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Dutrow EV, Serpell JA, Ostrander EA. Domestic dog lineages reveal genetic drivers of behavioral diversification. Cell 2022; 185:4737-4755.e18. [PMID: 36493753 PMCID: PMC10478034 DOI: 10.1016/j.cell.2022.11.003] [Citation(s) in RCA: 15] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2022] [Revised: 09/06/2022] [Accepted: 10/31/2022] [Indexed: 12/13/2022]
Abstract
Selective breeding of domestic dogs has generated diverse breeds often optimized for performing specialized tasks. Despite the heritability of breed-typical behavioral traits, identification of causal loci has proven challenging due to the complexity of canine population structure. We overcome longstanding difficulties in identifying genetic drivers of canine behavior by developing a framework for understanding relationships between breeds and the behaviors that define them, utilizing genetic data for over 4,000 domestic, semi-feral, and wild canids and behavioral survey data for over 46,000 dogs. We identify ten major canine genetic lineages and their behavioral correlates and show that breed diversification is predominantly driven by non-coding regulatory variation. We determine that lineage-associated genes converge in neurodevelopmental co-expression networks, identifying a sheepdog-associated enrichment for interrelated axon guidance functions. This work presents a scaffold for canine diversification that positions the domestic dog as an unparalleled system for revealing the genetic origins of behavioral diversity.
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Affiliation(s)
- Emily V Dutrow
- Cancer Genetics and Comparative Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA
| | - James A Serpell
- Department of Clinical Sciences and Advanced Medicine, University of Pennsylvania School of Veterinary Medicine, Philadelphia, PA 19104, USA
| | - Elaine A Ostrander
- Cancer Genetics and Comparative Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA.
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2
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Crossed-uncrossed projections from primate retina are adapted to disparities of natural scenes. Proc Natl Acad Sci U S A 2021; 118:2015651118. [PMID: 33574061 DOI: 10.1073/pnas.2015651118] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023] Open
Abstract
In mammals with frontal eyes, optic-nerve fibers from nasal retina project to the contralateral hemisphere of the brain, and fibers from temporal retina project ipsilaterally. The division between crossed and uncrossed projections occurs at or near the vertical meridian. If the division was precise, a problem would arise. Small objects near midline, but nearer or farther than current fixation, would produce signals that travel to opposite hemispheres, making the binocular disparity of those objects difficult to compute. However, in species that have been studied, the division is not precise. Rather, there are overlapping crossed and uncrossed projections such that some fibers from nasal retina project ipsilaterally as well as contralaterally and some from temporal retina project contralaterally as well as ipsilaterally. This increases the probability that signals from an object near vertical midline travel to the same hemisphere, thereby aiding disparity estimation. We investigated whether there is a deficit in binocular vision near the vertical meridian in humans and found no evidence for one. We also investigated the effectiveness of the observed decussation pattern, quantified from anatomical data in monkeys and humans. We used measurements of naturally occurring disparities in humans to determine disparity distributions across the visual field. We then used those distributions to calculate the probability of natural disparities transmitting to the same hemisphere, thereby aiding disparity computation. We found that the pattern of overlapping projections is quite effective. Thus, crossed and uncrossed projections from the retinas are well designed for aiding disparity estimation and stereopsis.
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3
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MRI- and histologically derived neuroanatomical atlas of the Ambystoma mexicanum (axolotl). Sci Rep 2021; 11:9850. [PMID: 33972650 PMCID: PMC8110773 DOI: 10.1038/s41598-021-89357-3] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2020] [Accepted: 04/12/2021] [Indexed: 02/03/2023] Open
Abstract
Amphibians are an important vertebrate model system to understand anatomy, genetics and physiology. Importantly, the brain and spinal cord of adult urodels (salamanders) have an incredible regeneration capacity, contrary to anurans (frogs) and the rest of adult vertebrates. Among these amphibians, the axolotl (Ambystoma mexicanum) has gained most attention because of the surge in the understanding of central nervous system (CNS) regeneration and the recent sequencing of its whole genome. However, a complete comprehension of the brain anatomy is not available. In the present study we created a magnetic resonance imaging (MRI) atlas of the in vivo neuroanatomy of the juvenile axolotl brain. This is the first MRI atlas for this species and includes three levels: (1) 82 regions of interest (ROIs) and a version with 64 ROIs; (2) a division of the brain according to the embryological origin of the neural tube, and (3) left and right hemispheres. Additionally, we localized the myelin rich regions of the juvenile brain. The atlas, the template that the atlas was derived from, and a masking file, can be found on Zenodo at https://doi.org/10.5281/zenodo.4595016 . This MRI brain atlas aims to be an important tool for future research of the axolotl brain and that of other amphibians.
