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Chybowski B, Klimes P, Cimbalnik J, Travnicek V, Nejedly P, Pail M, Peter-Derex L, Hall J, Dubeau F, Jurak P, Brazdil M, Frauscher B. Timing matters for accurate identification of the epileptogenic zone. Clin Neurophysiol 2024; 161:1-9. [PMID: 38430856 DOI: 10.1016/j.clinph.2024.01.007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2023] [Revised: 12/12/2023] [Accepted: 01/01/2024] [Indexed: 03/05/2024]
Abstract
OBJECTIVE Interictal biomarkers of the epileptogenic zone (EZ) and their use in machine learning models open promising avenues for improvement of epilepsy surgery evaluation. Currently, most studies restrict their analysis to short segments of intracranial EEG (iEEG). METHODS We used 2381 hours of iEEG data from 25 patients to systematically select 5-minute segments across various interictal conditions. Then, we tested machine learning models for EZ localization using iEEG features calculated within these individual segments or across them and evaluated the performance by the area under the precision-recall curve (PRAUC). RESULTS On average, models achieved a score of 0.421 (the result of the chance classifier was 0.062). However, the PRAUC varied significantly across the segments (0.323-0.493). Overall, NREM sleep achieved the highest scores, with the best results of 0.493 in N2. When using data from all segments, the model performed significantly better than single segments, except NREM sleep segments. CONCLUSIONS The model based on a short segment of iEEG recording can achieve similar results as a model based on prolonged recordings. The analyzed segment should, however, be carefully and systematically selected, preferably from NREM sleep. SIGNIFICANCE Random selection of short iEEG segments may give rise to inaccurate localization of the EZ.
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Affiliation(s)
- Bartlomiej Chybowski
- University of Edinburgh, School of Medicine, Deanery of Clinical Sciences, 47 Little France Crescent, EH164TJ Edinburgh, Scotland
| | - Petr Klimes
- Institute of Scientific Instruments of the CAS, v. v. i., Královopolská 147, 612 00 Brno, Czech Republic
| | - Jan Cimbalnik
- International Clinical Research Center, St. Anne's University Hospital, Pekařská 53, 602 00 Brno, Czech Republic
| | - Vojtech Travnicek
- Institute of Scientific Instruments of the CAS, v. v. i., Královopolská 147, 612 00 Brno, Czech Republic; International Clinical Research Center, St. Anne's University Hospital, Pekařská 53, 602 00 Brno, Czech Republic
| | - Petr Nejedly
- Institute of Scientific Instruments of the CAS, v. v. i., Královopolská 147, 612 00 Brno, Czech Republic
| | - Martin Pail
- Institute of Scientific Instruments of the CAS, v. v. i., Královopolská 147, 612 00 Brno, Czech Republic; Brno Epilepsy Center, Department of Neurology, St. Anne's University Hospital, Member of ERN-EpiCARE, Faculty of Medicine, Masaryk University, Kamenice 5, 625 00 Brno, Czech Republic; Behavioral and Social Neuroscience Research Group, CEITEC Central European Institute of Technology, Masaryk University, Žerotínovo nám 617/9, 601 77 Brno, Czech Republic
| | - Laure Peter-Derex
- Center for Sleep Medicine and Respiratory Diseases, Lyon University Hospital, Lyon 1 University, 103 Grande Rue de la Croix-Rousse, 69004 Lyon, France; Lyon Neuroscience Research Center, CH Le Vinatier - Bâtiment 462 - Neurocampus, 95 Bd Pinel, 69500 Lyon, France
| | - Jeff Hall
- Montreal Neurological Hospital, McGill University, 3801 Rue University, Montreal, QC H3A 2B4, Quebec, Canada
| | - François Dubeau
- Montreal Neurological Hospital, McGill University, 3801 Rue University, Montreal, QC H3A 2B4, Quebec, Canada
| | - Pavel Jurak
- Institute of Scientific Instruments of the CAS, v. v. i., Královopolská 147, 612 00 Brno, Czech Republic
| | - Milan Brazdil
- Brno Epilepsy Center, Department of Neurology, St. Anne's University Hospital, Member of ERN-EpiCARE, Faculty of Medicine, Masaryk University, Kamenice 5, 625 00 Brno, Czech Republic; Behavioral and Social Neuroscience Research Group, CEITEC Central European Institute of Technology, Masaryk University, Žerotínovo nám 617/9, 601 77 Brno, Czech Republic
| | - Birgit Frauscher
- Montreal Neurological Hospital, McGill University, 3801 Rue University, Montreal, QC H3A 2B4, Quebec, Canada; Department of Neurology, Duke University Medical School and Department of Biomedical Engineering, Pratt School of Engineering, 2424 Erwin Road, Durham, NC, 27705, USA.
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Burelo K, Sharifshazileh M, Indiveri G, Sarnthein J. Automatic Detection of High-Frequency Oscillations With Neuromorphic Spiking Neural Networks. Front Neurosci 2022; 16:861480. [PMID: 35720714 PMCID: PMC9205405 DOI: 10.3389/fnins.2022.861480] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2022] [Accepted: 04/19/2022] [Indexed: 11/13/2022] Open
Abstract
Interictal high-frequency oscillations (HFO) detected in electroencephalography recordings have been proposed as biomarkers of epileptogenesis, seizure propensity, disease severity, and treatment response. Automatic HFO detectors typically analyze the data offline using complex time-consuming algorithms, which limits their clinical application. Neuromorphic circuits offer the possibility of building compact and low-power processing systems that can analyze data on-line and in real time. In this review, we describe a fully automated detection pipeline for HFO that uses, for the first time, spiking neural networks and neuromorphic technology. We demonstrated that our HFO detection pipeline can be applied to recordings from different modalities (intracranial electroencephalography, electrocorticography, and scalp electroencephalography) and validated its operation in a custom-designed neuromorphic processor. Our HFO detection approach resulted in high accuracy and specificity in the prediction of seizure outcome in patients implanted with intracranial electroencephalography and electrocorticography, and in the prediction of epilepsy severity in patients recorded with scalp electroencephalography. Our research provides a further step toward the real-time detection of HFO using compact and low-power neuromorphic devices. The real-time detection of HFO in the operation room may improve the seizure outcome of epilepsy surgery, while the use of our neuromorphic processor for non-invasive therapy monitoring might allow for more effective medication strategies to achieve seizure control. Therefore, this work has the potential to improve the quality of life in patients with epilepsy by improving epilepsy diagnostics and treatment.
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Affiliation(s)
- Karla Burelo
- Klinik für Neurochirurgie, UniversitätsSpital Zürich, Universität Zürich, Zurich, Switzerland
- Institute of Neuroinformatics, University of Zurich and ETH Zurich, Zurich, Switzerland
| | | | - Giacomo Indiveri
- Institute of Neuroinformatics, University of Zurich and ETH Zurich, Zurich, Switzerland
- Zentrum für Neurowissenschaften Zurich, ETH und Universität Zürich, Zurich, Switzerland
| | - Johannes Sarnthein
- Klinik für Neurochirurgie, UniversitätsSpital Zürich, Universität Zürich, Zurich, Switzerland
- Zentrum für Neurowissenschaften Zurich, ETH und Universität Zürich, Zurich, Switzerland
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