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Wu CS, Liu FC, Lin SC, Chyuan IT. Regulation of T cell receptor (TCR) signaling by tyrosine phosphatases: Recent advances and implication for therapeutic approach in autoimmune diseases. J Formos Med Assoc 2025:S0929-6646(25)00192-5. [PMID: 40287371 DOI: 10.1016/j.jfma.2025.04.023] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2025] [Revised: 04/16/2025] [Accepted: 04/21/2025] [Indexed: 04/29/2025] Open
Abstract
The effector function of T cells is critical for regulation of the initiation and progression of autoimmune diseases; whereas the T cell activation and homeostasis are tightly controlled by signals from T cell receptor (TCR). The early TCR signaling pathways are dependent on rapid phosphorylation and dephosphorylation of multiple signaling proteins in the TCR complex. These processes are tightly regulated by the interplay between protein kinases and phosphatases, leading to T cell activation. Genetic polymorphisms of these kinases or phosphatases have been linked to an increased susceptibility to autoimmune disorders in humans. Mice with deficiencies in these corresponding genes often exhibit T cell hyper-reactivity and autoimmune phenotypes in animal models. Tyrosine phosphatases have been demonstrated to alter T cell fate by negatively regulating early TCR signaling. Therefore, the tyrosine phosphatases that regulate TCR signaling are emerging as potential therapeutic targets to modulate T cell responses for the treatment of autoimmune diseases. In this review, we provide an overview of the current progress and perspectives of tyrosine phosphatases that regulate TCR signaling in T cell activation, and their potential as therapeutic targets for autoimmune diseases.
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Affiliation(s)
- Chien-Sheng Wu
- Department of Internal Medicine, Far Eastern Memorial Hospital, New Taipei City, 22000, Taiwan
| | - Feng-Cheng Liu
- Department of Internal Medicine, Tri-Service General Hospital, National Defense Medical Center, Taipei, 11490, Taiwan
| | - Shih-Chang Lin
- Department of Internal Medicine, Cathay General Hospital, Taipei, 10630, Taiwan; School of Medicine, Fu-Jen Catholic University, New Taipei City, 242062, Taiwan
| | - I-Tsu Chyuan
- Department of Internal Medicine, Cathay General Hospital, Taipei, 10630, Taiwan; School of Medicine, National Tsing Hua University, Hsinchu, 30013, Taiwan; Department of Medical Research, Cathay General Hospital, Taipei, 10630, Taiwan.
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Benjamin SV, Taylor ME, Drickamer K. Application of a human lectin array to rapid in vitro screening of sugar-based epitopes that can be used as targeting tags for therapeutics. Glycobiology 2025; 35:cwaf011. [PMID: 40037288 PMCID: PMC11903255 DOI: 10.1093/glycob/cwaf011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2025] [Revised: 02/26/2025] [Accepted: 02/28/2025] [Indexed: 03/06/2025] Open
Abstract
An increasing number of clinical applications employ oligosaccharides as tags to direct therapeutic proteins and RNA molecules to specific target cells. Current applications are focused on endocytic receptors that result in cellular uptake, but additional applications of sugar-based targeting in signaling and protein degradation are emerging. These approaches all require development of ligands that bind selectively to specific sugar-binding receptors, known as lectins. In the work reported here, a human lectin array has been employed as a predictor of targeting selectivity of different oligosaccharide ligands and as a rapid in vitro screen to identify candidate targeting ligands. The approach has been validated with existing targeting ligands, such as a synthetic glycomimetic GalNAc cluster ligand that targets siRNA molecules to hepatocytes through the asialoglycoprotein receptor. Additional small oligosaccharides that could selectively target other classes of cells have also been identified and the potential of larger glycans derived from glycoproteins has been investigated. In initial screens, potential ligands for targeting either vascular or sinusoidal endothelial cells and plasmacytoid dendritic cells have been identified. Lectin array screening has also been used to characterize the selectivity of glycolipid-containing liposomes that are used as carriers for targeted delivery. The availability of a rapid in vitro screening approach to characterizing natural oligosaccharides and glycomimetic compounds has the potential to facilitate selection of appropriate targeting tags before undertaking more complex in vivo studies such as measuring clearance in animals.
