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Buirs L, Punja ZK. Endophytes in Cannabis sativa: Identifying and Characterizing Microbes with Beneficial and Detrimental Effects on Plant Health. PLANTS (BASEL, SWITZERLAND) 2025; 14:1247. [PMID: 40284136 PMCID: PMC12030312 DOI: 10.3390/plants14081247] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/17/2025] [Revised: 04/11/2025] [Accepted: 04/17/2025] [Indexed: 04/29/2025]
Abstract
The roles of endophytes in Cannabis sativa (cannabis, hemp) remain poorly explored. While in vitro studies suggest that there can be several benefits, such as plant growth promotion and protection against pathogens, more in planta studies are needed. This review summarizes the bacterial and fungal endophytes previously reported in tissues of C. sativa and discusses the factors influencing their presence, as well as their potential beneficial and detrimental effects. Using genome sequencing and culture-based approaches, we describe the microbial diversity in hydroponically cultivated cannabis plants at several developmental stages. These include mother plants, cuttings, vegetative and flowering plants, and tissue-cultured plantlets. Microbes that were present include fungal, yeast, and bacterial endophytes found in roots, stems, leaves, inflorescences, and seeds. These may have originated from the growing substrate or be transmitted through vegetative propagation. Notable endophytes included Rhizophagus irregularis (a mycorrhizal fungus), Penicillium chrysogenum (an antibiotic producer), and various endophytic yeast species not previously described in C. sativa. Endophytes representing potential plant pathogens, such as Fusarium oxysporum, are also present within cannabis tissues, which can negatively impact plant health. Using scanning electron microscopy, we observed that fungal propagules are present within pith parenchyma cells and xylem vessel elements in stem tissues, illustrating for the first time the in situ localization and distribution of endophytes in cannabis vascular tissues. The mechanism of spread through xylem vessels likely contributes to the spread of endophytes within cannabis and hemp plants. Further research is required to validate the roles of endophytes in cannabis and hemp plants grown under commercial production conditions.
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Affiliation(s)
- Liam Buirs
- Pure Sunfarms Corp., Delta, BC V4K 3N3, Canada;
- Department of Biological Sciences, Simon Fraser University, Burnaby, BC V5A 1S6, Canada
| | - Zamir K. Punja
- Department of Biological Sciences, Simon Fraser University, Burnaby, BC V5A 1S6, Canada
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Zhou C, Lavender I, Gordon R, McCartney D, Kevin RC, Bedoya-Pérez MA, McGregor IS. An analysis of the cultivation, consumption and composition of home-grown cannabis following decriminalisation in the Australian Capital Territory. Sci Rep 2025; 15:2649. [PMID: 39905040 PMCID: PMC11794705 DOI: 10.1038/s41598-024-84897-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2024] [Accepted: 12/30/2024] [Indexed: 02/06/2025] Open
Abstract
The Australian Capital Territory (ACT), a region that includes Australia's capital, Canberra, decriminalised small-scale cannabis cultivation and possession in January 2020. Here, we examined cannabis use and cultivation behaviours, experiences and attitudes of current and past small-scale ACT cannabis cultivators. ACT residents (n = 311) who currently cultivate or have previously cultivated cannabis completed a cross-sectional online survey ('CAN-ACT') and provided home-grown cannabis for phytocannabinoid analysis (optional). Reasons for cultivation included a preference for home-grown cannabis to self-supply, enjoyment of the process and avoiding criminal networks. Cannabis intake was a median of 1 gram on a typical day used and the number of plants grown per year was a median of 4. Various cultivation challenges were identified, most commonly mould, nutrient deficiency and spider mites. Cannabis samples (n = 71) generally exhibited moderate THC content (mean 8.99 ± SEM 0.51% [w/w]) and low CBD content (< 0.1%). Few samples exceeded contaminant guidelines for heavy metals or pesticides. Respondents identified various grey areas in current legislation that might lead to inadvertent criminal activity, and many (52%) remained anxious about arrest. In general, recent legislative changes appear to support community needs. Options for further legislative refinement are discussed.
