Influence of planting methods and organic amendments on rice yield and bacterial communities in the rhizosphere soil

Soil Bacterial Diversity and Community Structure of Cotton Rhizosphere under Mulched Drip-Irrigation in Arid and Semi-arid Regions of Northwest China

Xinjiang is situated in an arid and semi-arid region, where abundant heat and sunlight create highly favorable conditions for cotton cultivation. Xinjiang's cotton output accounts for nearly one-quarter of global production. Moreover, the implementation of advanced planting techniques, such as 'dwarfing, high-density, early-maturing' strategies combined with mulched drip irrigation, ensures stable and high yields in this region. Despite these advancements, limited research has focused on the microbial mechanisms in cotton fields employing these advanced planting methods. In this study, high-throughput sequencing technology was utilized to investigate the diversity and composition of bacterial and phoD (Alkaline phosphatases encoding gene) communities in the rhizosphere of cotton grown under different yield levels in Xinjiang Province, China. The Mantel test, redundancy analysis (RDA) and partial least squares path modeling (PLS-PM) were employed to explore the interactions between soil bacterial and phoD communities, their network structures, and environmental factors. The bacterial and phoD communities in the cotton rhizosphere were predominantly composed of nine bacterial phyla (i.e., Proteobacteria, Actinobacteria, Acidobacteria, Gemmatimonadetes, Chloroflexi, Bacteroidetes, Rokubacteria, Firmicutes, and Nitrospirae) and five phoD phyla (i.e., Proteobacteria, Actinobacteria, Planctomycetes, Acidobacteria, and Firmicutes), respectively. Alpha diversity analysis indicated that the medium yield cotton field (MYF) exhibited higher bacterial richness and diversity indices compared to low yield (LYF) and high yield (HYF) fields. The symbiotic network analysis of LYF revealed greater values of average degree, number of edges, and modularity, suggesting a more complex network structure in both bacterial and phoD communities. The Mantel test, RDA, and PLS-PM model identified soil pH, electrical conductivity (EC), organic phosphorus (OP), available phosphorus (AP), total nitrogen (TN), microbial biomass carbon (MBC), and clay content as the main driving factors influencing changes in the rhizosphere bacterial community diversity and network structure. These findings provide a theoretical basis for future research aimed at improving soil quality and cotton yield.

The economic benefits, energy use efficiency, and carbon footprint of fragrant super rice and nonfragrant super rice under different planting methods and nitrogen levels

BACKGROUND

The objective of this study was to investigate the input and output of energy, carbon input and sequestration, and economic benefits of fragrant and nonfragrant rice under different crop management practices, with the aim of providing theoretical guidance for sustainable rice production. Two high-yield and popular rice varieties, Yuxiangyouzhan and Jiyou615, were grown under three nitrogen fertilizer levels (0, 150, and 220 kg ha-1) and three planting methods (manual transplanting, mechanical transplanting, and mechanical direct seeding) during 2018 and 2019.

RESULTS

The results showed that the economic, energy, and carbon benefits of the different rice varieties varied in response to the different fertilizations and planting methods. The average energy outputs of Yuxiangyouzhan and Jiyou615 were 214 423.26 and 218 474.90 MJ ha-1, respectively. The mean harvest index and mean energy use efficiency of Jiyou615 were slightly greater, at 4.21% and 3.93%, respectively, than those of Yuxiangyouzhan, while the mean carbon input-sequestration ratio of Yuxiangyouzhan was slightly greater, at 1.79%, than that of Jiyou615. Yuxiangyouzhan had a significantly greater mean benefit-cost ratio (5.76%) than Jiyou615. In addition, Yuxiangyouzhan had a significantly greater mean nominal economic return on energy input (12.21%), nominal economic return on energy output (13.20%), nominal economic return on carbon input (12.65%), and nominal economic return on carbon sequestration (11.31%) than Jiyou615.

CONCLUSION

The results suggest that suitable high-yield and high-quality varieties with better consumer demand and the synergistic effect of variety and crop management in sustainable rice production are highly meaningful. © 2025 Society of Chemical Industry.

Rhizosphere Microbiome and Functioning in Alternative Rice Cropping Methods: A Critical Review for Rice Sustainability

Rice is a staple crop worldwide, providing sustenance to over half the global population. The rice microbiome represents the complex interaction between rice plants and their surrounding microbial communities. Plants host various microorganisms in different regions, including the rhizosphere, surface tissues, such as the rhizoplane and phylloplane, and inner tissues (endosphere). These microorganisms engage in diverse interactions with the plants, ranging from beneficial to neutral or harmful. This rhizosphere microbiome plays a crucial role in improving the resilience and sustainability of rice cultivation. The relationship between the rice plants and their microbial communities is imperative for developing farming practices that maximize yields while minimizing biotic and abiotic stresses. Our examination underscores the diverse functions of rhizosphere microbiota within rice farming systems, particularly in nutrient uptake, drought resilience, pest and disease management, and tolerance to salinity. This review describes the different types of rice cultivation methods farmers use worldwide to improve the efficiency of rice production in various agro-ecological contexts. Moreover, the review details how alternate cropping methods influence the rhizosphere functioning of rice and techniques for managing the microbiome function for rice sustainability.