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Affiliation(s)
- Stefi V Benjamin
- Department of Life Sciences, Sir Ernst Chain Building, Imperial College, London SW7 2AZ, United Kingdom
| | - Maureen E Taylor
- Department of Life Sciences, Sir Ernst Chain Building, Imperial College, London SW7 2AZ, United Kingdom
| | - Kurt Drickamer
- Department of Life Sciences, Sir Ernst Chain Building, Imperial College, London SW7 2AZ, United Kingdom
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Ariolli A, Agolini E, Mazza T, Petrizzelli F, Petrini S, D’Oria V, Cudini A, Nardella C, Pesce V, Comparcola D, Cappa M, Fierabracci A. The Putative Role of TIM-3 Variants in Polyendocrine Autoimmunity: Insights from a WES Investigation. Int J Mol Sci 2024; 25:10994. [PMID: 39456777 PMCID: PMC11506967 DOI: 10.3390/ijms252010994] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2024] [Revised: 10/08/2024] [Accepted: 10/10/2024] [Indexed: 10/28/2024] Open
Abstract
Autoimmune polyglandular syndrome (APS) comprises a complex association of autoimmune pathological conditions. APS Type 1 originates from loss-of-function mutations in the autoimmune regulator (AIRE) gene. APS2, APS3 and APS4 are linked to specific HLA alleles within the major histocompatibility complex, with single-nucleotide polymorphisms (SNPs) in non-HLA genes also contributing to disease. In general, variability in the AIRE locus and the presence of heterozygous loss-of-function mutations can impact self-antigen presentation in the thymus. In this study, whole-exome sequencing (WES) was performed on a sixteen-year-old female APS3A/B patient to investigate the genetic basis of her complex phenotype. The analysis identified two variants (p.Arg111Trp and p.Thr101Ile) of the hepatitis A virus cell receptor 2 gene (HAVCR2) encoding for the TIM-3 (T cell immunoglobulin and mucin domain 3) protein. These variants were predicted, through in silico analysis, to impact protein structure and stability, potentially influencing the patient's autoimmune phenotype. While confocal microscopy analysis revealed no alteration in TIM-3 fluorescence intensity between the PBMCs isolated from the patient and those of a healthy donor, RT-qPCR showed reduced TIM-3 expression in the patient's unfractionated PBMCs. A screening conducted on a cohort of thirty APS patients indicated that the p.Thr101Ile and p.Arg111Trp mutations were unique to the proband. This study opens the pathway for the search of TIM-3 variants possibly linked to complex autoimmune phenotypes, highlighting the potential of novel variant discovery in contributing to APS classification and diagnosis.
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Affiliation(s)
- Andrea Ariolli
- Bambino Gesù Children’s Hospital, Istituto di Ricovero e Cura a Carattere Scientifico (IRCCS), 00146 Rome, Italy; (A.A.); (T.M.); (A.C.); (C.N.); (V.P.); (D.C.)
| | - Emanuele Agolini
- Laboratory of Medical Genetics, Translational Cytogenomics Research Unit, Bambino Gesù Children’s Hospital, Istituto di Ricovero e Cura a Carattere Scientifico (IRCCS), 00146 Rome, Italy;
| | - Tommaso Mazza
- Bambino Gesù Children’s Hospital, Istituto di Ricovero e Cura a Carattere Scientifico (IRCCS), 00146 Rome, Italy; (A.A.); (T.M.); (A.C.); (C.N.); (V.P.); (D.C.)
- Laboratory of Bioinformatics, Casa Sollievo della Sofferenza, Istituto di Ricovero e Cura a Carattere Scientifico (IRCCS), 70013 San Giovanni Rotondo, Foggia, Italy;
| | - Francesco Petrizzelli
- Laboratory of Bioinformatics, Casa Sollievo della Sofferenza, Istituto di Ricovero e Cura a Carattere Scientifico (IRCCS), 70013 San Giovanni Rotondo, Foggia, Italy;
| | - Stefania Petrini
- Confocal Microscopy Core Facility, Bambino Gesù Children’s Hospital, Istituto di Ricovero e Cura a Carattere Scientifico (IRCCS), 00146 Rome, Italy; (S.P.); (V.D.)
| | - Valentina D’Oria
- Confocal Microscopy Core Facility, Bambino Gesù Children’s Hospital, Istituto di Ricovero e Cura a Carattere Scientifico (IRCCS), 00146 Rome, Italy; (S.P.); (V.D.)
| | - Annamaria Cudini
- Bambino Gesù Children’s Hospital, Istituto di Ricovero e Cura a Carattere Scientifico (IRCCS), 00146 Rome, Italy; (A.A.); (T.M.); (A.C.); (C.N.); (V.P.); (D.C.)
