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Karimi-Rouzbahani H, Woolgar A. When the Whole Is Less Than the Sum of Its Parts: Maximum Object Category Information and Behavioral Prediction in Multiscale Activation Patterns. Front Neurosci 2022; 16:825746. [PMID: 35310090 PMCID: PMC8924472 DOI: 10.3389/fnins.2022.825746] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2021] [Accepted: 01/24/2022] [Indexed: 11/19/2022] Open
Abstract
Neural codes are reflected in complex neural activation patterns. Conventional electroencephalography (EEG) decoding analyses summarize activations by averaging/down-sampling signals within the analysis window. This diminishes informative fine-grained patterns. While previous studies have proposed distinct statistical features capable of capturing variability-dependent neural codes, it has been suggested that the brain could use a combination of encoding protocols not reflected in any one mathematical feature alone. To check, we combined 30 features using state-of-the-art supervised and unsupervised feature selection procedures (n = 17). Across three datasets, we compared decoding of visual object category between these 17 sets of combined features, and between combined and individual features. Object category could be robustly decoded using the combined features from all of the 17 algorithms. However, the combination of features, which were equalized in dimension to the individual features, were outperformed across most of the time points by the multiscale feature of Wavelet coefficients. Moreover, the Wavelet coefficients also explained the behavioral performance more accurately than the combined features. These results suggest that a single but multiscale encoding protocol may capture the EEG neural codes better than any combination of protocols. Our findings put new constraints on the models of neural information encoding in EEG.
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Affiliation(s)
- Hamid Karimi-Rouzbahani
- Medical Research Council Cognition and Brain Sciences Unit, University of Cambridge, Cambridge, United Kingdom
- Department of Cognitive Science, Perception in Action Research Centre, Macquarie University, Sydney, NSW, Australia
- Department of Computing, Macquarie University, Sydney, NSW, Australia
| | - Alexandra Woolgar
- Medical Research Council Cognition and Brain Sciences Unit, University of Cambridge, Cambridge, United Kingdom
- Department of Cognitive Science, Perception in Action Research Centre, Macquarie University, Sydney, NSW, Australia
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Ng B, Reh RK, Mostafavi S. A practical guide to applying machine learning to infant EEG data. Dev Cogn Neurosci 2022; 54:101096. [PMID: 35334336 PMCID: PMC8943418 DOI: 10.1016/j.dcn.2022.101096] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2021] [Revised: 03/07/2022] [Accepted: 03/10/2022] [Indexed: 11/08/2022] Open
Abstract
Electroencephalography (EEG) has been widely adopted by the developmental cognitive neuroscience community, but the application of machine learning (ML) in this domain lags behind adult EEG studies. Applying ML to infant data is particularly challenging due to the low number of trials, low signal-to-noise ratio, high inter-subject variability, and high inter-trial variability. Here, we provide a step-by-step tutorial on how to apply ML to classify cognitive states in infants. We describe the type of brain attributes that are widely used for EEG classification and also introduce a Riemannian geometry based approach for deriving connectivity estimates that account for inter-trial and inter-subject variability. We present pipelines for learning classifiers using trials from a single infant and from multiple infants, and demonstrate the application of these pipelines on a standard infant EEG dataset of forty 12-month-old infants collected under an auditory oddball paradigm. While we classify perceptual states induced by frequent versus rare stimuli, the presented pipelines can be easily adapted for other experimental designs and stimuli using the associated code that we have made publicly available.
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Baroni F, Morillon B, Trébuchon A, Liégeois-Chauvel C, Olasagasti I, Giraud AL. Converging intracortical signatures of two separated processing timescales in human early auditory cortex. Neuroimage 2020; 218:116882. [PMID: 32439539 DOI: 10.1016/j.neuroimage.2020.116882] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2019] [Revised: 03/30/2020] [Accepted: 04/23/2020] [Indexed: 11/15/2022] Open
Abstract
Neural oscillations in auditory cortex are argued to support parsing and representing speech constituents at their corresponding temporal scales. Yet, how incoming sensory information interacts with ongoing spontaneous brain activity, what features of the neuronal microcircuitry underlie spontaneous and stimulus-evoked spectral fingerprints, and what these fingerprints entail for stimulus encoding, remain largely open questions. We used a combination of human invasive electrophysiology, computational modeling and decoding techniques to assess the information encoding properties of brain activity and to relate them to a plausible underlying neuronal microarchitecture. We analyzed intracortical auditory EEG activity from 10 patients while they were listening to short sentences. Pre-stimulus neural activity in early auditory cortical regions often exhibited power spectra with a shoulder in the delta range and a small bump in the beta range. Speech decreased power in the beta range, and increased power in the delta-theta and gamma ranges. Using multivariate machine learning techniques, we assessed the spectral profile of information content for two aspects of speech processing: detection and discrimination. We obtained better phase than power information decoding, and a bimodal spectral profile of information content with better decoding at low (delta-theta) and high (gamma) frequencies than at intermediate (beta) frequencies. These experimental data were reproduced by a simple rate model made of two subnetworks with different timescales, each composed of coupled excitatory and inhibitory units, and connected via a negative feedback loop. Modeling and experimental results were similar in terms of pre-stimulus spectral profile (except for the iEEG beta bump), spectral modulations with speech, and spectral profile of information content. Altogether, we provide converging evidence from both univariate spectral analysis and decoding approaches for a dual timescale processing infrastructure in human auditory cortex, and show that it is consistent with the dynamics of a simple rate model.