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4
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Vigouroux RJ, Duroure K, Vougny J, Albadri S, Kozulin P, Herrera E, Nguyen-Ba-Charvet K, Braasch I, Suárez R, Del Bene F, Chédotal A. Bilateral visual projections exist in non-teleost bony fish and predate the emergence of tetrapods. Science 2021; 372:150-156. [PMID: 33833117 DOI: 10.1126/science.abe7790] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2020] [Accepted: 02/23/2021] [Indexed: 12/22/2022]
Abstract
In most vertebrates, camera-style eyes contain retinal ganglion cell neurons that project to visual centers on both sides of the brain. However, in fish, ganglion cells were thought to innervate only the contralateral side, suggesting that bilateral visual projections appeared in tetrapods. Here we show that bilateral visual projections exist in non-teleost fishes and that the appearance of ipsilateral projections does not correlate with terrestrial transition or predatory behavior. We also report that the developmental program that specifies visual system laterality differs between fishes and mammals, as the Zic2 transcription factor, which specifies ipsilateral retinal ganglion cells in tetrapods, appears to be absent from fish ganglion cells. However, overexpression of human ZIC2 induces ipsilateral visual projections in zebrafish. Therefore, the existence of bilateral visual projections likely preceded the emergence of binocular vision in tetrapods.
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Affiliation(s)
- Robin J Vigouroux
- Sorbonne Université, INSERM, CNRS, Institut de la Vision, 17 Rue Moreau, 75012 Paris, France
| | - Karine Duroure
- Sorbonne Université, INSERM, CNRS, Institut de la Vision, 17 Rue Moreau, 75012 Paris, France
| | - Juliette Vougny
- Institut Curie, PSL Research University, INSERM U934, CNRS UMR3215, Paris, France
| | - Shahad Albadri
- Sorbonne Université, INSERM, CNRS, Institut de la Vision, 17 Rue Moreau, 75012 Paris, France
| | - Peter Kozulin
- Queensland Brain Institute, The University of Queensland, Building 79, St Lucia Campus, Brisbane, QLD 4072, Australia
| | - Eloisa Herrera
- Instituto de Neurociencias, Av. Ramón y Cajal s/n, San Juan de Alicante, 03550 Spain
| | - Kim Nguyen-Ba-Charvet
- Sorbonne Université, INSERM, CNRS, Institut de la Vision, 17 Rue Moreau, 75012 Paris, France
| | - Ingo Braasch
- Department of Integrative Biology and Program in Ecology, Evolution, and Behavior, Michigan State University, 288 Farm Lane, East Lansing, MI 48824, USA
| | - Rodrigo Suárez
- Queensland Brain Institute, The University of Queensland, Building 79, St Lucia Campus, Brisbane, QLD 4072, Australia
| | - Filippo Del Bene
- Sorbonne Université, INSERM, CNRS, Institut de la Vision, 17 Rue Moreau, 75012 Paris, France.
| | - Alain Chédotal
- Sorbonne Université, INSERM, CNRS, Institut de la Vision, 17 Rue Moreau, 75012 Paris, France.
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5
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The Brain’s Asymmetric Frequency Tuning: Asymmetric Behavior Originates from Asymmetric Perception. Symmetry (Basel) 2020. [DOI: 10.3390/sym12122083] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022] Open
Abstract
To construct a coherent multi-modal percept, vertebrate brains extract low-level features (such as spatial and temporal frequencies) from incoming sensory signals. However, because frequency processing is lateralized with the right hemisphere favouring low frequencies while the left favours higher frequencies, this introduces asymmetries between the hemispheres. Here, we describe how this lateralization shapes the development of several cognitive domains, ranging from visuo-spatial and numerical cognition to language, social cognition, and even aesthetic appreciation, and leads to the emergence of asymmetries in behaviour. We discuss the neuropsychological and educational implications of these emergent asymmetries and suggest future research approaches.