| | - Caterina Nardella
- Bambino Gesù Children’s Hospital, Istituto di Ricovero e Cura a Carattere Scientifico (IRCCS), 00146 Rome, Italy; (A.A.); (T.M.); (A.C.); (C.N.); (V.P.); (D.C.)
| | - Vanessa Pesce
- Bambino Gesù Children’s Hospital, Istituto di Ricovero e Cura a Carattere Scientifico (IRCCS), 00146 Rome, Italy; (A.A.); (T.M.); (A.C.); (C.N.); (V.P.); (D.C.)
| | - Donatella Comparcola
- Bambino Gesù Children’s Hospital, Istituto di Ricovero e Cura a Carattere Scientifico (IRCCS), 00146 Rome, Italy; (A.A.); (T.M.); (A.C.); (C.N.); (V.P.); (D.C.)
| | - Marco Cappa
- Research Unit Innovative Therapies for Endocrinopathies, Bambino Gesù Children’s Hospital, Istituto di Ricovero e Cura a Carattere Scientifico (IRCCS), 00146 Rome, Italy;
| | - Alessandra Fierabracci
- Bambino Gesù Children’s Hospital, Istituto di Ricovero e Cura a Carattere Scientifico (IRCCS), 00146 Rome, Italy; (A.A.); (T.M.); (A.C.); (C.N.); (V.P.); (D.C.)
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Cudini A, Nardella C, Bellacchio E, Palma A, Delfino DV, Betterle C, Cappa M, Fierabracci A. Analysis of the AIRE Gene Promoter in Patients Affected by Autoimmune Polyendocrine Syndromes. Int J Mol Sci 2024; 25:2656. [PMID: 38473903 PMCID: PMC10932416 DOI: 10.3390/ijms25052656] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2024] [Revised: 02/15/2024] [Accepted: 02/20/2024] [Indexed: 03/14/2024] Open
Abstract
Autoimmune polyglandular syndromes (APS) are classified into four main categories, APS1-APS4. APS1 is caused by AIRE gene loss of function mutations, while the genetic background of the other APS remains to be clarified. Here, we investigated the potential association between AIRE gene promoter Single Nucleotide Polymorphisms (SNPs) and susceptibility to APS. We sequenced the AIRE gene promoter of 74 APS patients, also analyzing their clinical and autoantibody profile, and we further conducted molecular modeling studies on the identified SNPs. Overall, we found 6 SNPs (-230Y, -655R, -261M, -380S, -191M, -402S) of the AIRE promoter in patients' DNA. Interestingly, folding free energy calculations highlighted that all identified SNPs, except for -261M, modify the stability of the nucleic acid structure. A rather similar percentage of APS3 and APS4 patients had polymorphisms in the AIRE promoter. Conversely, there was no association between APS2 and AIRE promoter polymorphisms. Further AIRE promoter SNPs were found in 4 out of 5 patients with APS1 clinical diagnosis that did not harbor AIRE loss of function mutations. We hypothesize that AIRE promoter polymorphisms could contribute to APS predisposition, although this should be validated through genetic screening in larger patient cohorts and in vitro and in vivo functional studies.
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Affiliation(s)
- Annamaria Cudini
- Bambino Gesù Children’s Hospital, IRCCS, 00165 Rome, Italy; (A.C.); (C.N.); (A.P.)
| | - Caterina Nardella
- Bambino Gesù Children’s Hospital, IRCCS, 00165 Rome, Italy; (A.C.); (C.N.); (A.P.)
| | - Emanuele Bellacchio
- Molecular Genetics and Functional Genomics, Bambino Gesù Children’s Hospital, IRCCS, 00165 Rome, Italy;
| | - Alessia Palma
- Bambino Gesù Children’s Hospital, IRCCS, 00165 Rome, Italy; (A.C.); (C.N.); (A.P.)