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Affiliation(s)
- Fabiano Baroni
- Department of Fundamental Neuroscience, University of Geneva, Geneva, Switzerland; School of Engineering, École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland.
| | - Benjamin Morillon
- Aix Marseille Université, Institut National de la Santé et de la Recherche Médicale (INSERM), Institut de Neurosciences des Systémes (INS), Marseille, France
| | - Agnès Trébuchon
- Aix Marseille Université, Institut National de la Santé et de la Recherche Médicale (INSERM), Institut de Neurosciences des Systémes (INS), Marseille, France; Clinical Neurophysiology and Epileptology Department, Timone Hospital, Assistance Publique Hôpitaux de Marseille, Marseille, France
| | - Catherine Liégeois-Chauvel
- Aix Marseille Université, Institut National de la Santé et de la Recherche Médicale (INSERM), Institut de Neurosciences des Systémes (INS), Marseille, France; Department of Neurological Surgery, University of Pittsburgh, PA, 15213, USA
| | - Itsaso Olasagasti
- Department of Fundamental Neuroscience, University of Geneva, Geneva, Switzerland
| | - Anne-Lise Giraud
- Department of Fundamental Neuroscience, University of Geneva, Geneva, Switzerland
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Dash D, Ferrari P, Wang J. Decoding Imagined and Spoken Phrases From Non-invasive Neural (MEG) Signals. Front Neurosci 2020; 14:290. [PMID: 32317917 PMCID: PMC7154084 DOI: 10.3389/fnins.2020.00290] [Citation(s) in RCA: 36] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2019] [Accepted: 03/13/2020] [Indexed: 11/16/2022] Open
Abstract
Speech production is a hierarchical mechanism involving the synchronization of the brain and the oral articulators, where the intention of linguistic concepts is transformed into meaningful sounds. Individuals with locked-in syndrome (fully paralyzed but aware) lose their motor ability completely including articulation and even eyeball movement. The neural pathway may be the only option to resume a certain level of communication for these patients. Current brain-computer interfaces (BCIs) use patients' visual and attentional correlates to build communication, resulting in a slow communication rate (a few words per minute). Direct decoding of imagined speech from the neural signals (and then driving a speech synthesizer) has the potential for a higher communication rate. In this study, we investigated the decoding of five imagined and spoken phrases from single-trial, non-invasive magnetoencephalography (MEG) signals collected from eight adult subjects. Two machine learning algorithms were used. One was an artificial neural network (ANN) with statistical features as the baseline approach. The other was convolutional neural networks (CNNs) applied on the spatial, spectral and temporal features extracted from the MEG signals. Experimental results indicated the possibility to decode imagined and spoken phrases directly from neuromagnetic signals. CNNs were found to be highly effective with an average decoding accuracy of up to 93% for the imagined and 96% for the spoken phrases.
