunet J, Caillard S, Valot S, Tinel C, Argy N, Raimbourg Q, Robert MG, Noble J, Boignard A, Botterel F, Matignon M, Bellanger AP, Crépin T, Leroy J, Lionet A, Debourgogne A, Nicolas M, Claudéon J, Moniot M, Lambert C, Nourrisson C. Fumagillin Shortage: How to Treat Enterocytozoon bieneusi Microsporidiosis in Solid Organ Transplant Recipients in 2024? Transpl Int 2024; 37:13518. [PMID: 39726674 PMCID: PMC11670256 DOI: 10.3389/ti.2024.13518] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2024] [Accepted: 11/27/2024] [Indexed: 12/28/2024]
Abstract
Intestinal microsporidiosis caused by Enterocytozoon bieneusi is an opportunistic infection that especially affects solid organ transplant (SOT) recipients. Management revolves around tapering the immunosuppressive regimen and/or using a specific anti-microsporidia treatment, but only fumagillin has demonstrated efficacy for treatment of this infection. Since fumagillin has been commercially discontinued, nitazoxanide is increasingly being used in this indication. We aimed to describe therapeutic management of E. bieneusi infections in this context. We conducted a French nationwide observational retrospective study on reported cases of E. bieneusi infections in SOT recipients. We identified 154 cases: 64 (41.6%) were managed by simply modifying the immunosuppressive regimen, 54 (35.1%) were given fumagillin, and 36 (23.4%) were given nitazoxanide. Clinical remission rate ranged from 77.8% to 90.7% and was not significantly different between therapeutic strategies but tended to be lower with nitazoxanide. Stool negativization rate was highest with fumagillin (91.7%) and lowest with nitazoxanide (28.6%). Relapses occurred in 6.9% of cases and were more frequent with nitazoxanide (14.3%). This study shows that tapering immunosuppression can result in a satisfactory remission rate but is sometimes accompanied by relapses. Nitazoxanide had limited effectiveness, whereas fumagillin had good results that provide a solid rationale for bringing fumagillin back to market. Trial Registration Number ClinicalTrials.gov ID: NCT05417815.
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Affiliation(s)
- Cyril Garrouste
- Service de Néphrologie, CHU Clermont-Ferrand, Clermont-Ferrand, France
| | - Philippe Poirier
- Service de Parasitologie-Mycologie, 3IHP, Inserm U1071, M2iSH, USC-INRAE 1382, Université Clermont Auvergne, CHU Clermont-Ferrand, Clermont-Ferrand, France
- Centre National de Référence des Cryptosporidioses, Microsporidies et Autres Protozooses Digestives, Laboratoire Associé de Clermont-Ferrand, Clermont-Ferrand, France
| | | | - Xavier Iriart
- Service de Parasitologie-Mycologie, Institut Toulousain des Maladies Infectieuses et Inflammatoires (Infinity), CNRS UMR5051, INSERM UMR1291, Université Toulouse III Paul Sabatier, CHU Toulouse, Toulouse, France
| | - Nassim Kamar
- Service de Néphrologie, CHU Toulouse, Toulouse, France
| | - Julie Bonhomme
- Service de Parasitologie-Mycologie, ToxEMAC-ABTE, Université de Normandie Unicaen, CHU Caen, Caen, France
| | - Eve Calvar
- Service de Néphrologie, CHU Caen, Caen, France
| | - Solène Le Gal
- Service de Parasitologie-Mycologie, CHU Brest, Brest, France
| | | | - Brice Autier
- Service de Parasitologie-Mycologie, CHU Rennes, Rennes, France
| | | | | | | | - Florent Morio
- Cibles et Médicaments des Infections et de l’Immunité, Nantes Université, CHU Nantes, Nantes, France
| | | | - Alicia Moreno-Sabater
- Service de Parasitologie-Mycologie, Centre d’Immunologie et de Maladies Infectieuses (Cimi-Paris), Inserm U1135, Sorbonne Université, AP-HP, Hôpital Saint-Antoine, Paris, France
| | - Nacera Ouali
- Service de Néphrologie, Assistance Publique-Hôpitaux de Paris, Hôpital Saint-Antoine, Paris, France
| | - Damien Costa
- Parasitology-Mycology laboratory, EA 7510 ESCAPE Epidemiosurveillance and Circulation of Parasites in the Environment, University of Rouen Normandie, University Hospital of Rouen, National Reference Center (NRC) for cryptosporidiosis, microsporidia and other digestive protozoa, Rouen, France
| | | | | | | | - Meja Rabodonirina
- Service de Parasitologie-Mycologie, Hospices Civils de Lyon, Lyon, France
| | | | - Jérôme Dumortier
- Service d’Hépato-Gastroentérologie, Hospices Civils de Lyon, Hôpital Edouard Herriot, Université Claude Bernard Lyon 1, Lyon, France
| | - Emilie Sitterlé
- Service de Parasitologie-Mycologie, Assistance Publique-Hôpitaux de Paris, Hôpital Necker, Paris, France
| | - Anne Scemla
- Service de Néphrologie, Assistance Publique-Hôpitaux de Paris, Hôpital Necker, Paris, France