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Affiliation(s)
- Cilla Zhou
- The Lambert Initiative for Cannabinoid Therapeutics, Brain and Mind Centre, The University of Sydney, Level 6, Building F, 94 Mallet St, Camperdown, Sydney, NSW, 2050, Australia
- Faculty of Medicine and Health, School of Pharmacy, School of Medical Sciences, The University of Sydney, Sydney, NSW, 2006, Australia
- The National Drug and Alcohol Research Centre (NDARC), University of New South Wales, 22-32 King St, Randwick, NSW, 2031, Australia
- The National Centre for Clinical Research on Emerging Drugs (NCCRED), c/o University of New South Wales, 22-32 King St, Randwick, NSW, 2031, Australia
| | - Isobel Lavender
- The Lambert Initiative for Cannabinoid Therapeutics, Brain and Mind Centre, The University of Sydney, Level 6, Building F, 94 Mallet St, Camperdown, Sydney, NSW, 2050, Australia
- Faculty of Science, School of Psychology, The University of Sydney, Sydney, NSW, 2006, Australia
| | - Rebecca Gordon
- The Lambert Initiative for Cannabinoid Therapeutics, Brain and Mind Centre, The University of Sydney, Level 6, Building F, 94 Mallet St, Camperdown, Sydney, NSW, 2050, Australia
- Faculty of Medicine and Health, School of Pharmacy, School of Medical Sciences, The University of Sydney, Sydney, NSW, 2006, Australia
| | - Danielle McCartney
- The Lambert Initiative for Cannabinoid Therapeutics, Brain and Mind Centre, The University of Sydney, Level 6, Building F, 94 Mallet St, Camperdown, Sydney, NSW, 2050, Australia
- Faculty of Science, School of Psychology, The University of Sydney, Sydney, NSW, 2006, Australia
| | - Richard C Kevin
- The Lambert Initiative for Cannabinoid Therapeutics, Brain and Mind Centre, The University of Sydney, Level 6, Building F, 94 Mallet St, Camperdown, Sydney, NSW, 2050, Australia
- Faculty of Medicine and Health, School of Pharmacy, School of Medical Sciences, The University of Sydney, Sydney, NSW, 2006, Australia
- Department of Clinical Pharmacology and Toxicology, St Vincent's Hospital Sydney, Sydney, NSW, 2010, Australia
- School of Clinical Medicine, Faculty of Medicine & Health, The University of New South Wales, Sydney, NSW, 2031, Australia
| | - Miguel A Bedoya-Pérez
- The Lambert Initiative for Cannabinoid Therapeutics, Brain and Mind Centre, The University of Sydney, Level 6, Building F, 94 Mallet St, Camperdown, Sydney, NSW, 2050, Australia
- Faculty of Science, School of Psychology, The University of Sydney, Sydney, NSW, 2006, Australia
| | - Iain S McGregor
- The Lambert Initiative for Cannabinoid Therapeutics, Brain and Mind Centre, The University of Sydney, Level 6, Building F, 94 Mallet St, Camperdown, Sydney, NSW, 2050, Australia.
- Faculty of Science, School of Psychology, The University of Sydney, Sydney, NSW, 2006, Australia.
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Cho JY, Ryu DH, Hamayun M, Lee SH, Jung JH, Kim HY. Scent Knows Better: Utilizing Volatile Organic Compounds as a Robust Tool for Identifying Higher Cannabidiol- and Tetrahydrocannabinol-Containing Cannabis Cultivars in Field Conditions. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2024; 72:24711-24723. [PMID: 39468951 DOI: 10.1021/acs.jafc.4c06652] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/30/2024]
Abstract
The primary cannabinoids cannabidiol (CBD) and tetrahydrocannabinol (THC), found in cannabis, are known to originate from genetic diversity, resulting in distinct characteristics. This study aimed to identify VOC markers to distinguish between higher CBD and THC cannabis cultivars under field conditions. Among the 58 VOCs, β-caryophyllene and α-humulene were primary VOCs across all cannabis cultivars. Intriguingly, certain terpene VOCs exhibited contrasting trends between higher CBD and higher THC cannabis cultivars. Eudesma-3,7(11)-diene and α-guaiol consistently appeared as highlighted compounds, suggesting their potential to distinguish between higher CBD and THC cannabis cultivars. ROC curve analysis revealed approximately 94% predictive accuracy for these putative markers. Given the current focus on VOCs as sensor markers for plant health, growth, and quality, the identified VOC markers─applicable across varieties and growth stages─could enable nondestructive, rapid, and accurate identification of CBD- and THC-rich cannabis species in field conditions.