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6
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Felisatti A, Laubrock J, Shaki S, Fischer MH. A biological foundation for spatial-numerical associations: the brain's asymmetric frequency tuning. Ann N Y Acad Sci 2020; 1477:44-53. [PMID: 32645221 DOI: 10.1111/nyas.14418] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2020] [Revised: 05/22/2020] [Accepted: 06/03/2020] [Indexed: 11/29/2022]
Abstract
"Left" and "right" coordinates control our spatial behavior and even influence abstract thoughts. For number concepts, horizontal spatial-numerical associations (SNAs) have been widely documented: we associate few with left and many with right. Importantly, increments are universally coded on the right side even in preverbal humans and nonhuman animals, thus questioning the fundamental role of directional cultural habits, such as reading or finger counting. Here, we propose a biological, nonnumerical mechanism for the origin of SNAs on the basis of asymmetric tuning of animal brains for different spatial frequencies (SFs). The resulting selective visual processing predicts both universal SNAs and their context-dependence. We support our proposal by analyzing the stimuli used to document SNAs in newborns for their SF content. As predicted, the SFs contained in visual patterns with few versus many elements preferentially engage right versus left brain hemispheres, respectively, thus predicting left-versus rightward behavioral biases. Our "brain's asymmetric frequency tuning" hypothesis explains the perceptual origin of horizontal SNAs for nonsymbolic visual numerosities and might be extensible to the auditory domain.
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Affiliation(s)
| | - Jochen Laubrock
- Department of Psychology, University of Potsdam, Potsdam, Germany.,Department of Psychology, Brandenburg Medical School Theodor Fontane, Neuruppin, Germany
| | - Samuel Shaki
- Department of Behavioral Sciences and Psychology, Ariel University, Ariel, Israel
| | - Martin H Fischer
- Department of Psychology, University of Potsdam, Potsdam, Germany
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7
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Ketter-Katz H, Lev-Ari T, Katzir G. Vision in chameleons-A model for non-mammalian vertebrates. Semin Cell Dev Biol 2020; 106:94-105. [PMID: 32576499 DOI: 10.1016/j.semcdb.2020.05.009] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2020] [Revised: 05/12/2020] [Accepted: 05/12/2020] [Indexed: 11/29/2022]
Abstract
Chameleons (Chamaeleonidae, Reptilia) are known for their extreme sensory and motor adaptations to arboreal life and insectivoury. They show most distinct sequences of visuo-motor patterns in threat avoidance and in predation with prey capture being performed by tongue strikes that are unparalleled in vertebrates. Optical adaptations result in retinal image enlargement and the unique capacity to determine target distance by accommodation cues. Ocular adaptations result in complex eye movements that are context dependent, not independent, as observed in threat avoidance and predation. In predation, evidence from the chameleons' capacity to track multiple targets support the view that their eyes are under individual controls. Eye movements and body movements are lateralised, with lateralisation being a function of many factors at the population, individual, and specific-situation levels. Chameleons are considered a potentially important model for vision in non-mammalian vertebrates. They provide exceptional behavioural tools for studying eye movements as well as information gathering and analysis. They open the field of lateralisation, decision making, and context dependence. Finally, chameleons allow a deeper examination of the relationships between their unique visuo-motor capacities and the central nervous system of reptiles and ectotherms, in general, as compared with mammals.
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Affiliation(s)
- Hadas Ketter-Katz
- Goldschleger Eye Institute, Sheba Medical Center, Tel-Hashomer, 52621, Israel; Sackler Faculty of Medicine, Tel-Aviv University, Tel-Aviv, 69978, Israel
| | - Tidhar Lev-Ari
- Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, GA, 30332, USA
| | - Gadi Katzir
- Department of Evolutionary and Environmental Biology, University of Haifa, 199 Aba Khoushy Ave., Mount Carmel, Haifa, 3498838, Israel.