The synergistic interaction effect between biochar and plant growth-promoting rhizobacteria on beneficial microbial communities in soil

Excessive use of chemical fertilizers and extensive farming can degrade soil properties so that leading to decline in crop yields. Combining plant growth-promoting rhizobacteria (PGPR) with biochar (BC) may be an alternative way to mitigate this situation. However, the proportion of PGPR and BC at which crop yield can be improved, as well as the improvement effect extent on different eco-geographic region and crops, remain unclear. This research used cabbage [Brassica pekinensis (Lour.) Rupr.] as the target crop and established as treatment conventional fertilization as a control and a 50% reduction in nitrogen fertilizer at the Yunnan-Guizhou Plateau of China, adding BC or PGPR to evaluate the effects of different treatments on cabbage yield and the soil physicochemical properties. Specifically, high-throughput sequencing probed beneficial soil microbial communities and investigated the impact of BC and PGPR on cabbage yield and soil properties. The results revealed that the soil alkaline hydrolyzable nitrogen (AH-N), available phosphorus (AP), and available potassium (AK) contents were higher in the BC application than in control. The BC application or mixed with PGPR significantly increased the soil organic matter (OM) content (P<0.05), with a maximum of 42.59 g/kg. Further, applying BC or PGPR significantly increased the abundance of beneficial soil microorganisms in the whole growth period of cabbage (P<0.05), such as Streptomyces, Lysobacter, and Bacillus. Meanwhile, the co-application of BC and PGPR increased the abundance of Pseudomonas, and also significantly enhanced the Shannon index and Simpson index of bacterial community (P<0.05). Combined or not with PGPR, the BC application significantly enhanced cabbage yield (P<0.05), with the highest yield reached 1.41 fold of the control. Our research indicated that BC is an suitable and promising carrier of PGPR for soil improvement, combining BC and PGPR can effectively ameliorate the diversity of bacterial community even in acid red soil rhizosphere, and the most direct reflection is to improve soil fertility and cabbage yield.

Promotion of rice seedlings growth and enhancement of cadmium immobilization under cadmium stress with two types of organic fertilizer

Cadmium (Cd)-contaminated soil poses a severe threat to crop production and human health, while also resulting in a waste of land resources. In this study, two types of organic fertilizer (ZCK: Low-content available iron; Z2: High-content available iron) were applied to Cd-contaminated soil for rice cultivation, and the effects of the fertilizer on rice growth and Cd passivation were investigated in conjunction with soil microbial analysis. Results showed that Z2 could alter the composition, structure, and diversity of microbial communities, as well as enhance the complexity and stability of the microbial network. Both 2% and 5% Z2 significantly increased the fresh weight and dry weight of rice plants while suppressing Cd absorption. The 2% Z2 exhibited the best Cd passivation effect. Gene predictions suggested that Z2 may promote plant growth by regulating microbial production of organic acids that dissolve phosphorus and potassium. Furthermore, it is suggested that Z2 may facilitate the absorption and immobilization of soil cadmium through the regulation of microbial cadmium efflux and uptake systems, as well as via the secretion of extracellular polysaccharides. In summary, Z2 can promote rice growth, suppress Cd absorption by rice, and passivate soil Cd by regulating soil microbial communities.

Impacts of various amendments on the microbial communities and soil organic carbon of coastal saline-alkali soil in the Yellow River Delta

The utilization of industrial and agricultural resources, such as desulfurization gypsum and straw, is increasingly favored to improve saline alkali land. However, there is still a lack of comprehensive study on the mechanism of organic carbon turnover under the conditions of desulfurization gypsum and straw application. We studied the changes in soil chemical performance, microbial diversity, and microbial community structure in soils with the addition of various levels of straw (no straw, S0; low straw, Sl; medium straw, Sm; and high straw, Sh) and gypsum (no gypsum, DG0; low gypsum, DGl; and high gypsum, DGh) in a 120-day incubation experiment. The bacterial and fungal community richness was higher in the SmDGl treatment than in the SmDG0 treatment. The microbial community evenness showed a similar pattern between the SmDGl and SmDG0 treatments. The combination of the straw and desulfurization gypsum treatments altered the relative abundance of the main bacterial phyla Bacteroidetes and Firmicutes and the dominant fungal class Sordariomycetes, which increased with the enhancement of the SOC ratio. The combination of the straw and desulfurization gypsum treatments, particularly SmDGl, significantly decreased the soil pH and exchangeable sodium percentage (ESP), while it increased the soil organic carbon, microbial biomass carbon, and activities of soil enzymes. Improvement in the soil salinization environment clearly drove the changes in bacterial α-diversity and community, particularly those in the soil carbon fractions and ESP. In conclusion, these findings provide a strong framework to determine the impact of application practices on soil restoration, and the information gained in this study will help to develop more sustainable and effective integrated strategies for the restoration of saline-alkali soil.

Stenotrophomonas pavanii DJL-M3 inoculated biochar stabilizes the rhizosphere soil homeostasis of carbendazim-stressed rice

Plant-microbe interactions have been effectively used in phytoremediation to reduce agrochemical contamination of crops and soils, but little information is available regarding the general effect of such association on rhizosphere soil homeostasis. In this study, we immobilized Stenotrophomonas pavanii DJL-M3, a carbendazim (CBZ)-degrading endophyte, in rice husk-derived biochar to control fungicide residue in the rice microenvironment. The influence of biochar inoculated with strain DJL-M3 on rhizobacterial communities was also investigated, including activity and fundamental function predictions. An adsorption kinetics test showed that strain DJL-M3 slowed the adsorption rate slightly without sacrificing the adsorption capacity of rice-husk biochar on CBZ. Immobilization in biochar helped S. pavanii DJL-M3 to establish an ecological niche in rhizosphere soils. This process significantly reduced CBZ levels in rice and rhizosphere soil while maintaining stable heterotrophic microbial respiration and carbon (C) metabolic activity. Soil amendment with the strain DJL-M3-biochar composite resulted in relatively little disturbance of fundamental soil functions, such as nitrogen (N) and sulfur (S) cycling, which explained the better plant growth and higher soil fertility observed with CBZ contamination. Overall, the combination of biochar and S. pavanii DJL-M3 demonstrated the potential to safeguard the microbiological environment of rice.