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For: Chomicz D, Kończak J, Wróbel S, Satława T, Dudzic P, Janusz B, Tarkowski M, Deszyński P, Gawłowski T, Kostyn A, Orłowski M, Klaus T, Schulte L, Martin K, Comeau SR, Krawczyk K. Benchmarking antibody clustering methods using sequence, structural, and machine learning similarity measures for antibody discovery applications. Front Mol Biosci 2024;11:1352508. [PMID: 38606289 PMCID: PMC11008471 DOI: 10.3389/fmolb.2024.1352508] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2023] [Accepted: 02/09/2024] [Indexed: 04/13/2024]  Open
Number Cited by Other Article(s)
1
Almeida DS, Almeida MV, Sampaio JV, Gaieta EM, Costa AHS, Rabelo FFA, Cavalcante CL, Sartori GR, Silva JHM. AbSet: A Standardized Data Set of Antibody Structures for Machine Learning Applications. J Chem Inf Model 2025;65:4767-4774. [PMID: 40349368 PMCID: PMC12117563 DOI: 10.1021/acs.jcim.5c00410] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2025] [Revised: 04/23/2025] [Accepted: 04/30/2025] [Indexed: 05/14/2025]
2
Dudzic P, Janusz B, Satława T, Chomicz D, Gawłowski T, Grabowski R, Jóźwiak P, Tarkowski M, Mycielski M, Wróbel S, Krawczyk K. RIOT-Rapid Immunoglobulin Overview Tool-annotation of nucleotide and amino acid immunoglobulin sequences using an open germline database. Brief Bioinform 2024;26:bbae632. [PMID: 39656773 DOI: 10.1093/bib/bbae632] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2024] [Revised: 10/16/2024] [Accepted: 11/22/2024] [Indexed: 12/17/2024]  Open
3
Dudzic P, Chomicz D, Kończak J, Satława T, Janusz B, Wrobel S, Gawłowski T, Jaszczyszyn I, Bielska W, Demharter S, Spreafico R, Schulte L, Martin K, Comeau SR, Krawczyk K. Large-scale data mining of four billion human antibody variable regions reveals convergence between therapeutic and natural antibodies that constrains search space for biologics drug discovery. MAbs 2024;16:2361928. [PMID: 38844871 PMCID: PMC11164219 DOI: 10.1080/19420862.2024.2361928] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2024] [Accepted: 05/27/2024] [Indexed: 06/12/2024]  Open
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