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Affiliation(s)
- Jwa Yeong Cho
- Smart Farm Research Center, Korea Institute of Science and Technology (KIST), Gangneung, Gangwon 25451, Republic of Korea
| | - Da Hye Ryu
- Smart Farm Research Center, Korea Institute of Science and Technology (KIST), Gangneung, Gangwon 25451, Republic of Korea
| | - Muhammad Hamayun
- Smart Farm Research Center, Korea Institute of Science and Technology (KIST), Gangneung, Gangwon 25451, Republic of Korea
- Department of Botany, Garden Campus, Abdul Wali Khan University Mardan, Nowshera Mardan Rd, Mardan 23200, Pakistan
| | - Su Hyeon Lee
- Department of southern area crop science, National institute of crop science, Rural development administration, Miryang, Gyeongnam 50424, Republic of Korea
| | - Je Hyeong Jung
- Division of Biotechnology, College of Life Sciences & Biotechnology, Korea University, Seoul 02841, Republic of Korea
| | - Ho-Youn Kim
- Smart Farm Research Center, Korea Institute of Science and Technology (KIST), Gangneung, Gangwon 25451, Republic of Korea
- Natural Product Applied Science, KIST school, University of Science and Technology (UST), Gangneung, Gangwon 25451, Republic of Korea
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Eidem T, Nordgren T, Hernandez M. Bioaerosol Exposures and Respiratory Diseases in Cannabis Workers. Curr Allergy Asthma Rep 2024; 24:395-406. [PMID: 38878249 PMCID: PMC11233357 DOI: 10.1007/s11882-024-01157-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 06/10/2024] [Indexed: 07/10/2024]
Abstract
PURPOSE OF REVIEW This review investigates occupational inhalation hazards associated with biologically derived airborne particles (bioaerosols) generated in indoor cannabis cultivation and manufacturing facilities. RECENT FINDINGS Indoor cannabis production is growing across the US as are recent reports of respiratory diseases among cannabis workers, including occupational asthma morbidity and mortality. More information is needed to understand how bioaerosol exposure in cannabis facilities impacts worker health and occupational disease risk. Preliminary studies demonstrate a significant fraction of airborne particles in cannabis facilities are comprised of fungal spores, bacteria, and plant material, which may also contain hazardous microbial metabolites and allergens. These bioaerosols may pose pathogenic, allergenic, toxigenic, and pro-inflammatory risks to workers. The absence of multi-level, holistic bioaerosol research in cannabis work environments necessitates further characterization of the potential respiratory hazards and effective risk prevention methods to safeguard occupational health as the cannabis industry continues to expand across the US and beyond.
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Affiliation(s)
- Tess Eidem
- Department of Civil, Environmental, and Architectural Engineering, University of Colorado Boulder, Boulder, CO, 80309-0428, US.
| | - Tara Nordgren
- Department of Environmental and Radiological Health Sciences, Colorado State University, Fort Collins, CO, 80523-1601, US
| | - Mark Hernandez
- Department of Civil, Environmental, and Architectural Engineering, University of Colorado Boulder, Boulder, CO, 80309-0428, US
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Buirs L, Punja ZK. Integrated Management of Pathogens and Microbes in Cannabis sativa L. (Cannabis) under Greenhouse Conditions. PLANTS (BASEL, SWITZERLAND) 2024; 13:786. [PMID: 38592798 PMCID: PMC10974757 DOI: 10.3390/plants13060786] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/03/2024] [Revised: 03/02/2024] [Accepted: 03/06/2024] [Indexed: 04/11/2024]
Abstract
The increased cultivation of high THC-containing Cannabis sativa L. (cannabis), particularly in greenhouses, has resulted in a greater incidence of diseases and molds that can negatively affect the growth and quality of the crop. Among them, the most important diseases are root rots (Fusarium and Pythium spp.), bud rot (Botrytis cinerea), powdery mildew (Golovinomyces ambrosiae), cannabis stunt disease (caused by hop latent viroid), and a range of microbes that reduce post-harvest quality. An integrated management approach to reduce the impact of these diseases/microbes requires combining different approaches that target the reproduction, spread, and survival of the associated pathogens, many of which can occur on the same plant simultaneously. These approaches will be discussed in the context of developing an integrated plan to manage the important pathogens of greenhouse-grown cannabis at different stages of plant development. These stages include the maintenance of stock plants, propagation through cuttings, vegetative growth of plants, and flowering. The cultivation of cannabis genotypes with tolerance or resistance to various pathogens is a very important approach, as well as the maintenance of pathogen-free stock plants. When combined with cultural approaches (sanitation, management of irrigation, and monitoring for diseases) and environmental approaches (greenhouse climate modification), a significant reduction in pathogen development and spread can be achieved. The use of preventive applications of microbial biological control agents and reduced-risk biorational products can also reduce disease development at all stages of production in jurisdictions where they are registered for use. The combined use of promising strategies for integrated disease management in cannabis plants during greenhouse production will be reviewed. Future areas for research are identified.