| | - Samia Hamane
- Service de Parasitologie-Mycologie, Assistance Publique-Hôpitaux de Paris, Hôpital Saint-Louis, Paris, France
| | - Laurène Cachera
- Service de Néphrologie, Assistance Publique-Hôpitaux de Paris, Hôpital Saint-Louis, Paris, France
| | - Céline Damiani
- Service de Parasitologie et Mycologie Médicales et Agents Infectieux, Résistance et Chimiothérapie (AGIR), UR 4294, CHU Amiens-Picardie, Université de Picardie Jules Verne, Amiens, France
| | | | - Coralie L’Ollivier
- Service de Parasitologie-Mycologie, Assistance Publique-Hôpitaux de Marseille, IHU Méditerranée Infection, Marseille, France
| | - Valérie Moal
- Service de Néphrologie, Assistance Publique-Hôpitaux de Marseille, Paris, France
| | - Laurence Delhaes
- Service de Parasitologie-Mycologie, CHU Bordeaux, Bordeaux, France
| | - Hannah Kaminski
- Service de Néphrologie-Transplantation-Dialyse-Aphéréses, CHU Bordeaux, Bordeaux, France
| | - Estelle Cateau
- Service de Parasitologie-Mycologie, CHU Poitiers, Poitiers, France
| | | | - Julie Brunet
- Service de Parasitologie-Mycologie, CHU Strasbourg, Strasbourg, France
| | | | - Stéphane Valot
- Service de Parasitologie-Mycologie, CHU Dijon, Dijon, France
| | - Claire Tinel
- Service de Néphrologie, CHU Dijon, Dijon, France
| | - Nicolas Argy
- Service de Parasitologie-Mycologie, Assistance Publique-Hôpitaux de Paris, Hôpital Bichat, Paris, France
| | - Quentin Raimbourg
- Service de Néphrologie, Assistance Publique-Hôpitaux de Paris, Hôpital Bichat, Paris, France
| | - Marie Gladys Robert
- Service de Parasitologie-Mycologie, Université Grenoble Alpes, CHU Grenoble Alpes, Grenoble, France
| | - Johan Noble
- Service de Néphrologie, CHU Grenoble, Grenoble, France
| | - Aude Boignard
- Service de Cardiologie, CHU Grenoble, Grenoble, France
| | - Françoise Botterel
- Service de Parasitologie-Mycologie, Assistance Publique-Hôpitaux de Paris, Hôpital Henri Mondor, Paris, France
| | - Marie Matignon
- Service de Néphrologie, Assistance Publique-Hôpitaux de Paris, Hôpital Henri Mondor, Paris, France
| | | | - Thomas Crépin
- Service de Néphrologie, CHU Besançon, Besançon, France
| | - Jordan Leroy
- Service de Parasitologie-Mycologie, CHU Lille, Lille, France
| | - Arnaud Lionet
- Service de Néphrologie, CHU Lille, Hôpital Huriez, Lille, France
| | | | - Muriel Nicolas
- Service de Parasitologie-Mycologie, CHU Pointe-à-Pitre, Guadeloupe, France
| | - Joëlle Claudéon
- Service de Néphrologie, CHU Pointe-à-Pitre, Guadeloupe, France
| | - Maxime Moniot
- Service de Parasitologie-Mycologie, 3IHP, Inserm U1071, M2iSH, USC-INRAE 1382, Université Clermont Auvergne, CHU Clermont-Ferrand, Clermont-Ferrand, France
- Centre National de Référence des Cryptosporidioses, Microsporidies et Autres Protozooses Digestives, Laboratoire Associé de Clermont-Ferrand, Clermont-Ferrand, France
| | - Céline Lambert
- Unité de Biostatistiques, DRCI, CHU Clermont-Ferrand, Clermont-Ferrand, France
| | - Céline Nourrisson
- Service de Parasitologie-Mycologie, 3IHP, Inserm U1071, M2iSH, USC-INRAE 1382, Université Clermont Auvergne, CHU Clermont-Ferrand, Clermont-Ferrand, France
- Centre National de Référence des Cryptosporidioses, Microsporidies et Autres Protozooses Digestives, Laboratoire Associé de Clermont-Ferrand, Clermont-Ferrand, France
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Nourrisson C, Lavergne RA, Moniot M, Morio F, Poirier P. Enterocytozoon bieneusi, a human pathogen. Emerg Microbes Infect 2024; 13:2406276. [PMID: 39286988 PMCID: PMC11428314 DOI: 10.1080/22221751.2024.2406276] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2024] [Revised: 07/24/2024] [Accepted: 09/16/2024] [Indexed: 09/19/2024]
Abstract
Although brought to the forefront in the 1980s with the AIDS pandemic, microsporidia infecting humans are still little known. Enterocytozoon bieneusi, by far the most frequent microsporidia species causing diseases in humans, is responsible for intestinal illness in both non- and immunocompromised patients. This species presents an astonishing genetic diversity with more than 500 genotypes described, some of which have a strong zoonotic potential. Indeed, E. bieneusi infects a broad array of hosts, from wild to domestic animals. This emerging eukaryotic pathogen has thus been associated with foodborne/waterborne outbreaks. Several molecular assays have been developed to enhance its diagnosis or for epidemiological purposes, providing valuable new data. Here, we propose an overview of the current knowledge on this major species among the microsporidia, so far rather neglected in human medicine.