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8
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Felisatti A, Laubrock J, Shaki S, Fischer MH. Commentary: A mental number line in human newborns. Front Hum Neurosci 2020; 14:99. [PMID: 32265677 PMCID: PMC7105603 DOI: 10.3389/fnhum.2020.00099] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2019] [Accepted: 03/04/2020] [Indexed: 12/02/2022] Open
Affiliation(s)
| | - Jochen Laubrock
- Department of Psychology, University of Potsdam, Potsdam, Germany
| | - Samuel Shaki
- Department of Behavioral Sciences, Ariel University, Ariel, Israel
| | - Martin H Fischer
- Department of Psychology, University of Potsdam, Potsdam, Germany
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9
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Borges R, Fonseca J, Gomes C, Johnson WE, O'Brien SJ, Zhang G, Gilbert MTP, Jarvis ED, Antunes A. Avian Binocularity and Adaptation to Nocturnal Environments: Genomic Insights from a Highly Derived Visual Phenotype. Genome Biol Evol 2020; 11:2244-2255. [PMID: 31386143 PMCID: PMC6735850 DOI: 10.1093/gbe/evz111] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 05/20/2019] [Indexed: 01/04/2023] Open
Abstract
Typical avian eyes are phenotypically engineered for photopic vision (daylight). In contrast, the highly derived eyes of the barn owl (Tyto alba) are adapted for scotopic vision (dim light). The dramatic modifications distinguishing barn owl eyes from other birds include: 1) shifts in frontal orientation to improve binocularity, 2) rod-dominated retina, and 3) enlarged corneas and lenses. Some of these features parallel mammalian eye patterns, which are hypothesized to have initially evolved in nocturnal environments. Here, we used an integrative approach combining phylogenomics and functional phenotypes of 211 eye-development genes across 48 avian genomes representing most avian orders, including the stem lineage of the scotopic-adapted barn owl. Overall, we identified 25 eye-development genes that coevolved under intensified or relaxed selection in the retina, lens, cornea, and optic nerves of the barn owl. The agtpbp1 gene, which is associated with the survival of photoreceptor populations, was pseudogenized in the barn owl genome. Our results further revealed that barn owl retinal genes responsible for the maintenance, proliferation, and differentiation of photoreceptors experienced an evolutionary relaxation. Signatures of relaxed selection were also observed in the lens and cornea morphology-associated genes, suggesting that adaptive evolution in these structures was essentially structural. Four eye-development genes (ephb1, phactr4, prph2, and rs1) evolved in positive association with the orbit convergence in birds and under relaxed selection in the barn owl lineage, likely contributing to an increased reliance on binocular vision in the barn owl. Moreover, we found evidence of coevolutionary interactions among genes that are expressed in the retina, lens, and optic nerve, suggesting synergetic adaptive events. Our study disentangles the genomic changes governing the binocularity and low-light perception adaptations of barn owls to nocturnal environments while revealing the molecular mechanisms contributing to the shift from the typical avian photopic vision to the more-novel scotopic-adapted eye.