| | - Domenico Vittorio Delfino
- Section of Pharmacology, Department of Medicine and Surgery, University of Perugia, 06129 Perugia, Italy;
| | | | - Marco Cappa
- Research Unit for Innovative Therapies in Endocrinopathies, Bambino Gesù Children’s Hospital, IRCCS, 00165 Rome, Italy;
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Žak R, Navasardyan L, Hunák J, Martinů J, Heneberg P. PTPN22 intron polymorphism rs1310182 (c.2054-852T>C) is associated with type 1 diabetes mellitus in patients of Armenian descent. PLoS One 2023; 18:e0286743. [PMID: 37315092 DOI: 10.1371/journal.pone.0286743] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2023] [Accepted: 05/23/2023] [Indexed: 06/16/2023] Open
Abstract
Protein tyrosine phosphatase, nonreceptor type 22 (PTPN22), is an archetypal non-HLA autoimmunity gene. It is one of the most prominent genetic contributors to type 1 diabetes mellitus outside the HLA region, and prevalence of its risk variants is subject to enormous geographic variability. Here, we address the genetic background of patients with type 1 diabetes mellitus of Armenian descent. Armenia has a population that has been genetically isolated for 3000 years. We hypothesized that two PTPN22 polymorphisms, rs2476601 and rs1310182, are associated with type 1 diabetes mellitus in persons of Armenian descent. In this association study, we genotyped the allelic frequencies of two risk-associated PTPN22 variants in 96 patients with type 1 diabetes mellitus and 100 controls of Armenian descent. We subsequently examined the associations of PTPN22 variants with the manifestation of type 1 diabetes mellitus and its clinical characteristics. We found that the rs2476601 minor allele (c.1858T) frequency in the control population was very low (q = 0.015), and the trend toward increased frequency of c.1858CT heterozygotes among patients with type 1 diabetes mellitus was not significant (OR 3.34, 95% CI 0.88-12.75; χ2 test p > 0.05). The control population had a high frequency of the minor allele of rs1310182 (q = 0.375). The frequency of c.2054-852TC heterozygotes was significantly higher among the patients with type 1 diabetes mellitus (OR 2.39, 95% CI 1.35-4.24; χ2 test p < 0.001), as was the frequency of the T allele (OR 4.82, 95% CI 2.38-9.76; χ2 test p < 0.001). The rs2476601 c.1858CT genotype and the T allele correlated negatively with the insulin dose needed three to six months after diagnosis. The rs1310182 c.2054-852CC genotype was positively associated with higher HbA1c at diagnosis and 12 months after diagnosis. We have provided the first information on diabetes-associated polymorphisms in PTPN22 in a genetically isolated Armenian population. We found only a limited contribution of the prototypic gain-of-function PTPN22 polymorphism rs2476601. In contrast, we found an unexpectedly close association of type 1 diabetes mellitus with rs1310182.
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Affiliation(s)
- Robert Žak
- Third Faculty of Medicine, Charles University, Prague, Czech Republic
| | - Lusine Navasardyan
- Department of Endocrinology, Yerevan State Medical University after Mkhitar Heratsi, Yerevan, Armenia
| | - Ján Hunák
- Third Faculty of Medicine, Charles University, Prague, Czech Republic
| | - Jiřina Martinů
- Third Faculty of Medicine, Charles University, Prague, Czech Republic
| | - Petr Heneberg
- Third Faculty of Medicine, Charles University, Prague, Czech Republic
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Characterization of PDL1 enhanced siRNA/albumin liposome for effective therapeutic function in lung cancer. J Cancer Res Clin Oncol 2022:10.1007/s00432-022-04298-2. [PMID: 35997823 DOI: 10.1007/s00432-022-04298-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2022] [Accepted: 08/15/2022] [Indexed: 10/15/2022]
Abstract
PURPOSE The applications of liposomes are limited due to poor structural stability and short drug circulation time. This study aims to build an albumin-based liposomal delivery system to provide strategies for tumor specificity, efficient gene delivery and effective release of albumin liposomes. METHODS In this study, siRNA loaded PDL1-targeted albumin liposome was constructed for the treatment of lung cancer and its function was evaluated. Physical parameters such as particle size, potential and infrared spectrum were detected and microscopic morphology was observed by electron microscopy to detect the binding and uptake capacity of albumin liposome with cells. The optimal preparation process and binding ratio of PDL1-targeted albumin liposome/siRNA complex were determined. RESULTS The constructed siRNA loaded PDL1-targeted albumin liposomes has low toxicity, high loading rate and tumor cell targeted gene therapy ability. Moreover, it increased T cell activation and down-regulated siRNA expression, effectively realizing the inhibition of lung cancer cells. CONCLUSION The results showed that the PDL1-targeted albumin liposome could be used as a high efficient delivery vector of siRNA, and was a high efficient and safe nano vector for tumor targeted gene therapy.