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Affiliation(s)
- Debadatta Dash
- Department of Electrical and Computer Engineering, University of Texas at Austin, Austin, TX, United States
- Department of Neurology, Dell Medical School, University of Texas at Austin, Austin, TX, United States
| | - Paul Ferrari
- MEG Lab, Dell Children's Medical Center, Austin, TX, United States
- Department of Psychology, University of Texas at Austin, Austin, TX, United States
| | - Jun Wang
- Department of Neurology, Dell Medical School, University of Texas at Austin, Austin, TX, United States
- Department of Communication Sciences and Disorders, University of Texas at Austin, Austin, TX, United States
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Zeng H, Sun Y, Xu G, Wu C, Song A, Xu B, Li H, Hu C. The Advantage of Low-Delta Electroencephalogram Phase Feature for Reconstructing the Center-Out Reaching Hand Movements. Front Neurosci 2019; 13:480. [PMID: 31156367 PMCID: PMC6530632 DOI: 10.3389/fnins.2019.00480] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2018] [Accepted: 04/29/2019] [Indexed: 11/13/2022] Open
Abstract
It is an emerging frontier of research on the use of neural signals for prosthesis control, in order to restore lost function to amputees and patients after spinal cord injury. Compared to the invasive neural signal based brain-machine interface (BMI), a non-invasive alternative, i.e., the electroencephalogram (EEG)-based BMI would be more widely accepted by the patients above. Ideally, a real-time continuous neuroprosthestic control is required for practical applications. However, conventional EEG-based BMIs mainly deal with the discrete brain activity classification. Until recently, the literature has reported several attempts for achieving the real-time continuous control by reconstructing the continuous movement parameters (e.g., speed, position, etc.) from the EEG recordings, and the low-frequency band EEG is consistently reported to encode the continuous motor control information. Previous studies with executed movement tasks have extensively relied on the amplitude representation of such slow oscillations of EEG signals for building models to decode kinematic parameters. Inspired by the recent successes of instantaneous phase of low-frequency invasive brain signals in the motor control and sensory processing domains, this study examines the extension of such a slow-oscillation phase representation to the reconstructing two-dimensional hand movements, with the non-invasive EEG signals for the first time. The data for analysis are collected on five healthy subjects performing 2D hand center-out reaching along four directions in two sessions. On representative channels over the cortices encoding the execution information of reaching movements, we show that the low-delta EEG phase representation is characterized by higher signal-to-noise ratio and stronger modulation by the movement tasks, compared to the low-delta EEG amplitude representation. Furthermore, we have tested the low-delta EEG phase representation with two commonly used linear decoding models. The results demonstrate that the low-delta EEG phase based decoders lead to superior performance for 2D executed movement reconstruction to its amplitude based counterparts, as well as the other-frequency band amplitude and power based features. Thus, our study contributes to improve the movement reconstruction from EEG by introducing a new feature set based on the low-delta EEG phase patterns, and demonstrates its potential for continuous fine motion control of neuroprostheses.
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Affiliation(s)
- Hong Zeng
- Jiangsu Key Lab of Remote Measurement and Control, School of Instrument Science and Engineering, Southeast University, Nanjing, China.,Mechatronics and Haptics Interfaces Laboratory, Department of Mechanical Engineering, Rice University, Houston, TX, United States
| | - Yuanzi Sun
- Jiangsu Key Lab of Remote Measurement and Control, School of Instrument Science and Engineering, Southeast University, Nanjing, China
| | - Guozheng Xu
- College of Automation, Nanjing University of Posts and Telecommunications, Nanjing, China
| | - Changcheng Wu
- College of Automation Engineering, Nanjing University of Aeronautics and Astronautics, Nanjing, China
| | - Aiguo Song
- Jiangsu Key Lab of Remote Measurement and Control, School of Instrument Science and Engineering, Southeast University, Nanjing, China
| | - Baoguo Xu
- Jiangsu Key Lab of Remote Measurement and Control, School of Instrument Science and Engineering, Southeast University, Nanjing, China
| | - Huijun Li
- Jiangsu Key Lab of Remote Measurement and Control, School of Instrument Science and Engineering, Southeast University, Nanjing, China
| | - Cong Hu
- Guangxi Key Laboratory of Automatic Detecting Technology and Instruments, Guilin University of Electronic Technology, Guilin, China
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Cooney C, Folli R, Coyle D. Neurolinguistics Research Advancing Development of a Direct-Speech Brain-Computer Interface. iScience 2018; 8:103-125. [PMID: 30296666 PMCID: PMC6174918 DOI: 10.1016/j.isci.2018.09.016] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2018] [Revised: 09/04/2018] [Accepted: 09/18/2018] [Indexed: 01/09/2023] Open
Abstract
A direct-speech brain-computer interface (DS-BCI) acquires neural signals corresponding to imagined speech, then processes and decodes these signals to produce a linguistic output in the form of phonemes, words, or sentences. Recent research has shown the potential of neurolinguistics to enhance decoding approaches to imagined speech with the inclusion of semantics and phonology in experimental procedures. As neurolinguistics research findings are beginning to be incorporated within the scope of DS-BCI research, it is our view that a thorough understanding of imagined speech, and its relationship with overt speech, must be considered an integral feature of research in this field. With a focus on imagined speech, we provide a review of the most important neurolinguistics research informing the field of DS-BCI and suggest how this research may be utilized to improve current experimental protocols and decoding techniques. Our review of the literature supports a cross-disciplinary approach to DS-BCI research, in which neurolinguistics concepts and methods are utilized to aid development of a naturalistic mode of communication.
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Affiliation(s)
- Ciaran Cooney
- Intelligent Systems Research Centre, Ulster University, Derry, UK.
| | - Raffaella Folli
- Institute for Research in Social Sciences, Ulster University, Jordanstown, UK
| | - Damien Coyle
- Intelligent Systems Research Centre, Ulster University, Derry, UK
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