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Affiliation(s)
- Rui Borges
- CIIMAR/CIMAR, Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Portugal.,Department of Biology, Faculty of Sciences, University of Porto, Portugal
| | - João Fonseca
- CIIMAR/CIMAR, Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Portugal
| | - Cidália Gomes
- CIIMAR/CIMAR, Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Portugal
| | - Warren E Johnson
- Smithsonian Conservation Biology Institute, National Zoological Park, Front Royal, Virginia.,Walter Reed Biosystematics Unit, Smithsonian Institution, Suitland, Maryland
| | - Stephen J O'Brien
- Theodosius Dobzhansky Center for Genome Bioinformatics, St. Petersburg State University, Russia.,Guy Harvey Oceanographic Center, Halmos College of Natural Sciences and Oceanography, Nova Southeastern University
| | - Guojie Zhang
- Section for Ecology and Evolution, Department of Biology, University of Copenhagen, Denmark.,China National GeneBank, BGI-Shenzen, Shenzhen, China.,State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, China
| | - M Thomas P Gilbert
- Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Denmark
| | - Erich D Jarvis
- Laboratory of Neurogenetics of Language, Rockefeller University.,Howard Hughes Medical Institute, Chevy Chase, Maryland
| | - Agostinho Antunes
- CIIMAR/CIMAR, Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Portugal.,Department of Biology, Faculty of Sciences, University of Porto, Portugal
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10
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Dell L, Innocenti GM, Hilgetag CC, Manger PR. Cortical and thalamic connectivity of occipital visual cortical areas 17, 18, 19, and 21 of the domestic ferret (
Mustela putorius furo
). J Comp Neurol 2019; 527:1293-1314. [DOI: 10.1002/cne.24631] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2018] [Revised: 12/19/2018] [Accepted: 01/02/2019] [Indexed: 12/21/2022]
Affiliation(s)
- Leigh‐Anne Dell
- Institute of Computational Neuroscience, University Medical Center Hamburg‐Eppendorf Hamburg Germany
| | - Giorgio M. Innocenti
- Department of NeuroscienceKarolinska Institute Stockholm Sweden
- Brain and Mind InstituteÉcole Polytechnique Fédérale de Lausanne Lausanne Switzerland
| | - Claus C. Hilgetag
- Institute of Computational Neuroscience, University Medical Center Hamburg‐Eppendorf Hamburg Germany
- Department of Health SciencesBoston University Boston Massachusetts
| | - Paul R. Manger
- School of Anatomical Sciences, Faculty of Health Sciences, University of the Witwatersrand Johannesburg South Africa
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11
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Enucleation in a Cownose Ray (Rhinoptera bonasus). Case Rep Vet Med 2018; 2018:5048948. [PMID: 29955436 PMCID: PMC6005293 DOI: 10.1155/2018/5048948] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2017] [Revised: 01/04/2018] [Accepted: 01/14/2018] [Indexed: 11/17/2022] Open
Abstract
Trauma is a common problem in Cownose Ray during mating season in both wild and captive rays. Enucleation is indicated when there is an ocular trauma. A 5-year-old female Cownose Ray (Rhinoptera bonasus) from Aquaria of Kuala Lumpur Convention Centre (KLCC) was presented to University Veterinary Hospital (UVH), Universiti Putra Malaysia, with a complaint of protruding left eye, which resulted from crushing into artificial coral during mating season. There were a hyphema in the traumatic left eye, periorbital tissue tear, exposed left eye socket, and multiple abrasions on both pectoral fins. The Cownose was anaesthetized and maintained with isoeugenol and on-field emergency enucleation of the left eye was performed. It was managed medically with postoperative enrofloxacin, tobramycin ointment, and povidone iodine. No suture breakdown and secondary infection were observed at day 7 after enucleation during revisit. At day 24 after enucleation, the Cownose responded well to treatment with excellent healing progression and no surgical complication was observed.
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12
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13
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Selective binocular vision loss in two subterranean caviomorph rodents: Spalacopus cyanus and Ctenomys talarum. Sci Rep 2017; 7:41704. [PMID: 28150809 PMCID: PMC5288697 DOI: 10.1038/srep41704] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2016] [Accepted: 12/19/2016] [Indexed: 11/09/2022] Open
Abstract
To what extent can the mammalian visual system be shaped by visual behavior? Here we analyze the shape of the visual fields, the densities and distribution of cells in the retinal ganglion-cell layer and the organization of the visual projections in two species of facultative non-strictly subterranean rodents, Spalacopus cyanus and Ctenomys talarum, aiming to compare these traits with those of phylogenetically closely related species possessing contrasting diurnal/nocturnal visual habits. S. cyanus shows a definite zone of frontal binocular overlap and a corresponding area centralis, but a highly reduced amount of ipsilateral retinal projections. The situation in C. talarum is more extreme as it lacks of a fronto-ventral area of binocular superposition, has no recognizable area centralis and shows no ipsilateral retinal projections except to the suprachiasmatic nucleus. In both species, the extension of the monocular visual field and of the dorsal region of binocular overlap as well as the whole set of contralateral visual projections, appear well-developed. We conclude that these subterranean rodents exhibit, paradoxically, diurnal instead of nocturnal visual specializations, but at the same time suffer a specific regression of the anatomical substrate for stereopsis. We discuss these findings in light of the visual ecology of subterranean lifestyles.
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