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Affiliation(s)
- Liam Buirs
- Pure Sunfarms Corp., Delta, BC V4K 3N3, Canada;
| | - Zamir K. Punja
- Department of Biological Sciences, Simon Fraser University, Burnaby, BC V5A 1S6, Canada
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Punja ZK, Kahl D, Reade R, Xiang Y, Munz J, Nachappa P. Challenges to Cannabis sativa Production from Pathogens and Microbes-The Role of Molecular Diagnostics and Bioinformatics. Int J Mol Sci 2023; 25:14. [PMID: 38203190 PMCID: PMC10779078 DOI: 10.3390/ijms25010014] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2023] [Revised: 11/22/2023] [Accepted: 11/29/2023] [Indexed: 01/12/2024] Open
Abstract
The increased cultivation of Cannabis sativa L. in North America, represented by high Δ9-tetrahydrocannabinol-containing (high-THC) cannabis genotypes and low-THC-containing hemp genotypes, has been impacted by an increasing number of plant pathogens. These include fungi which destroy roots, stems, and leaves, in some cases causing a build-up of populations and mycotoxins in the inflorescences that can negatively impact quality. Viroids and viruses have also increased in prevalence and severity and can reduce plant growth and product quality. Rapid diagnosis of the occurrence and spread of these pathogens is critical. Techniques in the area of molecular diagnostics have been applied to study these pathogens in both cannabis and hemp. These include polymerase chain reaction (PCR)-based technologies, including RT-PCR, multiplex RT-PCR, RT-qPCR, and ddPCR, as well as whole-genome sequencing (NGS) and bioinformatics. In this study, examples of how these technologies have enhanced the rapidity and sensitivity of pathogen diagnosis on cannabis and hemp will be illustrated. These molecular tools have also enabled studies on the diversity and origins of specific pathogens, specifically viruses and viroids, and these will be illustrated. Comparative studies on the genomics and metabolomics of healthy and diseased plants are urgently needed to provide insight into their impact on the quality and composition of cannabis and hemp-derived products. Management of these pathogens will require monitoring of their spread and survival using the appropriate technologies to allow accurate detection, followed by appropriate implementation of disease control measures.
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Affiliation(s)
- Zamir K. Punja
- Department of Biological Sciences, Simon Fraser University, Burnaby, BC V5A 1S6, Canada
| | - Dieter Kahl
- Agriculture and Agri-Food Canada, Summerland Research and Development Center, Summerland, BC V5A 1S6, Canada; (D.K.); (R.R.); (Y.X.)
| | - Ron Reade
- Agriculture and Agri-Food Canada, Summerland Research and Development Center, Summerland, BC V5A 1S6, Canada; (D.K.); (R.R.); (Y.X.)
| | - Yu Xiang
- Agriculture and Agri-Food Canada, Summerland Research and Development Center, Summerland, BC V5A 1S6, Canada; (D.K.); (R.R.); (Y.X.)
| | - Jack Munz
- 3 Rivers Biotech, Coquitlam, BC V5A 1S6, Canada;
| | - Punya Nachappa
- Department of Agricultural Biology, Colorado State University, Fort Collins, CO 80523-1177, USA;
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Gwinn KD, Leung MCK, Stephens AB, Punja ZK. Fungal and mycotoxin contaminants in cannabis and hemp flowers: implications for consumer health and directions for further research. Front Microbiol 2023; 14:1278189. [PMID: 37928692 PMCID: PMC10620813 DOI: 10.3389/fmicb.2023.1278189] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2023] [Accepted: 10/04/2023] [Indexed: 11/07/2023] Open
Abstract
Medicinal and recreational uses of Cannabis sativa, commonly known as cannabis or hemp, has increased following its legalization in certain regions of the world. Cannabis and hemp plants interact with a community of microbes (i.e., the phytobiome), which can influence various aspects of the host plant. The fungal composition of the C. sativa phytobiome (i.e., mycobiome) currently consists of over 100 species of fungi, which includes phytopathogens, epiphytes, and endophytes, This mycobiome has often been understudied in research aimed at evaluating the safety of cannabis products for humans. Medical research has historically focused instead on substance use and medicinal uses of the plant. Because several components of the mycobiome are reported to produce toxic secondary metabolites (i.e., mycotoxins) that can potentially affect the health of humans and animals and initiate opportunistic infections in immunocompromised patients, there is a need to determine the potential health risks that these contaminants could pose for consumers. This review discusses the mycobiome of cannabis and hemp flowers with a focus on plant-infecting and toxigenic fungi that are most commonly found and are of potential concern (e.g., Aspergillus, Penicillium, Fusarium, and Mucor spp.). We review current regulations for molds and mycotoxins worldwide and review assessment methods including culture-based assays, liquid chromatography, immuno-based technologies, and emerging technologies for these contaminants. We also discuss approaches to reduce fungal contaminants on cannabis and hemp and identify future research needs for contaminant detection, data dissemination, and management approaches. These approaches are designed to yield safer products for all consumers.
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Affiliation(s)
- Kimberly D. Gwinn
- Department of Entomology and Plant Pathology, University of Tennessee, Knoxville, TN, United States
| | - Maxwell C. K. Leung
- School of Mathematical and Natural Sciences, Arizona State University, Glendale, AZ, United States
| | - Ariell B. Stephens
- School of Mathematical and Natural Sciences, Arizona State University, Glendale, AZ, United States
| | - Zamir K. Punja
- Department of Biological Sciences, Simon Fraser University, Burnaby, BC, Canada
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