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For: Li Z, Hu L, Tang Z, Zhao C. Predicting HIV-1 Protease Cleavage Sites With Positive-Unlabeled Learning. Front Genet 2021;12:658078. [PMID: 33868387 PMCID: PMC8044780 DOI: 10.3389/fgene.2021.658078] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2021] [Accepted: 03/08/2021] [Indexed: 11/13/2022]  Open
Number Cited by Other Article(s)
1
Saez JA, Vera JF. Compact Class-Conditional Attribute Category Clustering: Amino Acid Grouping for Enhanced HIV-1 Protease Cleavage Classification. IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 2024;21:2167-2178. [PMID: 39178086 DOI: 10.1109/tcbb.2024.3448617] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/25/2024]
2
Ansari M, White AD. Learning peptide properties with positive examples only. DIGITAL DISCOVERY 2024;3:977-986. [PMID: 38756224 PMCID: PMC11094695 DOI: 10.1039/d3dd00218g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/05/2023] [Accepted: 03/30/2024] [Indexed: 05/18/2024]
3
Li Q, Lenertz M, Armstrong Z, MacRae A, Feng L, Ugrinov A, Yang Z. A Protocol to Depict the Proteolytic Processes Using a Combination of Metal-Organic Materials (MOMs), Electron Paramagnetic Resonance (EPR), and Mass Spectrometry (MS). Bio Protoc 2024;14:e4909. [PMID: 38213322 PMCID: PMC10777052 DOI: 10.21769/bioprotoc.4909] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2023] [Revised: 11/20/2023] [Accepted: 11/21/2023] [Indexed: 01/13/2024]  Open
4
Ansari M, White AD. Learning Peptide Properties with Positive Examples Only. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.06.01.543289. [PMID: 37333233 PMCID: PMC10274696 DOI: 10.1101/2023.06.01.543289] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/20/2023]
5
Onah E, Uzor PF, Ugwoke IC, Eze JU, Ugwuanyi ST, Chukwudi IR, Ibezim A. Prediction of HIV-1 protease cleavage site from octapeptide sequence information using selected classifiers and hybrid descriptors. BMC Bioinformatics 2022;23:466. [DOI: 10.1186/s12859-022-05017-x] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2022] [Accepted: 10/11/2022] [Indexed: 11/10/2022]  Open
6
Hu L, Li Z, Tang Z, Zhao C, Zhou X, Hu P. Effectively predicting HIV-1 protease cleavage sites by using an ensemble learning approach. BMC Bioinformatics 2022;23:447. [PMID: 36303135 PMCID: PMC9608884 DOI: 10.1186/s12859-022-04999-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2022] [Accepted: 10/13/2022] [Indexed: 11/10/2022]  Open
7
Hu L, Zhao BW, Yang S, Luo X, Zhou M. Predicting Large-scale Protein-protein Interactions by Extracting Coevolutionary Patterns with MapReduce Paradigm. 2021 IEEE INTERNATIONAL CONFERENCE ON SYSTEMS, MAN, AND CYBERNETICS (SMC) 2021:939-944. [DOI: 10.1109/smc52423.2021.9658839] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/03/2025]
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