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For: Xu Z, Shi X, Bao M, Song X, Zhang Y, Wang H, Xie H, Mao F, Wang S, Jin H, Dong S, Zhang F, Wu Z, Wu Y. Transcriptome-Wide Analysis of RNA m6A Methylation and Gene Expression Changes Among Two Arabidopsis Ecotypes and Their Reciprocal Hybrids. Front Plant Sci 2021;12:685189. [PMID: 34178005 PMCID: PMC8222996 DOI: 10.3389/fpls.2021.685189] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/24/2021] [Accepted: 05/14/2021] [Indexed: 05/10/2023]
Number Cited by Other Article(s)
1
Xie S, Hagen D, Becker GM, Davenport KM, Shira KA, Stegemiller MR, Thorne JW, Khilji S, Konetchy D, Villamediana P, Murdoch BM, McKay SD. Analyzing the relationship of RNA and DNA methylation with gene expression. Genome Biol 2025;26:140. [PMID: 40405312 PMCID: PMC12101012 DOI: 10.1186/s13059-025-03617-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2024] [Accepted: 05/14/2025] [Indexed: 05/24/2025]  Open
2
Song M, Zhao J, Zhang C, Jia C, Yang J, Zhao H, Zhai J, Lei B, Tao S, Chen S, Su R, Ma C. PEA-m6A: an ensemble learning framework for accurately predicting N6-methyladenosine modifications in plants. PLANT PHYSIOLOGY 2024;195:1200-1213. [PMID: 38428981 DOI: 10.1093/plphys/kiae120] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/11/2024] [Revised: 01/11/2024] [Accepted: 02/01/2024] [Indexed: 03/03/2024]
3
Song P, Cai Z, Jia G. Principles, functions, and biological implications of m6A in plants. RNA (NEW YORK, N.Y.) 2024;30:491-499. [PMID: 38531642 PMCID: PMC11019739 DOI: 10.1261/rna.079951.124] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/14/2024] [Accepted: 02/09/2024] [Indexed: 03/28/2024]
4
Xie Y, Chan LY, Cheung MY, Li MW, Lam HM. Current technical advancements in plant epitranscriptomic studies. THE PLANT GENOME 2023;16:e20316. [PMID: 36890704 DOI: 10.1002/tpg2.20316] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/14/2022] [Accepted: 02/05/2023] [Indexed: 06/18/2023]
5
Zhang Y, Huang D, Miao Y. Epigenetic control of plant senescence and cell death and its application in crop improvement. FRONTIERS IN PLANT SCIENCE 2023;14:1258487. [PMID: 37965008 PMCID: PMC10642554 DOI: 10.3389/fpls.2023.1258487] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/24/2023] [Accepted: 10/16/2023] [Indexed: 11/16/2023]
6
Bresnahan ST, Lee E, Clark L, Ma R, Markey M, Rangel J, Grozinger CM, Li-Byarlay H. Examining parent-of-origin effects on transcription and RNA methylation in mediating aggressive behavior in honey bees (Apis mellifera). BMC Genomics 2023;24:315. [PMID: 37308882 PMCID: PMC10258952 DOI: 10.1186/s12864-023-09411-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2023] [Accepted: 05/27/2023] [Indexed: 06/14/2023]  Open
7
Wang S, Wang H, Xu Z, Jiang S, Shi Y, Xie H, Wang S, Hua J, Wu Y. m6A mRNA modification promotes chilling tolerance and modulates gene translation efficiency in Arabidopsis. PLANT PHYSIOLOGY 2023;192:1466-1482. [PMID: 36810961 PMCID: PMC10231368 DOI: 10.1093/plphys/kiad112] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/27/2022] [Revised: 12/14/2022] [Accepted: 01/20/2023] [Indexed: 05/16/2023]
8
Tang J, Chen S, Jia G. Detection, regulation, and functions of RNA N6-methyladenosine modification in plants. PLANT COMMUNICATIONS 2023;4:100546. [PMID: 36627844 DOI: 10.1016/j.xplc.2023.100546] [Citation(s) in RCA: 35] [Impact Index Per Article: 17.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/01/2022] [Revised: 12/22/2022] [Accepted: 01/05/2023] [Indexed: 05/11/2023]
9
Garcias-Morales D, Palomar VM, Charlot F, Nogué F, Covarrubias AA, Reyes JL. N6 -Methyladenosine modification of mRNA contributes to the transition from 2D to 3D growth in the moss Physcomitrium patens. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2023;114:7-22. [PMID: 36794900 DOI: 10.1111/tpj.16149] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/12/2022] [Revised: 02/07/2023] [Accepted: 02/10/2023] [Indexed: 06/18/2023]
10
Zhu XT, Zhou R, Che J, Zheng YY, Tahir Ul Qamar M, Feng JW, Zhang J, Gao J, Chen LL. Ribosome profiling reveals the translational landscape and allele-specific translational efficiency in rice. PLANT COMMUNICATIONS 2023;4:100457. [PMID: 36199246 PMCID: PMC10030323 DOI: 10.1016/j.xplc.2022.100457] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/21/2022] [Revised: 08/23/2022] [Accepted: 10/01/2022] [Indexed: 05/04/2023]
11
Shen L, Ma J, Li P, Wu Y, Yu H. Recent advances in the plant epitranscriptome. Genome Biol 2023;24:43. [PMID: 36882788 PMCID: PMC9990323 DOI: 10.1186/s13059-023-02872-6] [Citation(s) in RCA: 30] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2022] [Accepted: 02/12/2023] [Indexed: 03/09/2023]  Open
12
Chen X, Xu P, Zhang H, Su X, Guo L, Zhou X, Wang J, Huang P, Zhang Q, Sun R. EGFR and ERK activation resists flavonoid quercetin-induced anticancer activities in human cervical cancer cells in vitro. Oncol Lett 2021;22:754. [PMID: 34539858 PMCID: PMC8436358 DOI: 10.3892/ol.2021.13015] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2021] [Accepted: 06/28/2021] [Indexed: 02/06/2023]  Open
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