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Simonis B, Vignone D, Gonzalez Paz O, Donati E, Falchetti ML, Bombelli C, Cellucci A, Auciello G, Fini I, Galantini L, Syeda RZ, Mazzonna M, Mongiardi MP, Buonocore F, Ceccacci F, Di Marco A, Mancini G. Transport of cationic liposomes in a human blood brain barrier model: Role of the stereochemistry of the gemini amphiphile on liposome biological features. J Colloid Interface Sci 2022; 627:283-298. [PMID: 35853406 DOI: 10.1016/j.jcis.2022.07.025] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2022] [Revised: 06/06/2022] [Accepted: 07/04/2022] [Indexed: 12/12/2022]
Abstract
HYPOTHESIS The positive charge on liposome surface is known to promote the crossing of the Blood brain barrier (BBB). However, when diastereomeric cationic gemini amphiphiles are among lipid membrane components, also the stereochemistry may affect the permeability of the vesicle across the BBB. EXPERIMENTS Liposomes featuring cationic diasteromeric gemini amphiphiles were formulated, characterized, and their interaction with cell culture models of BBB investigated. FINDINGS Liposomes featuring the gemini amphiphiles were internalized in a monolayer of brain microvascular endothelial cells derived from human induced pluripotent stem cells (hiPSC) through an energy dependent transport, internalization involving both clathrin- and caveolae-mediated endocytosis. On the same formulations, the permeability was also evaluated across a human derived in vitro BBB transport model. The permeability of liposomes featuring the gemini amphiphiles was significantly higher compared to that of neutral liposomes (DPPC/Cholesterol), that were not able to cross BBB. Most importantly, the permeability was influenced by the stereochemistry of the gemini and pegylation of these formulations did not result in a drastic reduction of the crossing ability. The in vitro iPSC-derived BBB models used in this work represent an important advancement in the drug discovery research of novel brain delivery strategies and therapeutics for central nervous system diseases.
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Affiliation(s)
- Beatrice Simonis
- Sapienza Università di Roma, Dipartimento di Chimica, P.le A. Moro 5, Rome, Italy; CNR-ISB, Istituto per i Sistemi Biologici, Sede Secondaria di Roma-Meccanismi di Reazione c/o Dipartimento di Chimica, Sapienza Università di Roma, P.le A. Moro 5, Rome, Italy
| | | | | | - Enrica Donati
- CNR-ISB, Istituto per i Sistemi Biologici, Area della Ricerca di Roma 1, Strada Provinciale 35d 9, 00020 Montelibretti, Rome, Italy
| | - Maria Laura Falchetti
- CNR-IBBC, Istituto di Biochimica e Biologia Cellulare, Via E. Ramarini, 32, 00015 MonterotondoScalo, Rome, Italy
| | - Cecilia Bombelli
- CNR-ISB, Istituto per i Sistemi Biologici, Sede Secondaria di Roma-Meccanismi di Reazione c/o Dipartimento di Chimica, Sapienza Università di Roma, P.le A. Moro 5, Rome, Italy
| | | | - Giulio Auciello
- IRBM SpA, via Pontina Km 30.600, 00071 Pomezia (Rome), Italy
| | - Ivan Fini
- IRBM SpA, via Pontina Km 30.600, 00071 Pomezia (Rome), Italy
| | - Luciano Galantini
- Sapienza Università di Roma, Dipartimento di Chimica, P.le A. Moro 5, Rome, Italy
| | - Rudaba Zaman Syeda
- Sapienza Università di Roma, Dipartimento di Chimica, P.le A. Moro 5, Rome, Italy
| | - Marco Mazzonna
- CNR-ISB, Istituto per i Sistemi Biologici, Area della Ricerca di Roma 1, Strada Provinciale 35d 9, 00020 Montelibretti, Rome, Italy
| | - Maria Patrizia Mongiardi
- CNR-IBBC, Istituto di Biochimica e Biologia Cellulare, Via E. Ramarini, 32, 00015 MonterotondoScalo, Rome, Italy
| | - Francesco Buonocore
- Dipartimento per la Innovazione nei sistemi biologici, agroalimentari e forestali, Università della Tuscia (DIBAF), Largo dell'Università snc, 01100 Viterbo, Italy
| | - Francesca Ceccacci
- CNR-ISB, Istituto per i Sistemi Biologici, Sede Secondaria di Roma-Meccanismi di Reazione c/o Dipartimento di Chimica, Sapienza Università di Roma, P.le A. Moro 5, Rome, Italy.
| | | | - Giovanna Mancini
- CNR-ISB, Istituto per i Sistemi Biologici, Area della Ricerca di Roma 1, Strada Provinciale 35d 9, 00020 Montelibretti, Rome, Italy
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