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Affiliation(s)
- Céline Nourrisson
- Parasitology & Mycology unit, 3IHP, University Hospital of Clermont-Ferrand, Clermont-Ferrand, France
- « Microbes, Intestin, Inflammation et Susceptibilité de l'Hôte » (M2iSH) unit, UMR Inserm/Université Clermont Auvergne U1071, USC INRAE 1382, Clermont-Ferrand, France
- National Reference Center for Cryptosporidiosis, Microsporidia and Other Digestive Protozoa, Clermont-Ferrand, France
| | - Rose-Anne Lavergne
- Nantes Université, CHU Nantes, Cibles et Médicaments des Infections et de l'Immunité, Nantes, France
| | - Maxime Moniot
- Parasitology & Mycology unit, 3IHP, University Hospital of Clermont-Ferrand, Clermont-Ferrand, France
- National Reference Center for Cryptosporidiosis, Microsporidia and Other Digestive Protozoa, Clermont-Ferrand, France
| | - Florent Morio
- Nantes Université, CHU Nantes, Cibles et Médicaments des Infections et de l'Immunité, Nantes, France
| | - Philippe Poirier
- Parasitology & Mycology unit, 3IHP, University Hospital of Clermont-Ferrand, Clermont-Ferrand, France
- « Microbes, Intestin, Inflammation et Susceptibilité de l'Hôte » (M2iSH) unit, UMR Inserm/Université Clermont Auvergne U1071, USC INRAE 1382, Clermont-Ferrand, France
- National Reference Center for Cryptosporidiosis, Microsporidia and Other Digestive Protozoa, Clermont-Ferrand, France
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Zhao Y, Zhang W, Zhang X. Application of metagenomic next-generation sequencing in the diagnosis of infectious diseases. Front Cell Infect Microbiol 2024; 14:1458316. [PMID: 39619659 PMCID: PMC11604630 DOI: 10.3389/fcimb.2024.1458316] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2024] [Accepted: 10/31/2024] [Indexed: 12/11/2024] Open
Abstract
Metagenomic next-generation sequencing (mNGS) is a transformative approach in the diagnosis of infectious diseases, utilizing unbiased high-throughput sequencing to directly detect and characterize microbial genomes from clinical samples. This review comprehensively outlines the fundamental principles, sequencing workflow, and platforms utilized in mNGS technology. The methodological backbone involves shotgun sequencing of total nucleic acids extracted from diverse sample types, enabling simultaneous detection of bacteria, viruses, fungi, and parasites without prior knowledge of the infectious agent. Key advantages of mNGS include its capability to identify rare, novel, or unculturable pathogens, providing a more comprehensive view of microbial communities compared to traditional culture-based methods. Despite these strengths, challenges such as data analysis complexity, high cost, and the need for optimized sample preparation protocols remain significant hurdles. The application of mNGS across various systemic infections highlights its clinical utility. Case studies discussed in this review illustrate its efficacy in diagnosing respiratory tract infections, bloodstream infections, central nervous system infections, gastrointestinal infections, and others. By rapidly identifying pathogens and their genomic characteristics, mNGS facilitates timely and targeted therapeutic interventions, thereby improving patient outcomes and infection control measures. Looking ahead, the future of mNGS in infectious disease diagnostics appears promising. Advances in bioinformatics tools and sequencing technologies are anticipated to streamline data analysis, enhance sensitivity and specificity, and reduce turnaround times. Integration with clinical decision support systems promises to further optimize mNGS utilization in routine clinical practice. In conclusion, mNGS represents a paradigm shift in the field of infectious disease diagnostics, offering unparalleled insights into microbial diversity and pathogenesis. While challenges persist, ongoing technological advancements hold immense potential to consolidate mNGS as a pivotal tool in the armamentarium of modern medicine, empowering clinicians with precise, rapid, and comprehensive pathogen detection capabilities.
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Affiliation(s)
- Yu Zhao
- Department of Urology Surgery, Beijing Chao-Yang Hospital Affiliated to Capital Medical University, Beijing, China
| | - Wenhui Zhang
- Department of Hepatobiliary Surgery, Beijing Chao-Yang Hospital Affiliated to Capital Medical University, Beijing, China
| | - Xin Zhang
- Department of Urology Surgery, Beijing Chao-Yang Hospital Affiliated to Capital Medical University, Beijing, China
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